Wall clock time and date at job start Fri Apr 10 2020 23:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38605 * 119.54649 * 2 1 4 4 C 1.38586 * 119.35139 * 180.29472 * 3 2 1 5 5 C 1.38637 * 118.48591 * 359.48258 * 4 3 2 6 6 C 1.39265 * 119.05823 * 0.49673 * 5 4 3 7 7 C 1.48168 * 119.72239 * 179.74644 * 6 5 4 8 8 O 1.21523 * 119.99740 * 8.14678 * 7 6 5 9 9 N 1.34770 * 120.00514 * 188.15049 * 7 6 5 10 10 C 1.47155 * 121.21347 * 10.44592 * 9 7 6 11 11 C 1.53334 * 107.71683 * 122.69125 * 10 9 7 12 12 C 1.53097 * 110.49827 * 57.57460 * 11 10 9 13 13 H 1.08997 * 113.06047 * 70.86767 * 12 11 10 14 14 C 1.56018 * 106.39362 * 195.29336 * 12 11 10 15 15 C 1.54501 * 102.61577 * 78.38080 * 14 12 11 16 16 N 1.47436 * 107.14627 * 22.84202 * 15 14 12 17 17 C 1.36938 * 126.06106 * 181.58672 * 16 15 14 18 18 H 1.07995 * 120.00454 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99732 * 0.04619 * 17 16 15 20 20 N 1.31621 * 120.00483 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99795 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46985 * 60.00176 * 21 19 17 23 23 H 1.48506 * 109.47107 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47331 * 300.00063 * 21 19 17 25 25 C 1.46464 * 107.88133 * 1.62619 * 16 15 14 26 26 H 1.09002 * 108.42181 * 89.23613 * 25 16 15 27 27 C 1.46757 * 121.21661 * 190.73229 * 9 7 6 28 28 N 1.31494 * 119.55484 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47076 * 90.00215 * 1 2 3 30 30 H 1.09002 * 109.47195 * 210.00116 * 1 2 3 31 31 H 1.09001 * 109.47179 * 330.00260 * 1 2 3 32 32 H 1.08004 * 120.32582 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.75466 * 179.69630 * 4 3 2 34 34 H 1.08001 * 120.46949 * 180.23645 * 5 4 3 35 35 H 1.09000 * 109.76371 * 242.34244 * 10 9 7 36 36 H 1.09006 * 109.75811 * 3.09896 * 10 9 7 37 37 H 1.09003 * 109.39307 * 297.24899 * 11 10 9 38 38 H 1.08997 * 109.19270 * 177.76937 * 11 10 9 39 39 H 1.09003 * 110.78718 * 320.09701 * 14 12 11 40 40 H 1.09009 * 110.78087 * 196.66460 * 14 12 11 41 41 H 1.08998 * 109.90303 * 263.46165 * 15 14 12 42 42 H 1.09004 * 109.90396 * 142.21934 * 15 14 12 43 43 H 0.96999 * 120.00602 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.22835 * 352.82726 * 27 9 7 45 45 H 1.09002 * 109.23038 * 112.23725 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2011 -0.0062 5 6 4.2334 -0.0196 -0.0012 6 6 3.4821 -1.1922 -0.0008 7 6 4.1692 -2.5050 -0.0012 8 8 5.3741 -2.5601 0.1472 9 7 3.4581 -3.6378 -0.1663 10 6 2.0443 -3.5984 -0.5727 11 6 1.9070 -4.4144 -1.8635 12 6 2.3970 -5.8484 -1.6460 13 1 1.7303 -6.4364 -1.0152 14 6 2.5913 -6.4674 -3.0649 15 6 3.9413 -5.8649 -3.5139 16 7 4.6727 -5.4793 -2.2932 17 6 5.9022 -4.8783 -2.2461 18 1 6.3497 -4.6379 -1.2931 19 6 6.5732 -4.5776 -3.4235 20 7 6.0280 -4.8706 -4.5851 21 14 8.2502 -3.7571 -3.3593 22 1 9.1986 -4.6266 -2.6179 23 1 8.7507 -3.5451 -4.7413 24 1 8.1347 -2.4480 -2.6679 25 6 3.8514 -5.8538 -1.1397 26 1 4.1025 -6.8757 -0.8554 27 6 4.0636 -4.9556 0.0588 28 7 2.1556 -1.1438 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6484 2.1399 0.0004 33 1 4.1317 2.1273 -0.0113 34 1 5.3127 -0.0607 -0.0020 35 1 1.4236 -4.0344 0.2100 36 1 1.7412 -2.5669 -0.7525 37 1 2.4986 -3.9479 -2.6513 38 1 0.8598 -4.4343 -2.1652 39 1 1.7884 -6.1593 -3.7346 40 1 2.6528 -7.5543 -3.0076 41 1 3.7672 -4.9864 -4.1353 42 1 4.5129 -6.6082 -4.0697 43 1 6.4967 -4.6601 -5.4078 44 1 5.1330 -4.8344 0.2316 45 1 3.6080 -5.4150 0.9360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041935729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:25 Heat of formation + Delta-G solvation = 51.326916 kcal Electronic energy + Delta-G solvation = -27860.969379 eV Core-core repulsion = 24265.879591 eV Total energy + Delta-G solvation = -3595.089788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74835 -39.33618 -37.78681 -34.94758 -33.08206 -32.76249 -32.54981 -30.93466 -29.05511 -28.22798 -27.79986 -25.15371 -24.38269 -23.21165 -22.53200 -22.01766 -20.04519 -19.85432 -18.37501 -17.15470 -16.58608 -16.43445 -15.89886 -15.29398 -15.13115 -14.77010 -14.46149 -14.10755 -13.98605 -13.78479 -13.42990 -13.35693 -12.98075 -12.74650 -12.56357 -12.41735 -12.29244 -11.94188 -11.83160 -11.41347 -11.28613 -11.15655 -10.74855 -10.71508 -10.61423 -10.06829 -10.00408 -9.87485 -9.74075 -9.72533 -9.55257 -9.38713 -9.00155 -8.67783 -8.43145 -7.94553 -6.66599 -5.54504 -2.85747 0.71598 1.13190 3.04972 3.41599 3.54783 3.56726 3.62999 3.95220 4.09393 4.55660 4.66680 4.75974 4.89593 5.03090 5.19268 5.28455 5.37480 5.41398 5.45498 5.50311 5.51439 5.68038 5.74933 5.84359 5.87366 5.94781 5.99152 6.03567 6.07830 6.14510 6.23970 6.34758 6.39847 6.43175 6.53544 6.64565 6.71212 6.77708 6.85414 7.10732 7.27193 7.69657 7.71924 7.73987 8.00295 8.02763 8.40048 8.68949 9.39318 10.00185 10.64816 11.58105 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.005816 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.998806 B = 4813.118031 C = 6103.865621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.116 3.884 3 C -0.158 4.158 4 C -0.077 4.077 5 C -0.119 4.119 6 C 0.100 3.900 7 C 0.569 3.431 8 O -0.523 6.523 9 N -0.572 5.572 10 C 0.080 3.920 11 C -0.122 4.122 12 C -0.103 4.103 13 H 0.074 0.926 14 C -0.144 4.144 15 C 0.179 3.821 16 N -0.588 5.588 17 C -0.207 4.207 18 H 0.083 0.917 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.284 1.284 25 C 0.155 3.845 26 H 0.025 0.975 27 C 0.112 3.888 28 N -0.449 5.449 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.055 0.945 36 H 0.139 0.861 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.248 0.752 44 H 0.094 0.906 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.038 9.240 9.544 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.023 4.023 3 C -0.178 4.178 4 C -0.103 4.103 5 C -0.140 4.140 6 C -0.037 4.037 7 C 0.355 3.645 8 O -0.398 6.398 9 N -0.303 5.303 10 C -0.043 4.043 11 C -0.160 4.160 12 C -0.123 4.123 13 H 0.092 0.908 14 C -0.183 4.183 15 C 0.055 3.945 16 N -0.313 5.313 17 C -0.336 4.336 18 H 0.100 0.900 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.211 1.211 25 C 0.046 3.954 26 H 0.042 0.958 27 C -0.012 4.012 28 N -0.163 5.163 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.073 0.927 36 H 0.155 0.845 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.112 0.888 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.626 8.481 9.460 18.630 hybrid contribution 1.368 1.127 -0.259 1.791 sum -12.258 9.607 9.201 18.089 Atomic orbital electron populations 1.20729 0.88430 1.03573 1.03333 1.21485 0.97255 0.88395 0.95147 1.22097 0.94981 0.99226 1.01542 1.21609 0.94417 0.98248 0.95981 1.22146 1.02546 0.91736 0.97588 1.21403 0.89332 0.94799 0.98185 1.17687 0.86084 0.82786 0.77980 1.90791 1.12921 1.86065 1.50060 1.47566 1.12053 1.05095 1.65559 1.22894 0.80718 1.05261 0.95407 1.21939 1.00006 0.95498 0.98553 1.22404 0.96789 0.95898 0.97172 0.90818 1.23171 1.00094 0.99125 0.95888 1.21202 0.87055 0.97640 0.88635 1.44291 1.17151 1.70396 0.99472 1.19036 0.91432 1.30104 0.93004 0.89967 1.24691 0.98727 1.01798 0.95345 1.69957 1.38055 1.53426 0.96323 0.86268 0.84234 0.79840 0.76000 1.21346 1.22009 1.21085 1.20681 0.90293 0.95257 0.89136 0.95777 1.21450 1.00465 0.82282 0.96972 1.67492 1.08665 1.27931 1.12165 0.90183 0.90226 0.90703 0.84599 0.84215 0.83384 0.92687 0.84512 0.90620 0.92450 0.92416 0.92877 0.93829 0.94191 0.94140 0.88802 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.01 0.37 -0.42 16 2 C 0.12 1.31 6.78 -82.60 -0.56 0.75 16 3 C -0.16 -1.56 9.75 -39.32 -0.38 -1.94 16 4 C -0.08 -0.84 10.17 -39.31 -0.40 -1.24 16 5 C -0.12 -1.77 9.63 -39.05 -0.38 -2.14 16 6 C 0.10 1.70 6.59 -83.01 -0.55 1.15 16 7 C 0.57 11.68 7.65 -12.18 -0.09 11.59 16 8 O -0.52 -12.43 15.80 5.35 0.08 -12.35 16 9 N -0.57 -11.02 2.96 -174.78 -0.52 -11.54 16 10 C 0.08 1.29 5.97 -3.51 -0.02 1.27 16 11 C -0.12 -2.09 5.06 -26.51 -0.13 -2.23 16 12 C -0.10 -1.82 3.68 -88.43 -0.33 -2.15 16 13 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.14 -2.76 6.33 -24.33 -0.15 -2.91 16 15 C 0.18 4.45 4.61 -2.74 -0.01 4.44 16 16 N -0.59 -15.15 3.20 -164.42 -0.53 -15.68 16 17 C -0.21 -5.99 9.70 -15.06 -0.15 -6.14 16 18 H 0.08 2.42 6.47 -52.49 -0.34 2.08 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 20 N -0.93 -28.41 10.38 55.49 0.58 -27.83 16 21 Si 0.91 24.01 29.55 -169.99 -5.02 18.98 16 22 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 23 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.28 -7.63 7.11 56.52 0.40 -7.23 16 25 C 0.15 3.25 2.97 -68.30 -0.20 3.04 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 C 0.11 2.21 5.69 -4.78 -0.03 2.18 16 28 N -0.45 -6.52 6.11 -6.06 -0.04 -6.55 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.15 2.25 7.66 -52.49 -0.40 1.85 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.14 2.17 4.08 -79.69 -0.33 1.84 16 37 H 0.08 1.61 6.85 -51.93 -0.36 1.26 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.00 7.97 -51.93 -0.41 0.59 16 40 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 41 H 0.04 1.21 7.04 -51.93 -0.37 0.84 16 42 H 0.04 1.10 7.57 -51.93 -0.39 0.71 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.09 2.12 5.54 -51.93 -0.29 1.83 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -34.40 350.38 -9.94 -44.34 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.67 Total: 0.50 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -3.11 Total: 4.85 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.50 Total: -61.60 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.02 Total: 18.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.40 -9.94 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041935729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.667 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds