Wall clock time and date at job start Fri Apr 10 2020 23:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38603 * 119.54767 * 2 1 4 4 C 1.38584 * 119.35166 * 180.27640 * 3 2 1 5 5 C 1.38630 * 118.48651 * 359.48666 * 4 3 2 6 6 C 1.39267 * 119.06142 * 0.53400 * 5 4 3 7 7 C 1.48166 * 119.72703 * 179.72858 * 6 5 4 8 8 O 1.21520 * 119.99667 * 339.14296 * 7 6 5 9 9 N 1.34776 * 120.00806 * 159.13920 * 7 6 5 10 10 C 1.46602 * 119.75022 * 1.40646 * 9 7 6 11 11 C 1.53496 * 110.93052 * 227.68259 * 10 9 7 12 12 C 1.51974 * 107.37215 * 308.44116 * 11 10 9 13 13 H 1.08997 * 111.57722 * 303.00067 * 12 11 10 14 14 C 1.53703 * 114.99833 * 175.28827 * 12 11 10 15 15 C 1.55298 * 101.81548 * 206.55574 * 14 12 11 16 16 N 1.48153 * 107.04703 * 22.44090 * 15 14 12 17 17 C 1.36936 * 126.40244 * 185.02093 * 16 15 14 18 18 H 1.08001 * 119.99923 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99750 * 359.97438 * 17 16 15 20 20 N 1.31615 * 119.99959 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00130 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46836 * 60.00165 * 21 19 17 23 23 H 1.48493 * 109.47310 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47042 * 300.00437 * 21 19 17 25 25 C 1.45506 * 107.20102 * 5.00885 * 16 15 14 26 26 H 1.08991 * 109.57077 * 85.83886 * 25 16 15 27 27 C 1.47798 * 119.76074 * 181.68058 * 9 7 6 28 28 N 1.31491 * 119.55088 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47089 * 89.99804 * 1 2 3 30 30 H 1.09008 * 109.46696 * 210.00118 * 1 2 3 31 31 H 1.09000 * 109.47003 * 329.99528 * 1 2 3 32 32 H 1.08005 * 120.32626 * 0.02562 * 3 2 1 33 33 H 1.07993 * 120.75829 * 179.73045 * 4 3 2 34 34 H 1.08001 * 120.47358 * 180.28915 * 5 4 3 35 35 H 1.08997 * 109.22739 * 348.08326 * 10 9 7 36 36 H 1.09000 * 109.22968 * 107.44647 * 10 9 7 37 37 H 1.09000 * 109.96627 * 188.90606 * 11 10 9 38 38 H 1.09001 * 109.80180 * 67.89063 * 11 10 9 39 39 H 1.08998 * 110.96067 * 88.42324 * 14 12 11 40 40 H 1.09001 * 110.99119 * 324.70098 * 14 12 11 41 41 H 1.09003 * 109.92069 * 263.09511 * 15 14 12 42 42 H 1.08999 * 110.08869 * 141.88693 * 15 14 12 43 43 H 0.97006 * 120.00071 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.06133 * 247.93494 * 27 9 7 45 45 H 1.08998 * 110.06475 * 9.50125 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5764 1.2010 -0.0058 5 6 4.2334 -0.0196 -0.0006 6 6 3.4822 -1.1923 -0.0010 7 6 4.1692 -2.5050 -0.0015 8 8 5.3223 -2.5871 -0.3763 9 7 3.5155 -3.6081 0.4136 10 6 2.1151 -3.5083 0.8354 11 6 1.8922 -4.2295 2.1719 12 6 2.4619 -5.6314 2.0316 13 1 2.0069 -6.1675 1.1988 14 6 2.4329 -6.4758 3.3156 15 6 3.6171 -7.4526 3.0806 16 7 4.5186 -6.8129 2.0942 17 6 5.6351 -7.3716 1.5317 18 1 6.2200 -6.8089 0.8191 19 6 6.0152 -8.6611 1.8773 20 7 5.3021 -9.3469 2.7453 21 14 7.5378 -9.4236 1.1095 22 1 8.7263 -8.5979 1.4424 23 1 7.7247 -10.7977 1.6404 24 1 7.3725 -9.4814 -0.3651 25 6 3.9958 -5.4800 1.8345 26 1 4.3802 -4.7852 2.5811 27 6 4.2176 -4.9083 0.4461 28 7 2.1555 -1.1439 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6485 2.1399 0.0004 33 1 4.1318 2.1272 -0.0103 34 1 5.3126 -0.0608 -0.0002 35 1 1.8477 -2.4575 0.9465 36 1 1.4782 -3.9617 0.0759 37 1 0.8261 -4.2828 2.3928 38 1 2.4097 -3.6968 2.9698 39 1 1.4917 -7.0183 3.4042 40 1 2.6075 -5.8557 4.1948 41 1 3.2458 -8.3982 2.6856 42 1 4.1514 -7.6248 4.0149 43 1 5.5675 -10.2482 2.9866 44 1 3.7993 -5.5780 -0.3054 45 1 5.2829 -4.7626 0.2674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041935731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:30 Heat of formation + Delta-G solvation = 49.721500 kcal Electronic energy + Delta-G solvation = -26885.341599 eV Core-core repulsion = 23290.182195 eV Total energy + Delta-G solvation = -3595.159404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04822 -39.51800 -38.05483 -35.39008 -33.30257 -33.02750 -32.64742 -31.13609 -29.36103 -28.38894 -27.98598 -25.26931 -24.52032 -23.17884 -22.55592 -21.97238 -20.21669 -19.87818 -19.17793 -17.41359 -16.80471 -16.53290 -16.14813 -15.70220 -15.28415 -14.68770 -14.55093 -14.51772 -14.12609 -13.89255 -13.62546 -13.58463 -13.10788 -12.88171 -12.77630 -12.59091 -12.39111 -12.24597 -12.01852 -11.81308 -11.45621 -11.28476 -10.90382 -10.73373 -10.68622 -10.23395 -10.15173 -10.11947 -9.92389 -9.82629 -9.60309 -9.43107 -9.23741 -8.95565 -8.57894 -8.31346 -6.80827 -5.67345 -3.00921 0.48636 0.90514 2.73768 3.08210 3.45987 3.49695 3.51514 3.58542 3.88233 4.35665 4.49294 4.55792 4.68873 4.79742 5.01868 5.12432 5.20392 5.24203 5.27607 5.30805 5.32084 5.51515 5.68583 5.70312 5.75716 5.80437 5.82735 5.86680 5.96052 6.04380 6.15581 6.21755 6.23023 6.31212 6.42717 6.43612 6.61569 6.64222 6.79482 6.86279 7.13407 7.45519 7.60092 7.63006 7.68525 7.85642 8.26960 8.30955 9.23700 9.86648 10.53885 11.44963 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.003597 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.667112 B = 7781.577017 C = 8816.903669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.118 3.882 3 C -0.155 4.155 4 C -0.076 4.076 5 C -0.120 4.120 6 C 0.094 3.906 7 C 0.562 3.438 8 O -0.537 6.537 9 N -0.580 5.580 10 C 0.078 3.922 11 C -0.121 4.121 12 C -0.113 4.113 13 H 0.076 0.924 14 C -0.138 4.138 15 C 0.177 3.823 16 N -0.592 5.592 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.157 3.843 26 H 0.023 0.977 27 C 0.114 3.886 28 N -0.448 5.448 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.037 0.963 43 H 0.252 0.748 44 H 0.073 0.927 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.236 21.377 -3.391 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.021 4.021 3 C -0.175 4.175 4 C -0.102 4.102 5 C -0.141 4.141 6 C -0.043 4.043 7 C 0.347 3.653 8 O -0.414 6.414 9 N -0.311 5.311 10 C -0.044 4.044 11 C -0.159 4.159 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.177 4.177 15 C 0.053 3.947 16 N -0.317 5.317 17 C -0.356 4.356 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.741 3.259 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.048 3.952 26 H 0.040 0.960 27 C -0.008 4.008 28 N -0.161 5.161 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.929 20.267 -3.574 23.787 hybrid contribution 1.267 0.214 -0.305 1.320 sum -10.662 20.481 -3.879 23.414 Atomic orbital electron populations 1.20751 0.88221 1.03819 1.03402 1.21515 0.97365 0.88269 0.94963 1.22143 0.94994 0.99338 1.01020 1.21620 0.94442 0.98265 0.95894 1.22100 1.02330 0.91696 0.97959 1.21285 0.89524 0.94516 0.98971 1.17935 0.85554 0.83013 0.78777 1.90792 1.16641 1.85379 1.48574 1.48170 1.13064 1.07857 1.62052 1.22766 0.80590 1.05461 0.95600 1.21778 1.00758 0.96160 0.97246 1.22298 0.97687 0.94413 0.98928 0.90537 1.22727 0.99951 0.98734 0.96240 1.21539 0.87224 0.93215 0.92697 1.44172 1.28066 1.10515 1.48957 1.19013 1.00248 0.96770 1.19599 0.90316 1.24777 0.99161 0.96905 0.99425 1.69938 1.39723 1.11354 1.35959 0.86216 0.82701 0.78289 0.78712 1.21124 1.21649 1.21104 1.20967 0.91770 0.89183 0.93283 0.96013 1.21806 0.98387 0.81614 0.98999 1.67567 1.08505 1.28216 1.11861 0.90136 0.90053 0.90554 0.84401 0.84061 0.83476 0.84831 0.92069 0.91095 0.91980 0.92285 0.92662 0.92675 0.94458 0.93749 0.90903 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.17 36.01 0.37 -0.25 16 2 C 0.12 1.07 6.78 -82.60 -0.56 0.51 16 3 C -0.15 -1.15 9.75 -39.32 -0.38 -1.53 16 4 C -0.08 -0.62 10.17 -39.31 -0.40 -1.02 16 5 C -0.12 -1.37 9.63 -39.05 -0.38 -1.75 16 6 C 0.09 1.31 6.45 -83.01 -0.54 0.78 16 7 C 0.56 9.82 7.60 -12.18 -0.09 9.73 16 8 O -0.54 -10.98 15.89 5.35 0.08 -10.89 16 9 N -0.58 -10.06 3.01 -173.97 -0.52 -10.58 16 10 C 0.08 1.12 5.77 -3.73 -0.02 1.10 16 11 C -0.12 -1.74 5.70 -27.00 -0.15 -1.90 16 12 C -0.11 -2.05 2.62 -89.51 -0.23 -2.28 16 13 H 0.08 1.43 8.13 -51.93 -0.42 1.00 16 14 C -0.14 -2.62 6.54 -25.15 -0.16 -2.79 16 15 C 0.18 4.37 5.45 -1.91 -0.01 4.36 16 16 N -0.59 -15.38 3.35 -162.91 -0.55 -15.93 16 17 C -0.23 -6.47 9.88 -15.06 -0.15 -6.62 16 18 H 0.08 2.18 7.41 -52.49 -0.39 1.79 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -27.44 10.43 55.49 0.58 -26.86 16 21 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 25 C 0.16 3.39 2.77 -67.82 -0.19 3.20 16 26 H 0.02 0.51 7.90 -51.93 -0.41 0.10 16 27 C 0.11 2.31 5.68 -3.95 -0.02 2.29 16 28 N -0.45 -5.41 6.18 -6.06 -0.04 -5.44 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 33 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.15 1.66 7.79 -52.49 -0.41 1.25 16 35 H 0.14 1.75 3.98 -82.85 -0.33 1.42 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.93 7.97 -51.93 -0.41 0.51 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 41 H 0.06 1.49 7.21 -51.93 -0.37 1.12 16 42 H 0.04 1.01 7.76 -51.93 -0.40 0.60 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.09 2.05 6.77 -51.93 -0.35 1.70 16 LS Contribution 354.57 15.07 5.34 5.34 Total: -1.00 -33.28 354.57 -10.01 -43.29 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.86 Total: -0.15 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -3.02 Total: 3.54 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.53 Total: -58.81 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.28 -10.01 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041935731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.011 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds