Wall clock time and date at job start Fri Apr 10 2020 23:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38598 * 119.54969 * 2 1 4 4 C 1.38586 * 119.35282 * 180.02562 * 3 2 1 5 5 C 1.38626 * 118.48547 * 0.26890 * 4 3 2 6 6 C 1.39269 * 119.06269 * 359.44474 * 5 4 3 7 7 C 1.48165 * 119.72688 * 180.27447 * 6 5 4 8 8 O 1.21516 * 119.99864 * 336.78415 * 7 6 5 9 9 N 1.34771 * 120.00339 * 156.78166 * 7 6 5 10 10 C 1.47157 * 121.21949 * 2.37180 * 9 7 6 11 11 C 1.52830 * 107.97845 * 237.28881 * 10 9 7 12 12 C 1.53096 * 110.58225 * 302.65402 * 11 10 9 13 13 H 1.08997 * 112.49407 * 289.43903 * 12 11 10 14 14 C 1.56029 * 106.38716 * 164.56373 * 12 11 10 15 15 C 1.54504 * 102.61293 * 281.62012 * 14 12 11 16 16 N 1.47432 * 107.15048 * 337.15785 * 15 14 12 17 17 C 1.36938 * 126.06072 * 178.37319 * 16 15 14 18 18 H 1.08003 * 119.99535 * 186.64650 * 17 16 15 19 19 C 1.38811 * 119.99958 * 6.64844 * 17 16 15 20 20 N 1.31618 * 119.99890 * 352.22675 * 19 17 16 21 21 Si 1.86798 * 119.99692 * 172.22422 * 19 17 16 22 22 H 1.48496 * 109.47116 * 94.95892 * 21 19 17 23 23 H 1.48502 * 109.46698 * 214.95933 * 21 19 17 24 24 H 1.48502 * 109.47304 * 334.95198 * 21 19 17 25 25 C 1.46476 * 107.87596 * 358.37606 * 16 15 14 26 26 H 1.09000 * 108.41933 * 270.10359 * 25 16 15 27 27 C 1.46762 * 121.21952 * 182.08801 * 9 7 6 28 28 N 1.31491 * 119.54863 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47477 * 90.00271 * 1 2 3 30 30 H 1.08997 * 109.47485 * 210.00007 * 1 2 3 31 31 H 1.08999 * 109.47378 * 330.00125 * 1 2 3 32 32 H 1.08004 * 120.32499 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.75707 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.46798 * 179.70141 * 5 4 3 35 35 H 1.08999 * 109.75374 * 356.91496 * 10 9 7 36 36 H 1.09001 * 109.75580 * 117.61712 * 10 9 7 37 37 H 1.09004 * 109.25547 * 62.94482 * 11 10 9 38 38 H 1.09005 * 109.25201 * 182.40984 * 11 10 9 39 39 H 1.08994 * 110.78697 * 39.90654 * 14 12 11 40 40 H 1.09001 * 110.77696 * 163.34439 * 14 12 11 41 41 H 1.08996 * 109.90098 * 217.77503 * 15 14 12 42 42 H 1.09003 * 110.04664 * 96.62121 * 15 14 12 43 43 H 0.97000 * 119.99424 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.23153 * 247.78983 * 27 9 7 45 45 H 1.09007 * 109.22667 * 7.15228 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5763 1.2009 -0.0005 5 6 4.2333 -0.0197 -0.0068 6 6 3.4820 -1.1924 -0.0005 7 6 4.1691 -2.5051 -0.0008 8 8 5.3057 -2.5959 -0.4210 9 7 3.5335 -3.5985 0.4649 10 6 2.1397 -3.5296 0.9319 11 6 2.1022 -4.0211 2.3786 12 6 2.6671 -5.4404 2.4797 13 1 2.0076 -6.1845 2.0331 14 6 2.9561 -5.6924 3.9921 15 6 4.2853 -4.9361 4.2122 16 7 4.9416 -4.8187 2.8972 17 6 6.1299 -4.1875 2.6429 18 1 6.4699 -4.0664 1.6249 19 6 6.8974 -3.7035 3.6933 20 7 6.4165 -3.7126 4.9185 21 14 8.6128 -3.0394 3.3681 22 1 8.5493 -1.5652 3.2007 23 1 9.4971 -3.3699 4.5144 24 1 9.1557 -3.6552 2.1306 25 6 4.0971 -5.4969 1.9111 26 1 4.4042 -6.5412 1.8546 27 6 4.2041 -4.9029 0.5190 28 7 2.1554 -1.1439 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6484 2.1399 -0.0004 33 1 4.1318 2.1271 -0.0001 34 1 5.3126 -0.0608 -0.0122 35 1 1.7853 -2.5000 0.8830 36 1 1.5106 -4.1658 0.3093 37 1 2.6967 -3.3523 3.0010 38 1 1.0711 -4.0191 2.7321 39 1 2.1646 -5.2721 4.6124 40 1 3.0797 -6.7572 4.1899 41 1 4.9224 -5.4968 4.8961 42 1 4.0879 -3.9440 4.6183 43 1 6.9528 -3.3740 5.6524 44 1 3.7371 -5.5768 -0.1992 45 1 5.2556 -4.7769 0.2608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041935728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:22 Heat of formation + Delta-G solvation = 48.154958 kcal Electronic energy + Delta-G solvation = -27894.286761 eV Core-core repulsion = 24299.059426 eV Total energy + Delta-G solvation = -3595.227335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75222 -39.34874 -37.82006 -34.97253 -33.07384 -32.79310 -32.55836 -30.97528 -29.08053 -28.27611 -27.79020 -25.16915 -24.42419 -23.20905 -22.54073 -22.03430 -20.06805 -19.88890 -18.37325 -17.19654 -16.58479 -16.45627 -15.94952 -15.36753 -15.11949 -14.75726 -14.47640 -14.13487 -13.99318 -13.82171 -13.46320 -13.35544 -12.91910 -12.76074 -12.55724 -12.38846 -12.33422 -11.96045 -11.87366 -11.43371 -11.32161 -11.22025 -10.80912 -10.75837 -10.64423 -10.09739 -9.98078 -9.88628 -9.77864 -9.73721 -9.59104 -9.46400 -8.97596 -8.71747 -8.45699 -8.00175 -6.70294 -5.61341 -2.91457 0.76413 1.15686 3.04944 3.38347 3.48952 3.54250 3.59318 3.88729 4.14618 4.57747 4.61553 4.76933 4.92088 5.05672 5.18099 5.28730 5.35974 5.41747 5.44395 5.48219 5.52805 5.64179 5.69193 5.84940 5.86333 5.92265 5.97870 6.04661 6.08786 6.13157 6.21954 6.31982 6.37097 6.42668 6.51461 6.61275 6.68936 6.75917 6.82443 7.06540 7.22544 7.65881 7.71209 7.72445 7.96145 7.98014 8.35398 8.65004 9.33754 9.94969 10.60883 11.51656 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.005921 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.258301 B = 4727.410744 C = 5923.827721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.116 3.884 3 C -0.158 4.158 4 C -0.076 4.076 5 C -0.118 4.118 6 C 0.103 3.897 7 C 0.574 3.426 8 O -0.533 6.533 9 N -0.570 5.570 10 C 0.075 3.925 11 C -0.122 4.122 12 C -0.102 4.102 13 H 0.074 0.926 14 C -0.143 4.143 15 C 0.178 3.822 16 N -0.588 5.588 17 C -0.214 4.214 18 H 0.083 0.917 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.904 3.096 22 H -0.292 1.292 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.155 3.845 26 H 0.027 0.973 27 C 0.110 3.890 28 N -0.451 5.451 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.040 0.960 43 H 0.249 0.751 44 H 0.057 0.943 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 6.551 -8.737 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.023 4.023 3 C -0.178 4.178 4 C -0.102 4.102 5 C -0.139 4.139 6 C -0.035 4.035 7 C 0.360 3.640 8 O -0.409 6.409 9 N -0.301 5.301 10 C -0.048 4.048 11 C -0.160 4.160 12 C -0.122 4.122 13 H 0.093 0.907 14 C -0.181 4.181 15 C 0.054 3.946 16 N -0.313 5.313 17 C -0.342 4.342 18 H 0.100 0.900 19 C -0.204 4.204 20 N -0.572 5.572 21 Si 0.735 3.265 22 H -0.220 1.220 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.047 3.953 26 H 0.044 0.956 27 C -0.014 4.014 28 N -0.164 5.164 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.155 0.845 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.223 5.797 -8.831 17.717 hybrid contribution 1.427 1.121 0.165 1.822 sum -12.796 6.918 -8.666 16.932 Atomic orbital electron populations 1.20720 0.88432 1.03699 1.03129 1.21437 0.97188 0.88355 0.95340 1.22081 0.94964 0.99206 1.01570 1.21601 0.94419 0.98252 0.95889 1.22120 1.02461 0.91724 0.97549 1.21306 0.89332 0.94716 0.98139 1.17663 0.85062 0.82666 0.78624 1.90767 1.17335 1.84818 1.48017 1.47627 1.13741 1.08178 1.60508 1.22814 0.81521 1.06385 0.94088 1.21851 0.99990 0.97179 0.97019 1.22392 0.96608 0.96333 0.96865 0.90733 1.23145 0.99925 1.00005 0.95061 1.21219 0.88174 0.97528 0.87717 1.44289 1.21176 1.63495 1.02359 1.19088 0.93287 1.28904 0.92954 0.89969 1.24732 0.98484 1.01799 0.95398 1.69985 1.36134 1.52394 0.98682 0.86194 0.84862 0.78532 0.76921 1.21959 1.21895 1.20526 1.20764 0.90252 0.95073 0.89252 0.95595 1.21602 0.99571 0.82682 0.97508 1.67356 1.08607 1.28214 1.12255 0.90348 0.90211 0.90653 0.84579 0.84180 0.83485 0.84504 0.92455 0.90685 0.92381 0.92389 0.92794 0.93901 0.94192 0.94104 0.92486 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.00 0.37 -0.43 16 2 C 0.12 1.34 6.78 -82.61 -0.56 0.78 16 3 C -0.16 -1.62 9.75 -39.32 -0.38 -2.00 16 4 C -0.08 -0.87 10.17 -39.31 -0.40 -1.27 16 5 C -0.12 -1.81 9.63 -39.06 -0.38 -2.19 16 6 C 0.10 1.77 6.48 -83.01 -0.54 1.24 16 7 C 0.57 11.81 7.62 -12.19 -0.09 11.72 16 8 O -0.53 -12.53 16.02 5.35 0.09 -12.44 16 9 N -0.57 -10.99 2.96 -174.81 -0.52 -11.50 16 10 C 0.07 1.20 6.11 -3.77 -0.02 1.18 16 11 C -0.12 -2.07 5.04 -26.77 -0.13 -2.21 16 12 C -0.10 -1.79 3.68 -88.43 -0.33 -2.12 16 13 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.14 -2.69 6.33 -24.32 -0.15 -2.85 16 15 C 0.18 4.37 4.62 -2.74 -0.01 4.36 16 16 N -0.59 -14.98 3.20 -164.16 -0.53 -15.51 16 17 C -0.21 -6.12 9.72 -15.06 -0.15 -6.26 16 18 H 0.08 2.41 6.49 -52.48 -0.34 2.07 16 19 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 20 N -0.92 -27.87 10.44 55.49 0.58 -27.29 16 21 Si 0.90 23.54 29.56 -169.99 -5.02 18.52 16 22 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 23 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 24 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.16 3.23 2.97 -68.07 -0.20 3.03 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 C 0.11 2.17 5.70 -4.54 -0.03 2.14 16 28 N -0.45 -6.65 6.31 -6.06 -0.04 -6.69 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.02 16 32 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.15 2.33 7.82 -52.48 -0.41 1.92 16 35 H 0.14 2.16 3.89 -80.21 -0.31 1.84 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.57 6.86 -51.93 -0.36 1.21 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.99 7.97 -51.93 -0.41 0.58 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.04 1.17 7.43 -51.93 -0.39 0.79 16 42 H 0.04 1.09 7.21 -51.93 -0.37 0.72 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.09 2.15 5.56 -51.92 -0.29 1.86 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -33.89 350.92 -9.92 -43.81 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.66 Total: 1.05 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -3.10 Total: 4.77 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.50 Total: -61.00 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.02 Total: 18.52 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.89 -9.92 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041935728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.967 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds