Wall clock time and date at job start Fri Apr 10 2020 23:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38605 * 119.54848 * 2 1 4 4 C 1.38582 * 119.34970 * 180.28139 * 3 2 1 5 5 C 1.38633 * 118.49061 * 359.97438 * 4 3 2 6 6 C 1.39266 * 119.05983 * 0.02562 * 5 4 3 7 7 C 1.48168 * 119.72116 * 180.02562 * 6 5 4 8 8 O 1.21518 * 120.00125 * 9.71430 * 7 6 5 9 9 N 1.34775 * 119.99899 * 189.72279 * 7 6 5 10 10 C 1.46596 * 119.75490 * 7.50464 * 9 7 6 11 11 C 1.53883 * 110.71258 * 132.26031 * 10 9 7 12 12 C 1.51980 * 107.28774 * 51.81121 * 11 10 9 13 13 H 1.08997 * 111.01364 * 57.33152 * 12 11 10 14 14 C 1.53700 * 115.00388 * 184.55114 * 12 11 10 15 15 C 1.55301 * 101.81280 * 153.46332 * 14 12 11 16 16 N 1.48154 * 107.04130 * 337.55256 * 15 14 12 17 17 C 1.36940 * 126.39240 * 174.99991 * 16 15 14 18 18 H 1.08006 * 119.99704 * 188.09706 * 17 16 15 19 19 C 1.38811 * 120.00042 * 8.09939 * 17 16 15 20 20 N 1.31612 * 120.00033 * 355.29275 * 19 17 16 21 21 Si 1.86800 * 119.99627 * 175.29296 * 19 17 16 22 22 H 1.48505 * 109.46942 * 94.59900 * 21 19 17 23 23 H 1.48501 * 109.47009 * 214.59597 * 21 19 17 24 24 H 1.48497 * 109.47456 * 334.60178 * 21 19 17 25 25 C 1.45501 * 107.20549 * 355.00226 * 16 15 14 26 26 H 1.08999 * 109.57113 * 273.36328 * 25 16 15 27 27 C 1.47802 * 119.75182 * 187.23223 * 9 7 6 28 28 N 1.31499 * 119.55277 * 180.27533 * 2 1 3 29 29 H 1.09003 * 109.47040 * 269.72381 * 1 2 3 30 30 H 1.08992 * 109.47142 * 29.72268 * 1 2 3 31 31 H 1.09000 * 109.47147 * 149.73033 * 1 2 3 32 32 H 1.08001 * 120.32617 * 0.25903 * 3 2 1 33 33 H 1.08009 * 120.75506 * 180.02562 * 4 3 2 34 34 H 1.08005 * 120.46858 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.22932 * 252.58536 * 10 9 7 36 36 H 1.09008 * 109.22159 * 11.98755 * 10 9 7 37 37 H 1.09001 * 109.89036 * 171.25379 * 11 10 9 38 38 H 1.09001 * 109.89454 * 292.28614 * 11 10 9 39 39 H 1.09004 * 110.96051 * 271.59234 * 14 12 11 40 40 H 1.08995 * 110.96385 * 35.29150 * 14 12 11 41 41 H 1.09005 * 109.91839 * 96.90482 * 15 14 12 42 42 H 1.09006 * 109.91649 * 218.00492 * 15 14 12 43 43 H 0.97003 * 119.99700 * 180.02562 * 20 19 17 44 44 H 1.09001 * 110.06257 * 350.47565 * 27 9 7 45 45 H 1.09007 * 110.05781 * 112.03312 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2010 -0.0059 5 6 4.2334 -0.0197 -0.0112 6 6 3.4821 -1.1924 -0.0108 7 6 4.1692 -2.5051 -0.0158 8 8 5.3706 -2.5627 0.1575 9 7 3.4618 -3.6352 -0.2126 10 6 2.0462 -3.5520 -0.5843 11 6 1.7408 -4.4777 -1.7750 12 6 2.2705 -5.8577 -1.4217 13 1 1.8248 -6.2223 -0.4962 14 6 2.1552 -6.9041 -2.5415 15 6 3.3164 -7.8741 -2.1910 16 7 4.2824 -7.1140 -1.3640 17 6 5.4047 -7.6143 -0.7596 18 1 5.9676 -6.9998 -0.0725 19 6 5.8191 -8.9112 -1.0302 20 7 5.0840 -9.6910 -1.7942 21 14 7.4200 -9.5496 -0.3098 22 1 7.1395 -10.2724 0.9567 23 1 8.0632 -10.4757 -1.2763 24 1 8.3301 -8.4083 -0.0372 25 6 3.8158 -5.7367 -1.3137 26 1 4.1997 -5.1895 -2.1747 27 6 4.1206 -4.9492 -0.0580 28 7 2.1556 -1.1439 -0.0055 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 0.8924 -0.5095 31 1 -0.3633 -0.8875 -0.5180 32 1 1.6485 2.1399 0.0042 33 1 4.1319 2.1272 -0.0056 34 1 5.3126 -0.0608 -0.0163 35 1 1.4335 -3.8481 0.2672 36 1 1.8069 -2.5245 -0.8585 37 1 0.6646 -4.5250 -1.9414 38 1 2.2384 -4.1063 -2.6708 39 1 1.1937 -7.4158 -2.4996 40 1 2.3093 -6.4476 -3.5192 41 1 2.9326 -8.7242 -1.6270 42 1 3.7982 -8.2219 -3.1048 43 1 5.3734 -10.5974 -1.9830 44 1 5.1975 -4.8175 0.0473 45 1 3.7194 -5.4686 0.8123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041935730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:27 Heat of formation + Delta-G solvation = 50.238700 kcal Electronic energy + Delta-G solvation = -26869.376161 eV Core-core repulsion = 23274.239184 eV Total energy + Delta-G solvation = -3595.136977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.03689 -39.51592 -38.04625 -35.38084 -33.29497 -33.02841 -32.63734 -31.13220 -29.37047 -28.37610 -27.98078 -25.26263 -24.51367 -23.17694 -22.55126 -21.95570 -20.21146 -19.87158 -19.18994 -17.38425 -16.80018 -16.54587 -16.10549 -15.61121 -15.35826 -14.72586 -14.53522 -14.50795 -14.13346 -13.85127 -13.61896 -13.55961 -13.16516 -12.87327 -12.74262 -12.58807 -12.39825 -12.23404 -12.01030 -11.80459 -11.46416 -11.29052 -10.91125 -10.70559 -10.69512 -10.23102 -10.15897 -10.09772 -9.89071 -9.82929 -9.61808 -9.41594 -9.24302 -8.92825 -8.56114 -8.29413 -6.78323 -5.68548 -3.01372 0.46647 0.90752 2.73930 3.09487 3.44689 3.50629 3.53574 3.64217 3.85155 4.35645 4.49732 4.56060 4.68789 4.79770 5.02457 5.12832 5.21095 5.24622 5.27661 5.31041 5.33824 5.51816 5.68356 5.71064 5.75708 5.80420 5.82893 5.88158 5.96866 6.04855 6.16568 6.22676 6.23485 6.32288 6.43473 6.45215 6.61872 6.65203 6.80891 6.87615 7.14745 7.45448 7.59000 7.66780 7.69212 7.85666 8.27326 8.31493 9.23829 9.86852 10.54995 11.44665 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.003592 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.870757 B = 7794.075905 C = 8891.920637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.118 3.882 3 C -0.155 4.155 4 C -0.077 4.077 5 C -0.119 4.119 6 C 0.093 3.907 7 C 0.561 3.439 8 O -0.536 6.536 9 N -0.581 5.581 10 C 0.083 3.917 11 C -0.122 4.122 12 C -0.112 4.112 13 H 0.076 0.924 14 C -0.139 4.139 15 C 0.178 3.822 16 N -0.592 5.592 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.920 5.920 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.158 3.842 26 H 0.023 0.977 27 C 0.112 3.888 28 N -0.448 5.448 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.060 0.940 36 H 0.134 0.866 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.092 0.908 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.907 22.062 1.942 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.021 4.021 3 C -0.175 4.175 4 C -0.103 4.103 5 C -0.140 4.140 6 C -0.044 4.044 7 C 0.347 3.653 8 O -0.413 6.413 9 N -0.313 5.313 10 C -0.039 4.039 11 C -0.161 4.161 12 C -0.132 4.132 13 H 0.094 0.906 14 C -0.177 4.177 15 C 0.054 3.946 16 N -0.317 5.317 17 C -0.356 4.356 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.567 5.567 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.049 3.951 26 H 0.041 0.959 27 C -0.010 4.010 28 N -0.161 5.161 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.111 0.889 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.569 20.978 2.038 24.043 hybrid contribution 1.281 0.252 0.349 1.351 sum -10.288 21.230 2.387 23.712 Atomic orbital electron populations 1.20749 0.88232 1.03799 1.03421 1.21536 0.97386 0.88297 0.94886 1.22153 0.95008 0.99351 1.00953 1.21630 0.94438 0.98280 0.95932 1.22123 1.02429 0.91693 0.97763 1.21304 0.89523 0.94517 0.99099 1.17934 0.86190 0.83134 0.78051 1.90789 1.13437 1.86280 1.50773 1.48143 1.11664 1.05691 1.65759 1.22812 0.80003 1.04052 0.97066 1.21873 1.00656 0.95461 0.98070 1.22274 0.97642 0.93910 0.99363 0.90608 1.22733 0.99859 0.97870 0.97226 1.21516 0.86496 0.91510 0.95053 1.44165 1.26028 1.02327 1.59188 1.19049 0.99981 0.96857 1.19755 0.90317 1.24811 0.98751 0.96811 0.99810 1.69955 1.37710 1.07564 1.41506 0.86150 0.83415 0.78572 0.78002 1.21687 1.21677 1.20489 1.20844 0.91843 0.87918 0.94519 0.95929 1.21727 0.99132 0.80805 0.99316 1.67671 1.08534 1.28054 1.11864 0.90131 0.90574 0.90046 0.84420 0.84075 0.83377 0.92175 0.84917 0.91123 0.91929 0.92324 0.92585 0.93603 0.93782 0.93805 0.88938 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.17 36.00 0.37 -0.24 16 2 C 0.12 1.06 6.78 -82.60 -0.56 0.50 16 3 C -0.15 -1.14 9.75 -39.32 -0.38 -1.52 16 4 C -0.08 -0.62 10.17 -39.31 -0.40 -1.02 16 5 C -0.12 -1.36 9.63 -39.05 -0.38 -1.74 16 6 C 0.09 1.28 6.53 -83.01 -0.54 0.74 16 7 C 0.56 9.80 7.63 -12.18 -0.09 9.70 16 8 O -0.54 -10.95 15.74 5.35 0.08 -10.86 16 9 N -0.58 -10.07 3.02 -173.99 -0.52 -10.59 16 10 C 0.08 1.18 5.61 -3.53 -0.02 1.16 16 11 C -0.12 -1.76 5.72 -26.79 -0.15 -1.92 16 12 C -0.11 -2.02 2.61 -89.52 -0.23 -2.26 16 13 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 14 C -0.14 -2.63 6.54 -25.15 -0.16 -2.80 16 15 C 0.18 4.40 5.43 -1.91 -0.01 4.39 16 16 N -0.59 -15.42 3.35 -163.16 -0.55 -15.97 16 17 C -0.23 -6.49 9.89 -15.06 -0.15 -6.64 16 18 H 0.08 2.19 7.36 -52.48 -0.39 1.80 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 20 N -0.92 -27.45 10.49 55.49 0.58 -26.86 16 21 Si 0.91 22.72 29.56 -169.99 -5.02 17.69 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.16 3.42 2.74 -68.05 -0.19 3.23 16 26 H 0.02 0.54 7.93 -51.93 -0.41 0.13 16 27 C 0.11 2.27 5.63 -4.17 -0.02 2.25 16 28 N -0.45 -5.37 6.02 -6.06 -0.04 -5.40 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.15 1.67 7.67 -52.48 -0.40 1.27 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.13 1.74 4.20 -80.18 -0.34 1.41 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 41 H 0.05 1.23 7.55 -51.93 -0.39 0.84 16 42 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.09 2.07 6.76 -51.93 -0.35 1.72 16 45 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -33.39 354.41 -10.01 -43.40 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.87 Total: -0.35 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -3.02 Total: 3.61 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.53 Total: -58.83 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.39 -10.01 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041935730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.641 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds