Wall clock time and date at job start Fri Apr 10 2020 23:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38356 * 119.46187 * 2 1 4 4 C 1.38352 * 119.30578 * 180.02562 * 3 2 1 5 5 C 1.40031 * 118.28873 * 359.97438 * 4 3 2 6 6 C 1.47840 * 120.56029 * 179.97438 * 5 4 3 7 7 O 1.21556 * 119.99737 * 228.44634 * 6 5 4 8 8 N 1.34776 * 119.99863 * 48.44678 * 6 5 4 9 9 C 1.47139 * 121.20417 * 176.65902 * 8 6 5 10 10 C 1.52841 * 107.94150 * 237.33107 * 9 8 6 11 11 C 1.53091 * 110.57159 * 302.62993 * 10 9 8 12 12 H 1.08999 * 113.05722 * 289.00236 * 11 10 9 13 13 C 1.56034 * 106.39391 * 164.57931 * 11 10 9 14 14 C 1.54494 * 102.61437 * 281.61579 * 13 11 10 15 15 N 1.47441 * 107.14933 * 337.15483 * 14 13 11 16 16 C 1.36932 * 126.06316 * 178.39216 * 15 14 13 17 17 H 1.07998 * 120.00773 * 179.97438 * 16 15 14 18 18 C 1.38820 * 119.99732 * 359.97438 * 16 15 14 19 19 N 1.31617 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99807 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47037 * 60.00346 * 20 18 16 22 22 H 1.48500 * 109.46902 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47292 * 300.00294 * 20 18 16 24 24 C 1.46468 * 107.87738 * 358.37842 * 15 14 13 25 25 H 1.09004 * 108.41801 * 270.75742 * 24 15 14 26 26 C 1.46757 * 121.21278 * 356.63411 * 8 6 5 27 27 C 1.39523 * 118.88014 * 0.25935 * 5 4 3 28 28 N 1.31698 * 120.56297 * 359.49561 * 27 5 4 29 29 H 1.08998 * 109.47370 * 90.00074 * 1 2 3 30 30 H 1.09001 * 109.47362 * 210.00440 * 1 2 3 31 31 H 1.09004 * 109.47486 * 330.00280 * 1 2 3 32 32 H 1.08002 * 120.34863 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.85783 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.79409 * 117.71732 * 9 8 6 35 35 H 1.08999 * 109.76187 * 356.93392 * 9 8 6 36 36 H 1.08997 * 109.25741 * 182.34271 * 10 9 8 37 37 H 1.09002 * 109.25093 * 62.91182 * 10 9 8 38 38 H 1.08997 * 110.77613 * 163.33149 * 13 11 10 39 39 H 1.09000 * 110.93912 * 39.97300 * 13 11 10 40 40 H 1.08999 * 109.90468 * 217.77790 * 14 13 11 41 41 H 1.09003 * 109.90788 * 96.53556 * 14 13 11 42 42 H 0.96996 * 119.99688 * 179.97438 * 19 18 16 43 43 H 1.08991 * 109.22988 * 7.13398 * 26 8 6 44 44 H 1.09004 * 109.22374 * 247.72793 * 26 8 6 45 45 H 1.07991 * 119.71676 * 179.74692 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5709 1.2009 -0.0005 5 6 4.2312 -0.0340 -0.0005 6 6 5.7083 -0.0966 -0.0016 7 8 6.2853 -0.8204 -0.7896 8 7 6.4150 0.6488 0.8709 9 6 7.8815 0.5529 0.9425 10 6 8.2593 0.1737 2.3741 11 6 7.7066 1.2003 3.3662 12 1 8.2210 2.1601 3.3184 13 6 7.7887 0.5382 4.7766 14 6 6.5690 -0.4100 4.7758 15 7 5.6152 0.1094 3.7786 16 6 4.4139 -0.4549 3.4418 17 1 3.7890 0.0110 2.6943 18 6 3.9993 -1.6260 4.0612 19 7 4.7610 -2.1942 4.9718 20 14 2.3602 -2.3955 3.6022 21 1 2.3602 -2.7349 2.1564 22 1 2.1525 -3.6306 4.4000 23 1 1.2651 -1.4331 3.8846 24 6 6.1804 1.3363 3.2124 25 1 5.8566 2.1787 3.8237 26 6 5.7499 1.5858 1.7839 27 6 3.4716 -1.2043 -0.0055 28 7 2.1558 -1.1486 -0.0001 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6443 2.1382 0.0004 33 1 4.1274 2.1265 -0.0001 34 1 8.3272 1.5141 0.6861 35 1 8.2349 -0.2135 0.2527 36 1 9.3452 0.1375 2.4617 37 1 7.8476 -0.8085 2.6062 38 1 7.6950 1.2882 5.5619 39 1 8.7156 -0.0241 4.8896 40 1 6.1057 -0.4196 5.7624 41 1 6.8820 -1.4172 4.5004 42 1 4.4711 -3.0123 5.4048 43 1 4.6704 1.4571 1.7065 44 1 6.0108 2.6063 1.5034 45 1 3.9668 -2.1640 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041942779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:33 Heat of formation + Delta-G solvation = 38.146486 kcal Electronic energy + Delta-G solvation = -28430.795010 eV Core-core repulsion = 24835.133676 eV Total energy + Delta-G solvation = -3595.661335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.60367 -39.36194 -37.97700 -34.90428 -33.51721 -32.54730 -32.14041 -31.13700 -29.16029 -28.56305 -27.68448 -24.77192 -24.09223 -23.61470 -22.58641 -21.99533 -20.10104 -19.93898 -18.50666 -17.16924 -16.69569 -16.16487 -15.96199 -15.54021 -15.06319 -14.62932 -14.38106 -14.22612 -13.97890 -13.93210 -13.51008 -13.18664 -12.87060 -12.73084 -12.64614 -12.28122 -12.13408 -11.98931 -11.82496 -11.60506 -11.49449 -11.23366 -10.90543 -10.81870 -10.65411 -10.26731 -10.01128 -9.84762 -9.74529 -9.67620 -9.57063 -9.39485 -9.08514 -8.64122 -8.56614 -8.19560 -6.82382 -5.70538 -3.03398 1.09898 1.48023 3.01481 3.40405 3.44996 3.49857 3.59162 4.06793 4.47751 4.52730 4.79125 4.85982 4.99026 5.06463 5.21068 5.27601 5.33330 5.47628 5.51045 5.58088 5.62195 5.65404 5.70288 5.74090 5.76685 5.90592 5.92259 5.95434 6.06906 6.11486 6.19125 6.20508 6.26062 6.32918 6.34512 6.52619 6.62413 6.63432 6.85775 6.95152 6.99057 7.53177 7.60728 7.77381 7.81287 8.23156 8.24301 8.51092 9.20407 9.83317 10.49356 11.41012 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.007606 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.784480 B = 3680.215158 C = 5056.841372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.138 3.862 3 C -0.180 4.180 4 C -0.047 4.047 5 C -0.164 4.164 6 C 0.579 3.421 7 O -0.550 6.550 8 N -0.584 5.584 9 C 0.117 3.883 10 C -0.122 4.122 11 C -0.102 4.102 12 H 0.075 0.925 13 C -0.144 4.144 14 C 0.179 3.821 15 N -0.588 5.588 16 C -0.221 4.221 17 H 0.072 0.928 18 C 0.000 4.000 19 N -0.919 5.919 20 Si 0.885 3.115 21 H -0.258 1.258 22 H -0.294 1.294 23 H -0.289 1.289 24 C 0.154 3.846 25 H 0.026 0.974 26 C 0.097 3.903 27 C 0.173 3.827 28 N -0.480 5.480 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.251 0.749 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 10.197 -7.329 12.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.000 4.000 3 C -0.199 4.199 4 C -0.074 4.074 5 C -0.169 4.169 6 C 0.367 3.633 7 O -0.429 6.429 8 N -0.315 5.315 9 C -0.006 4.006 10 C -0.160 4.160 11 C -0.122 4.122 12 H 0.094 0.906 13 C -0.182 4.182 14 C 0.054 3.946 15 N -0.313 5.313 16 C -0.349 4.349 17 H 0.090 0.910 18 C -0.197 4.197 19 N -0.566 5.566 20 Si 0.714 3.286 21 H -0.183 1.183 22 H -0.220 1.220 23 H -0.216 1.216 24 C 0.045 3.955 25 H 0.044 0.956 26 C -0.026 4.026 27 C 0.015 3.985 28 N -0.189 5.189 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.152 8.823 -7.663 11.687 hybrid contribution -0.346 0.353 0.245 0.552 sum -0.194 9.175 -7.418 11.800 Atomic orbital electron populations 1.20735 0.89060 1.03649 1.02783 1.21417 0.97069 0.88519 0.93018 1.21766 0.94378 0.99238 1.04567 1.21642 0.94536 0.97105 0.94070 1.20748 0.94518 0.95482 1.06189 1.17954 0.86285 0.79021 0.80084 1.90731 1.71413 1.40513 1.40252 1.47727 1.07019 1.41049 1.35743 1.21537 0.79504 1.01467 0.98059 1.21822 0.99547 1.01086 0.93513 1.22392 0.96588 0.97336 0.95860 0.90642 1.23159 1.00168 0.99458 0.95416 1.21211 0.86061 0.94182 0.93111 1.44237 1.18898 1.24529 1.43683 1.18740 0.93169 1.04677 1.18289 0.91000 1.24682 0.98314 0.97879 0.98809 1.69938 1.36967 1.20735 1.28977 0.86593 0.83594 0.78731 0.79695 1.18308 1.22035 1.21583 1.20679 0.91646 0.91738 0.91452 0.95638 1.21885 0.99374 0.90764 0.90615 1.22673 0.88503 0.97555 0.89742 1.67594 1.09586 1.28799 1.12929 0.90441 0.90426 0.90669 0.84622 0.84587 0.91941 0.89480 0.91982 0.90084 0.92792 0.92261 0.94121 0.93642 0.93851 0.88749 0.92254 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.16 36.00 0.37 -0.89 16 2 C 0.14 2.16 6.78 -82.51 -0.56 1.60 16 3 C -0.18 -2.48 9.72 -39.50 -0.38 -2.86 16 4 C -0.05 -0.71 7.51 -38.87 -0.29 -1.00 16 5 C -0.16 -3.00 4.36 -104.82 -0.46 -3.46 16 6 C 0.58 11.25 7.30 -12.33 -0.09 11.16 16 7 O -0.55 -12.00 16.51 5.32 0.09 -11.91 16 8 N -0.58 -10.22 2.97 -175.22 -0.52 -10.74 16 9 C 0.12 1.81 6.44 -3.78 -0.02 1.79 16 10 C -0.12 -1.96 5.04 -26.77 -0.14 -2.10 16 11 C -0.10 -1.64 3.68 -88.43 -0.33 -1.97 16 12 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 13 C -0.14 -2.55 6.32 -24.32 -0.15 -2.70 16 14 C 0.18 4.16 4.61 -2.74 -0.01 4.15 16 15 N -0.59 -13.79 3.20 -164.42 -0.53 -14.32 16 16 C -0.22 -5.73 9.70 -15.06 -0.15 -5.87 16 17 H 0.07 1.83 5.77 -52.49 -0.30 1.53 16 18 C 0.00 0.00 5.49 -17.43 -0.10 -0.10 16 19 N -0.92 -26.71 10.38 55.49 0.58 -26.14 16 20 Si 0.88 22.20 29.55 -169.99 -5.02 17.17 16 21 H -0.26 -6.32 6.71 56.52 0.38 -5.94 16 22 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 C 0.15 2.86 2.97 -68.30 -0.20 2.66 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 C 0.10 1.60 4.59 -4.78 -0.02 1.58 16 27 C 0.17 3.40 10.77 -17.13 -0.18 3.21 16 28 N -0.48 -9.04 9.98 -9.14 -0.09 -9.13 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.73 8.07 -51.93 -0.42 0.32 16 32 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.14 1.67 6.97 -52.49 -0.37 1.31 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.44 7.06 -51.93 -0.37 1.07 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.65 6.85 -51.93 -0.36 1.29 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.97 7.98 -51.93 -0.41 0.55 16 40 H 0.04 1.06 7.57 -51.93 -0.39 0.67 16 41 H 0.05 1.20 7.04 -51.93 -0.37 0.83 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 43 H 0.09 1.65 3.04 -51.93 -0.16 1.50 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.16 3.18 8.06 -52.49 -0.42 2.76 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -32.20 348.88 -9.48 -41.68 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.53 Total: 2.92 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.72 Total: 5.20 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.56 Total: -60.33 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.20 -9.48 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041942779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.831 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds