Wall clock time and date at job start Fri Apr 10 2020 23:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38169 * 119.54987 * 2 1 4 4 C 1.39803 * 118.99918 * 179.97438 * 3 2 1 5 5 C 1.48155 * 120.92142 * 180.02562 * 4 3 2 6 6 O 1.21516 * 119.99926 * 352.43436 * 5 4 3 7 7 N 1.34772 * 119.99857 * 172.44284 * 5 4 3 8 8 C 1.47171 * 125.59608 * 5.01050 * 7 5 4 9 9 C 1.54663 * 107.35228 * 180.88355 * 8 7 5 10 10 C 1.53296 * 102.71577 * 20.50350 * 9 8 7 11 11 C 1.53309 * 112.22362 * 88.17698 * 10 9 8 12 12 C 1.54659 * 102.72148 * 155.00166 * 11 10 9 13 13 N 1.47168 * 107.34787 * 339.49048 * 12 11 10 14 14 C 1.36940 * 125.59250 * 179.11803 * 13 12 11 15 15 H 1.07997 * 120.00029 * 179.97438 * 14 13 12 16 16 C 1.38807 * 119.99806 * 359.97438 * 14 13 12 17 17 N 1.31619 * 120.00134 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99978 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46777 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47208 * 120.00083 * 18 16 14 21 21 H 1.48504 * 109.46875 * 240.00139 * 18 16 14 22 22 C 1.47786 * 108.81432 * 359.10166 * 13 12 11 23 23 C 1.47783 * 125.59475 * 184.69845 * 7 5 4 24 24 C 1.39832 * 118.15428 * 359.97438 * 4 3 2 25 25 C 1.38131 * 119.00448 * 0.28297 * 24 4 3 26 26 N 1.31799 * 119.55484 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47142 * 90.00450 * 1 2 3 28 28 H 1.09006 * 109.47233 * 210.00178 * 1 2 3 29 29 H 1.09001 * 109.47412 * 329.99912 * 1 2 3 30 30 H 1.08005 * 120.50243 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.86386 * 300.32389 * 8 7 5 32 32 H 1.09004 * 109.87250 * 61.43659 * 8 7 5 33 33 H 1.09002 * 110.76038 * 138.81392 * 9 8 7 34 34 H 1.09001 * 110.75857 * 262.01198 * 9 8 7 35 35 H 1.08999 * 110.76252 * 273.31310 * 11 10 9 36 36 H 1.09008 * 110.75898 * 36.50681 * 11 10 9 37 37 H 1.09000 * 109.87210 * 98.93609 * 12 11 10 38 38 H 1.08999 * 109.86919 * 219.91451 * 12 11 10 39 39 H 0.97006 * 120.00048 * 179.97438 * 17 16 14 40 40 H 1.08993 * 110.40162 * 263.37112 * 22 13 12 41 41 H 1.09005 * 110.40374 * 140.95592 * 22 13 12 42 42 H 1.09003 * 110.40438 * 276.64405 * 23 7 5 43 43 H 1.09004 * 110.40145 * 39.05022 * 23 7 5 44 44 H 1.08006 * 120.49900 * 180.02562 * 24 4 3 45 45 H 1.08001 * 119.55073 * 179.70173 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5863 1.1885 0.0005 5 6 4.3598 2.4521 0.0011 6 8 3.7873 3.5150 -0.1374 7 7 5.6984 2.4227 0.1552 8 6 6.5259 1.2078 0.2276 9 6 7.9915 1.6593 0.4283 10 6 7.8342 3.0824 0.9761 11 6 7.7062 3.1049 2.5037 12 6 8.2063 4.5227 2.8665 13 7 9.0160 5.0050 1.7361 14 6 9.6263 6.2284 1.6576 15 1 10.2017 6.4896 0.7818 16 6 9.5053 7.1328 2.7037 17 7 8.8044 6.8143 3.7712 18 14 10.3384 8.8013 2.5969 19 1 11.0610 8.9119 1.3044 20 1 9.3139 9.8726 2.6851 21 1 11.3030 8.9455 3.7168 22 6 9.0627 3.9524 0.6999 23 6 6.5769 3.6053 0.2726 24 6 4.2343 -0.0506 0.0016 25 6 3.4741 -1.2039 -0.0039 26 7 2.1571 -1.1465 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6492 2.1378 -0.0004 31 1 6.2087 0.5934 1.0702 32 1 6.4361 0.6425 -0.7001 33 1 8.4969 1.0201 1.1524 34 1 8.5276 1.6645 -0.5207 35 1 6.6675 2.9723 2.8064 36 1 8.3393 2.3413 2.9557 37 1 7.3562 5.1866 3.0232 38 1 8.8150 4.4810 3.7697 39 1 8.7201 7.4461 4.5024 40 1 9.9748 3.3637 0.7972 41 1 8.9992 4.3948 -0.2943 42 1 6.8250 3.9939 -0.7151 43 1 6.0976 4.3764 0.8757 44 1 5.3129 -0.1052 0.0025 45 1 3.9653 -2.1657 -0.0080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041747844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:18 Heat of formation + Delta-G solvation = 52.396086 kcal Electronic energy + Delta-G solvation = -26392.716412 eV Core-core repulsion = 22797.672987 eV Total energy + Delta-G solvation = -3595.043426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07700 -39.87260 -38.29723 -35.92390 -33.64768 -32.68710 -32.40528 -30.69582 -29.30868 -28.65392 -27.76802 -26.23509 -24.66760 -23.59525 -23.15542 -22.15300 -20.32719 -19.85807 -18.94489 -17.51153 -16.92588 -16.32871 -16.20181 -15.94850 -15.59104 -14.85024 -14.76971 -14.64991 -14.36573 -13.93099 -13.86838 -13.57778 -13.19387 -12.96351 -12.73937 -12.61297 -12.52223 -12.16435 -12.05064 -11.95528 -11.61019 -11.24866 -11.20707 -10.89267 -10.79803 -10.37346 -10.24292 -10.08223 -10.03797 -9.96857 -9.80481 -9.65447 -9.58927 -9.23697 -8.66226 -8.60862 -6.84925 -5.71837 -3.05685 0.52875 0.81579 2.76023 2.83796 3.39952 3.45345 3.47912 3.59610 3.98995 4.14664 4.42328 4.48033 4.49564 4.71235 4.75406 4.82811 4.85160 5.15110 5.15740 5.17004 5.25425 5.30724 5.37361 5.45075 5.50194 5.63639 5.74868 5.75280 5.79208 5.83201 5.85750 5.91222 6.04665 6.12196 6.21296 6.28771 6.37077 6.46951 6.52787 6.66805 6.73437 7.42860 7.54989 7.59895 7.66072 7.81969 8.03591 8.23987 9.20745 9.80920 10.46079 11.39769 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026087 B = 0.002933 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.093975 B = 9543.070624 C =10069.367914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.121 3.879 3 C -0.117 4.117 4 C -0.075 4.075 5 C 0.568 3.432 6 O -0.529 6.529 7 N -0.606 5.606 8 C 0.090 3.910 9 C -0.119 4.119 10 C -0.084 4.084 11 C -0.129 4.129 12 C 0.178 3.822 13 N -0.605 5.605 14 C -0.228 4.228 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 0.911 3.089 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.152 3.848 23 C 0.131 3.869 24 C -0.183 4.183 25 C 0.099 3.901 26 N -0.475 5.475 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.251 0.749 40 H 0.026 0.974 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.170 0.830 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 -18.121 -7.681 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.137 4.137 4 C -0.086 4.086 5 C 0.356 3.644 6 O -0.406 6.406 7 N -0.339 5.339 8 C -0.032 4.032 9 C -0.158 4.158 10 C -0.085 4.085 11 C -0.168 4.168 12 C 0.054 3.946 13 N -0.332 5.332 14 C -0.356 4.356 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.025 3.975 23 C 0.010 3.990 24 C -0.203 4.203 25 C -0.058 4.058 26 N -0.185 5.185 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.164 0.836 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.187 0.813 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.545 -18.085 -7.625 22.281 hybrid contribution 0.995 1.618 0.067 1.901 sum -9.550 -16.467 -7.558 20.482 Atomic orbital electron populations 1.20730 0.88323 1.03734 1.03295 1.21291 0.97290 0.87787 0.95276 1.22133 0.93300 1.00131 0.98175 1.20359 0.94338 0.93658 1.00215 1.17834 0.80669 0.88375 0.77552 1.90804 1.68990 1.31300 1.49463 1.48549 1.05278 1.09129 1.70966 1.22631 0.91795 0.87820 1.00952 1.22498 0.94193 0.96775 1.02300 1.21644 0.95869 0.94196 0.96815 1.22666 1.00402 1.00896 0.92802 1.21223 0.94816 0.88055 0.90547 1.44593 1.59666 1.13248 1.15690 1.19084 1.24859 0.89583 1.02111 0.90373 1.24802 1.00400 0.98652 0.96574 1.69973 1.44298 1.35109 1.07464 0.86054 0.78594 0.83923 0.77244 1.20511 1.21758 1.21794 1.21212 0.92953 0.89862 0.93444 1.22083 0.88940 0.87353 1.00610 1.23659 1.04259 0.92527 0.99820 1.22764 0.89143 0.98462 0.95464 1.67368 1.10498 1.29501 1.11151 0.90223 0.90286 0.90410 0.83568 0.90419 0.90641 0.89553 0.90218 0.92308 0.92027 0.93626 0.93864 0.93809 0.95661 0.94081 0.91093 0.89453 0.81348 0.82144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.00 0.37 -0.41 16 2 C 0.12 1.29 6.78 -82.63 -0.56 0.73 16 3 C -0.12 -1.39 9.31 -39.02 -0.36 -1.75 16 4 C -0.07 -0.94 5.91 -104.64 -0.62 -1.56 16 5 C 0.57 8.80 7.83 -12.19 -0.10 8.70 16 6 O -0.53 -10.16 16.79 5.35 0.09 -10.07 16 7 N -0.61 -8.55 3.34 -172.15 -0.58 -9.13 16 8 C 0.09 0.91 4.88 -2.80 -0.01 0.89 16 9 C -0.12 -1.30 5.97 -25.70 -0.15 -1.46 16 10 C -0.08 -1.31 0.62 -154.03 -0.10 -1.41 16 11 C -0.13 -2.28 5.92 -25.70 -0.15 -2.43 16 12 C 0.18 4.23 5.38 -2.80 -0.02 4.21 16 13 N -0.61 -14.93 3.41 -170.60 -0.58 -15.52 16 14 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -27.02 10.30 55.49 0.57 -26.45 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C 0.15 2.90 6.28 -3.31 -0.02 2.88 16 23 C 0.13 2.17 5.85 -3.20 -0.02 2.15 16 24 C -0.18 -1.78 8.67 -39.02 -0.34 -2.12 16 25 C 0.10 0.91 11.17 -17.59 -0.20 0.72 16 26 N -0.47 -5.24 10.25 -9.52 -0.10 -5.34 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.15 1.69 7.76 -52.48 -0.41 1.29 16 31 H 0.08 0.68 6.69 -51.93 -0.35 0.33 16 32 H 0.08 0.58 6.81 -51.93 -0.35 0.23 16 33 H 0.09 0.83 7.78 -51.93 -0.40 0.43 16 34 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.06 1.01 8.01 -51.93 -0.42 0.60 16 36 H 0.06 0.98 7.82 -51.92 -0.41 0.58 16 37 H 0.05 1.23 7.39 -51.93 -0.38 0.84 16 38 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.03 0.47 8.07 -51.93 -0.42 0.05 16 41 H 0.04 0.77 7.80 -51.93 -0.41 0.37 16 42 H 0.07 1.17 7.85 -51.93 -0.41 0.76 16 43 H 0.09 1.74 8.00 -51.93 -0.42 1.33 16 44 H 0.17 1.27 2.96 -52.81 -0.16 1.11 16 45 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -33.53 356.53 -9.33 -42.86 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.56 Total: -1.25 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -2.53 Total: 2.42 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.68 Total: -56.43 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.53 -9.33 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041747844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.261 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds