Wall clock time and date at job start Fri Apr 10 2020 23:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38598 * 119.54969 * 2 1 4 4 C 1.38586 * 119.35282 * 180.02562 * 3 2 1 5 5 C 1.38626 * 118.48547 * 0.26890 * 4 3 2 6 6 C 1.39269 * 119.06269 * 359.44474 * 5 4 3 7 7 C 1.48165 * 119.72688 * 180.27447 * 6 5 4 8 8 O 1.21516 * 119.99864 * 336.78415 * 7 6 5 9 9 N 1.34771 * 120.00339 * 156.78166 * 7 6 5 10 10 C 1.47157 * 121.21949 * 2.37180 * 9 7 6 11 11 C 1.52830 * 107.97845 * 237.28881 * 10 9 7 12 12 C 1.53096 * 110.58225 * 302.65402 * 11 10 9 13 13 H 1.08997 * 112.49407 * 289.43903 * 12 11 10 14 14 C 1.56029 * 106.38716 * 164.56373 * 12 11 10 15 15 C 1.54504 * 102.61293 * 281.62012 * 14 12 11 16 16 N 1.47432 * 107.15048 * 337.15785 * 15 14 12 17 17 C 1.36938 * 126.06072 * 178.37319 * 16 15 14 18 18 H 1.08003 * 119.99535 * 186.64650 * 17 16 15 19 19 C 1.38811 * 119.99958 * 6.64844 * 17 16 15 20 20 N 1.31618 * 119.99890 * 352.22675 * 19 17 16 21 21 Si 1.86798 * 119.99692 * 172.22422 * 19 17 16 22 22 H 1.48496 * 109.47116 * 94.95892 * 21 19 17 23 23 H 1.48502 * 109.46698 * 214.95933 * 21 19 17 24 24 H 1.48502 * 109.47304 * 334.95198 * 21 19 17 25 25 C 1.46476 * 107.87596 * 358.37606 * 16 15 14 26 26 H 1.09000 * 108.41933 * 270.10359 * 25 16 15 27 27 C 1.46762 * 121.21952 * 182.08801 * 9 7 6 28 28 N 1.31491 * 119.54863 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47477 * 90.00271 * 1 2 3 30 30 H 1.08997 * 109.47485 * 210.00007 * 1 2 3 31 31 H 1.08999 * 109.47378 * 330.00125 * 1 2 3 32 32 H 1.08004 * 120.32499 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.75707 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.46798 * 179.70141 * 5 4 3 35 35 H 1.08999 * 109.75374 * 356.91496 * 10 9 7 36 36 H 1.09001 * 109.75580 * 117.61712 * 10 9 7 37 37 H 1.09004 * 109.25547 * 62.94482 * 11 10 9 38 38 H 1.09005 * 109.25201 * 182.40984 * 11 10 9 39 39 H 1.08994 * 110.78697 * 39.90654 * 14 12 11 40 40 H 1.09001 * 110.77696 * 163.34439 * 14 12 11 41 41 H 1.08996 * 109.90098 * 217.77503 * 15 14 12 42 42 H 1.09003 * 110.04664 * 96.62121 * 15 14 12 43 43 H 0.97000 * 119.99424 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.23153 * 247.78983 * 27 9 7 45 45 H 1.09007 * 109.22667 * 7.15228 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5763 1.2009 -0.0005 5 6 4.2333 -0.0197 -0.0068 6 6 3.4820 -1.1924 -0.0005 7 6 4.1691 -2.5051 -0.0008 8 8 5.3057 -2.5959 -0.4210 9 7 3.5335 -3.5985 0.4649 10 6 2.1397 -3.5296 0.9319 11 6 2.1022 -4.0211 2.3786 12 6 2.6671 -5.4404 2.4797 13 1 2.0076 -6.1845 2.0331 14 6 2.9561 -5.6924 3.9921 15 6 4.2853 -4.9361 4.2122 16 7 4.9416 -4.8187 2.8972 17 6 6.1299 -4.1875 2.6429 18 1 6.4699 -4.0664 1.6249 19 6 6.8974 -3.7035 3.6933 20 7 6.4165 -3.7126 4.9185 21 14 8.6128 -3.0394 3.3681 22 1 8.5493 -1.5652 3.2007 23 1 9.4971 -3.3699 4.5144 24 1 9.1557 -3.6552 2.1306 25 6 4.0971 -5.4969 1.9111 26 1 4.4042 -6.5412 1.8546 27 6 4.2041 -4.9029 0.5190 28 7 2.1554 -1.1439 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6484 2.1399 -0.0004 33 1 4.1318 2.1271 -0.0001 34 1 5.3126 -0.0608 -0.0122 35 1 1.7853 -2.5000 0.8830 36 1 1.5106 -4.1658 0.3093 37 1 2.6967 -3.3523 3.0010 38 1 1.0711 -4.0191 2.7321 39 1 2.1646 -5.2721 4.6124 40 1 3.0797 -6.7572 4.1899 41 1 4.9224 -5.4968 4.8961 42 1 4.0879 -3.9440 4.6183 43 1 6.9528 -3.3740 5.6524 44 1 3.7371 -5.5768 -0.1992 45 1 5.2556 -4.7769 0.2608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041935728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:22 Heat of formation + Delta-G solvation = 26.298290 kcal Electronic energy + Delta-G solvation = -27895.234537 eV Core-core repulsion = 24299.059426 eV Total energy + Delta-G solvation = -3596.175111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96846 -40.73941 -39.39472 -36.61594 -34.71537 -33.99408 -33.66325 -32.72377 -30.71190 -30.05953 -28.63972 -26.63263 -26.33756 -24.54957 -23.94280 -23.11539 -21.76291 -21.44003 -19.92994 -18.61024 -18.42576 -17.66031 -17.09231 -16.88687 -16.61787 -16.40734 -15.98840 -15.71496 -15.47064 -15.13307 -14.84697 -14.57896 -14.30619 -14.25771 -13.94966 -13.69825 -13.30358 -13.18048 -13.10985 -13.03893 -12.92733 -12.83378 -12.65775 -12.52062 -12.33753 -12.06977 -11.66288 -11.46435 -11.35178 -11.31291 -11.19949 -10.90004 -10.67749 -10.01740 -9.91358 -9.49344 -8.81721 -7.87200 -5.16252 -0.32465 0.19444 1.34689 1.35293 1.46472 1.70389 2.03607 2.45974 2.76269 3.02080 3.30978 3.50460 3.66128 3.84731 3.88975 3.99558 4.01543 4.06449 4.11192 4.31518 4.37016 4.46087 4.54669 4.58910 4.63029 4.69515 4.72428 4.79743 4.88716 4.90712 4.99483 5.10050 5.12448 5.14726 5.15580 5.21812 5.27944 5.30526 5.52296 5.62928 5.63369 5.71157 5.78203 5.86345 6.21446 6.46167 6.72438 7.12532 7.16136 7.80906 8.45379 9.24255 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.005921 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.258301 B = 4727.410744 C = 5923.827721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.110 3.890 3 C -0.140 4.140 4 C -0.071 4.071 5 C -0.144 4.144 6 C 0.069 3.931 7 C 0.559 3.441 8 O -0.584 6.584 9 N -0.574 5.574 10 C 0.073 3.927 11 C -0.116 4.116 12 C -0.086 4.086 13 H 0.122 0.878 14 C -0.128 4.128 15 C 0.186 3.814 16 N -0.605 5.605 17 C -0.209 4.209 18 H 0.066 0.934 19 C -0.065 4.065 20 N -0.948 5.948 21 Si 0.956 3.044 22 H -0.294 1.294 23 H -0.286 1.286 24 H -0.279 1.279 25 C 0.143 3.857 26 H 0.030 0.970 27 C 0.112 3.888 28 N -0.460 5.460 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.184 0.816 33 H 0.173 0.827 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.025 0.975 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.003 0.997 42 H 0.000 1.000 43 H 0.243 0.757 44 H 0.095 0.905 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.728 7.521 -9.732 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.030 4.030 3 C -0.159 4.159 4 C -0.097 4.097 5 C -0.165 4.165 6 C -0.067 4.067 7 C 0.346 3.654 8 O -0.465 6.465 9 N -0.303 5.303 10 C -0.048 4.048 11 C -0.154 4.154 12 C -0.105 4.105 13 H 0.140 0.860 14 C -0.166 4.166 15 C 0.062 3.938 16 N -0.330 5.330 17 C -0.338 4.338 18 H 0.084 0.916 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.786 3.214 22 H -0.221 1.221 23 H -0.213 1.213 24 H -0.204 1.204 25 C 0.036 3.964 26 H 0.047 0.953 27 C -0.012 4.012 28 N -0.174 5.174 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.202 0.798 33 H 0.191 0.809 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.107 0.893 37 H 0.044 0.956 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.021 0.979 42 H 0.019 0.981 43 H 0.053 0.947 44 H 0.113 0.887 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.393 6.737 -9.839 21.920 hybrid contribution 2.612 0.896 0.411 2.792 sum -15.780 7.633 -9.427 19.904 Atomic orbital electron populations 1.20869 0.85173 1.05074 1.04562 1.22268 0.99194 0.87944 0.93570 1.22638 0.94321 1.00682 0.98246 1.21987 0.95524 0.97677 0.94488 1.22145 1.01677 0.93239 0.99425 1.20887 0.90750 0.93285 1.01768 1.18362 0.84831 0.84250 0.77933 1.90708 1.19568 1.85829 1.50349 1.47833 1.14914 1.07599 1.59960 1.23069 0.79989 1.07801 0.93904 1.21801 1.01208 0.95615 0.96764 1.22454 0.94807 0.97990 0.95282 0.85970 1.23012 0.96787 1.00079 0.96720 1.20976 0.90577 0.95680 0.86616 1.44478 1.21095 1.63232 1.04162 1.19129 0.94603 1.28021 0.92082 0.91610 1.25385 1.01558 1.03261 0.95524 1.70170 1.36818 1.53784 0.99031 0.85370 0.81547 0.77701 0.76756 1.22131 1.21257 1.20422 1.21078 0.91933 0.94416 0.88967 0.95261 1.21504 0.98007 0.83993 0.97696 1.67216 1.07065 1.30124 1.13005 0.88693 0.90343 0.87832 0.79849 0.80933 0.85810 0.83830 0.89269 0.95561 0.88411 0.90040 0.91133 0.97885 0.98127 0.94736 0.88744 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.17 71.23 0.72 -0.36 16 2 C 0.11 2.20 6.78 42.69 0.29 2.48 16 3 C -0.14 -2.30 9.75 22.44 0.22 -2.08 16 4 C -0.07 -1.51 10.17 22.45 0.23 -1.28 16 5 C -0.14 -4.60 9.63 22.61 0.22 -4.39 16 6 C 0.07 2.45 6.48 41.89 0.27 2.72 16 7 C 0.56 24.30 7.62 86.88 0.66 24.97 16 8 O -0.58 -29.87 16.02 -3.76 -0.06 -29.93 16 9 N -0.57 -22.40 2.96 -825.26 -2.44 -24.84 16 10 C 0.07 2.22 6.11 86.20 0.53 2.75 16 11 C -0.12 -3.65 5.04 30.57 0.15 -3.49 16 12 C -0.09 -2.76 3.68 -9.38 -0.03 -2.79 16 13 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 14 C -0.13 -4.58 6.33 32.16 0.20 -4.38 16 15 C 0.19 9.49 4.62 86.71 0.40 9.89 16 16 N -0.60 -32.09 3.20 -673.27 -2.15 -34.25 16 17 C -0.21 -12.63 9.72 84.03 0.82 -11.81 16 18 H 0.07 4.15 6.49 -2.91 -0.02 4.13 16 19 C -0.06 -3.99 5.48 84.86 0.47 -3.53 16 20 N -0.95 -60.30 10.44 21.65 0.23 -60.08 16 21 Si 0.96 50.93 29.56 68.60 2.03 52.96 16 22 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 23 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 24 H -0.28 -14.62 7.11 99.48 0.71 -13.91 16 25 C 0.14 5.93 2.97 44.91 0.13 6.06 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 C 0.11 4.47 5.70 85.91 0.49 4.96 16 28 N -0.46 -13.00 6.31 -173.09 -1.09 -14.10 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.12 4.38 7.82 -2.91 -0.02 4.36 16 35 H 0.15 4.26 3.89 -58.22 -0.23 4.04 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.03 1.08 6.86 -2.38 -0.02 1.07 16 38 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 39 H 0.08 2.57 7.97 -2.39 -0.02 2.55 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.00 0.17 7.43 -2.39 -0.02 0.15 16 42 H 0.00 0.03 7.21 -2.39 -0.02 0.01 16 43 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 45 H 0.05 2.60 5.56 -2.38 -0.01 2.59 16 Total: -1.00 -83.47 350.92 3.05 -80.42 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.78 Total: 10.10 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 5.77 Total: 19.72 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -5.46 Total: -133.26 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.06 Total: -29.93 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.03 Total: 52.96 kcal Total: -83.47 3.05 -80.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041935728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.722 kcal (2) G-P(sol) polarization free energy of solvation -83.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds