Wall clock time and date at job start Fri Apr 10 2020 23:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38605 * 119.54649 * 2 1 4 4 C 1.38586 * 119.35139 * 180.29472 * 3 2 1 5 5 C 1.38637 * 118.48591 * 359.48258 * 4 3 2 6 6 C 1.39265 * 119.05823 * 0.49673 * 5 4 3 7 7 C 1.48168 * 119.72239 * 179.74644 * 6 5 4 8 8 O 1.21523 * 119.99740 * 8.14678 * 7 6 5 9 9 N 1.34770 * 120.00514 * 188.15049 * 7 6 5 10 10 C 1.47155 * 121.21347 * 10.44592 * 9 7 6 11 11 C 1.53334 * 107.71683 * 122.69125 * 10 9 7 12 12 C 1.53097 * 110.49827 * 57.57460 * 11 10 9 13 13 H 1.08997 * 113.06047 * 70.86767 * 12 11 10 14 14 C 1.56018 * 106.39362 * 195.29336 * 12 11 10 15 15 C 1.54501 * 102.61577 * 78.38080 * 14 12 11 16 16 N 1.47436 * 107.14627 * 22.84202 * 15 14 12 17 17 C 1.36938 * 126.06106 * 181.58672 * 16 15 14 18 18 H 1.07995 * 120.00454 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99732 * 0.04619 * 17 16 15 20 20 N 1.31621 * 120.00483 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99795 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46985 * 60.00176 * 21 19 17 23 23 H 1.48506 * 109.47107 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47331 * 300.00063 * 21 19 17 25 25 C 1.46464 * 107.88133 * 1.62619 * 16 15 14 26 26 H 1.09002 * 108.42181 * 89.23613 * 25 16 15 27 27 C 1.46757 * 121.21661 * 190.73229 * 9 7 6 28 28 N 1.31494 * 119.55484 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47076 * 90.00215 * 1 2 3 30 30 H 1.09002 * 109.47195 * 210.00116 * 1 2 3 31 31 H 1.09001 * 109.47179 * 330.00260 * 1 2 3 32 32 H 1.08004 * 120.32582 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.75466 * 179.69630 * 4 3 2 34 34 H 1.08001 * 120.46949 * 180.23645 * 5 4 3 35 35 H 1.09000 * 109.76371 * 242.34244 * 10 9 7 36 36 H 1.09006 * 109.75811 * 3.09896 * 10 9 7 37 37 H 1.09003 * 109.39307 * 297.24899 * 11 10 9 38 38 H 1.08997 * 109.19270 * 177.76937 * 11 10 9 39 39 H 1.09003 * 110.78718 * 320.09701 * 14 12 11 40 40 H 1.09009 * 110.78087 * 196.66460 * 14 12 11 41 41 H 1.08998 * 109.90303 * 263.46165 * 15 14 12 42 42 H 1.09004 * 109.90396 * 142.21934 * 15 14 12 43 43 H 0.96999 * 120.00602 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.22835 * 352.82726 * 27 9 7 45 45 H 1.09002 * 109.23038 * 112.23725 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2011 -0.0062 5 6 4.2334 -0.0196 -0.0012 6 6 3.4821 -1.1922 -0.0008 7 6 4.1692 -2.5050 -0.0012 8 8 5.3741 -2.5601 0.1472 9 7 3.4581 -3.6378 -0.1663 10 6 2.0443 -3.5984 -0.5727 11 6 1.9070 -4.4144 -1.8635 12 6 2.3970 -5.8484 -1.6460 13 1 1.7303 -6.4364 -1.0152 14 6 2.5913 -6.4674 -3.0649 15 6 3.9413 -5.8649 -3.5139 16 7 4.6727 -5.4793 -2.2932 17 6 5.9022 -4.8783 -2.2461 18 1 6.3497 -4.6379 -1.2931 19 6 6.5732 -4.5776 -3.4235 20 7 6.0280 -4.8706 -4.5851 21 14 8.2502 -3.7571 -3.3593 22 1 9.1986 -4.6266 -2.6179 23 1 8.7507 -3.5451 -4.7413 24 1 8.1347 -2.4480 -2.6679 25 6 3.8514 -5.8538 -1.1397 26 1 4.1025 -6.8757 -0.8554 27 6 4.0636 -4.9556 0.0588 28 7 2.1556 -1.1438 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6484 2.1399 0.0004 33 1 4.1317 2.1273 -0.0113 34 1 5.3127 -0.0607 -0.0020 35 1 1.4236 -4.0344 0.2100 36 1 1.7412 -2.5669 -0.7525 37 1 2.4986 -3.9479 -2.6513 38 1 0.8598 -4.4343 -2.1652 39 1 1.7884 -6.1593 -3.7346 40 1 2.6528 -7.5543 -3.0076 41 1 3.7672 -4.9864 -4.1353 42 1 4.5129 -6.6082 -4.0697 43 1 6.4967 -4.6601 -5.4078 44 1 5.1330 -4.8344 0.2316 45 1 3.6080 -5.4150 0.9360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041935729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:24 Heat of formation + Delta-G solvation = 28.930915 kcal Electronic energy + Delta-G solvation = -27861.940543 eV Core-core repulsion = 24265.879591 eV Total energy + Delta-G solvation = -3596.060952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.93952 -40.73171 -39.36337 -36.59305 -34.69500 -33.96902 -33.64442 -32.69925 -30.69752 -30.02910 -28.62162 -26.60956 -26.31417 -24.53674 -23.93546 -23.08532 -21.75126 -21.40990 -19.93260 -18.60620 -18.35514 -17.65004 -17.03062 -16.77737 -16.60633 -16.43701 -15.99308 -15.70472 -15.42409 -15.12163 -14.85211 -14.59990 -14.30841 -14.22589 -13.93753 -13.71011 -13.25687 -13.14393 -13.07955 -13.02465 -12.90987 -12.79315 -12.65342 -12.48733 -12.32570 -12.08205 -11.67902 -11.44155 -11.33153 -11.26190 -11.16864 -10.90328 -10.67453 -10.00920 -9.86171 -9.44141 -8.80479 -7.83392 -5.13355 -0.34641 0.20909 1.33541 1.37736 1.45192 1.76411 2.06126 2.47984 2.81651 3.02004 3.34802 3.52081 3.68084 3.85527 3.89759 4.01597 4.02396 4.07760 4.12608 4.32778 4.39227 4.47862 4.56685 4.60746 4.64477 4.71266 4.73687 4.80764 4.89654 4.91305 5.00582 5.11945 5.13231 5.15914 5.16892 5.24153 5.29134 5.31666 5.53882 5.65072 5.65659 5.71818 5.80277 5.90815 6.23265 6.49999 6.75268 7.15243 7.20901 7.83292 8.46572 9.27507 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.005816 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.998806 B = 4813.118031 C = 6103.865621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.110 3.890 3 C -0.139 4.139 4 C -0.071 4.071 5 C -0.141 4.141 6 C 0.066 3.934 7 C 0.554 3.446 8 O -0.578 6.578 9 N -0.576 5.576 10 C 0.080 3.920 11 C -0.116 4.116 12 C -0.086 4.086 13 H 0.122 0.878 14 C -0.129 4.129 15 C 0.187 3.813 16 N -0.605 5.605 17 C -0.200 4.200 18 H 0.068 0.932 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.957 3.043 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.294 1.294 25 C 0.142 3.858 26 H 0.029 0.971 27 C 0.113 3.887 28 N -0.460 5.460 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.184 0.816 33 H 0.174 0.826 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.024 0.976 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.003 0.997 42 H 0.000 1.000 43 H 0.242 0.758 44 H 0.054 0.946 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.151 10.689 11.027 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.030 4.030 3 C -0.158 4.158 4 C -0.097 4.097 5 C -0.162 4.162 6 C -0.070 4.070 7 C 0.342 3.658 8 O -0.458 6.458 9 N -0.306 5.306 10 C -0.041 4.041 11 C -0.154 4.154 12 C -0.106 4.106 13 H 0.140 0.860 14 C -0.167 4.167 15 C 0.062 3.938 16 N -0.330 5.330 17 C -0.329 4.329 18 H 0.086 0.914 19 C -0.260 4.260 20 N -0.604 5.604 21 Si 0.787 3.213 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.221 1.221 25 C 0.035 3.965 26 H 0.047 0.953 27 C -0.010 4.010 28 N -0.173 5.173 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.201 0.799 33 H 0.192 0.808 34 H 0.145 0.855 35 H 0.106 0.894 36 H 0.161 0.839 37 H 0.043 0.957 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.022 0.978 42 H 0.018 0.982 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.781 9.901 10.969 23.119 hybrid contribution 2.549 0.763 -0.647 2.739 sum -15.232 10.663 10.322 21.266 Atomic orbital electron populations 1.20870 0.85292 1.05168 1.04414 1.22285 0.99187 0.88009 0.93544 1.22653 0.94408 1.00629 0.98094 1.22002 0.95444 0.97716 0.94501 1.22174 1.01821 0.93122 0.99124 1.20933 0.90715 0.93281 1.02049 1.18419 0.85854 0.84521 0.77007 1.90734 1.15255 1.87116 1.52670 1.47782 1.13262 1.04512 1.65009 1.23135 0.79163 1.06074 0.95731 1.21894 1.01276 0.94751 0.97518 1.22465 0.94935 0.96784 0.96370 0.85979 1.23037 0.96730 0.99805 0.97171 1.20958 0.89759 0.95155 0.87923 1.44487 1.16942 1.69863 1.01720 1.19102 0.92796 1.28828 0.92223 0.91421 1.25339 1.01813 1.03472 0.95392 1.70150 1.38916 1.54949 0.96356 0.85451 0.81360 0.78530 0.75942 1.20548 1.21418 1.22098 1.21005 0.92060 0.95295 0.88132 0.95333 1.21366 0.98806 0.83019 0.97858 1.67316 1.07190 1.29916 1.12919 0.89141 0.90234 0.87606 0.79884 0.80831 0.85531 0.89449 0.83882 0.95696 0.88511 0.90139 0.91148 0.97837 0.98200 0.94893 0.92785 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.17 71.24 0.72 -0.32 16 2 C 0.11 2.10 6.78 42.70 0.29 2.39 16 3 C -0.14 -2.13 9.75 22.44 0.22 -1.91 16 4 C -0.07 -1.40 10.17 22.45 0.23 -1.18 16 5 C -0.14 -4.31 9.63 22.61 0.22 -4.09 16 6 C 0.07 2.29 6.59 41.89 0.28 2.57 16 7 C 0.55 24.04 7.65 86.88 0.67 24.70 16 8 O -0.58 -29.92 15.80 -3.79 -0.06 -29.98 16 9 N -0.58 -22.46 2.96 -825.16 -2.44 -24.90 16 10 C 0.08 2.43 5.97 86.37 0.52 2.95 16 11 C -0.12 -3.73 5.06 30.74 0.16 -3.58 16 12 C -0.09 -2.80 3.68 -9.38 -0.03 -2.83 16 13 H 0.12 2.95 8.14 -2.39 -0.02 2.94 16 14 C -0.13 -4.71 6.33 32.15 0.20 -4.50 16 15 C 0.19 9.66 4.61 86.71 0.40 10.06 16 16 N -0.61 -32.50 3.20 -674.10 -2.15 -34.66 16 17 C -0.20 -12.22 9.70 84.03 0.81 -11.41 16 18 H 0.07 4.29 6.47 -2.91 -0.02 4.27 16 19 C -0.07 -4.28 5.49 84.86 0.47 -3.82 16 20 N -0.95 -61.60 10.38 21.65 0.22 -61.37 16 21 Si 0.96 52.08 29.55 68.60 2.03 54.11 16 22 H -0.28 -14.68 7.11 99.48 0.71 -13.97 16 23 H -0.29 -15.28 7.11 99.48 0.71 -14.58 16 24 H -0.29 -16.28 7.11 99.48 0.71 -15.57 16 25 C 0.14 5.92 2.97 44.77 0.13 6.05 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 C 0.11 4.51 5.69 85.76 0.49 5.00 16 28 N -0.46 -12.69 6.11 -173.09 -1.06 -13.74 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 0.48 8.08 -2.39 -0.02 0.47 16 32 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.13 4.26 7.66 -2.91 -0.02 4.24 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.14 4.28 4.08 -57.20 -0.23 4.05 16 37 H 0.02 1.05 6.85 -2.39 -0.02 1.03 16 38 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.08 2.59 7.97 -2.39 -0.02 2.57 16 40 H 0.07 2.34 8.14 -2.38 -0.02 2.33 16 41 H 0.00 0.20 7.04 -2.39 -0.02 0.18 16 42 H 0.00 -0.01 7.57 -2.39 -0.02 -0.03 16 43 H 0.24 15.32 8.31 -92.71 -0.77 14.54 16 44 H 0.05 2.59 5.54 -2.39 -0.01 2.58 16 45 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -84.99 350.38 3.07 -81.92 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.77 Total: 8.53 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 5.76 Total: 20.09 kcal Atomic # 7 Polarization: -129.24 SS G_CDS: -5.43 Total: -134.67 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.06 Total: -29.98 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.03 Total: 54.11 kcal Total: -84.99 3.07 -81.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041935729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.851 kcal (2) G-P(sol) polarization free energy of solvation -84.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds