Wall clock time and date at job start Fri Apr 10 2020 23:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38349 * 119.46032 * 2 1 4 4 C 1.38360 * 119.30294 * 179.97438 * 3 2 1 5 5 C 1.40027 * 118.28904 * 0.02562 * 4 3 2 6 6 C 1.47833 * 120.56004 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00072 * 310.66650 * 6 5 4 8 8 N 1.34779 * 120.00185 * 130.67199 * 6 5 4 9 9 C 1.46591 * 119.75562 * 3.47908 * 8 6 5 10 10 C 1.53497 * 110.93643 * 227.68954 * 9 8 6 11 11 C 1.51984 * 107.36734 * 308.44055 * 10 9 8 12 12 H 1.08999 * 111.57407 * 303.00187 * 11 10 9 13 13 C 1.53706 * 114.99909 * 175.28498 * 11 10 9 14 14 C 1.55299 * 101.81588 * 206.55341 * 13 11 10 15 15 N 1.48150 * 107.04620 * 22.44714 * 14 13 11 16 16 C 1.36933 * 126.40206 * 184.98219 * 15 14 13 17 17 H 1.07998 * 120.00241 * 180.02562 * 16 15 14 18 18 C 1.38811 * 119.99868 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00059 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00091 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47248 * 90.00182 * 20 18 16 22 22 H 1.48507 * 109.47196 * 209.99830 * 20 18 16 23 23 H 1.48500 * 109.47208 * 329.99981 * 20 18 16 24 24 C 1.45509 * 107.20257 * 4.99593 * 15 14 13 25 25 H 1.09008 * 109.56406 * 85.84522 * 24 15 14 26 26 C 1.47798 * 119.75575 * 183.76022 * 8 6 5 27 27 C 1.39526 * 118.88149 * 359.97438 * 5 4 3 28 28 N 1.31695 * 120.56346 * 0.25814 * 27 5 4 29 29 H 1.09000 * 109.47197 * 89.99792 * 1 2 3 30 30 H 1.09007 * 109.47196 * 210.00167 * 1 2 3 31 31 H 1.09003 * 109.47106 * 329.99751 * 1 2 3 32 32 H 1.07999 * 120.34950 * 359.95383 * 3 2 1 33 33 H 1.08004 * 120.85869 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.22640 * 348.08745 * 9 8 6 35 35 H 1.08995 * 109.23016 * 107.45056 * 9 8 6 36 36 H 1.08996 * 109.97060 * 188.91019 * 10 9 8 37 37 H 1.09002 * 109.80629 * 67.88275 * 10 9 8 38 38 H 1.08999 * 110.95603 * 88.42299 * 13 11 10 39 39 H 1.08998 * 110.95831 * 324.68518 * 13 11 10 40 40 H 1.08997 * 109.91713 * 263.09696 * 14 13 11 41 41 H 1.08998 * 109.91762 * 141.79309 * 14 13 11 42 42 H 0.96999 * 120.00647 * 180.02562 * 19 18 16 43 43 H 1.09003 * 110.06662 * 247.93116 * 26 8 6 44 44 H 1.08999 * 110.07225 * 9.49326 * 26 8 6 45 45 H 1.07998 * 119.71516 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2312 -0.0341 0.0005 6 6 5.7082 -0.0967 0.0005 7 8 6.3445 0.5629 -0.7979 8 7 6.3493 -0.8853 0.8858 9 6 5.5763 -1.7365 1.7950 10 6 6.0842 -1.6017 3.2373 11 6 7.5875 -1.8233 3.2114 12 1 7.8427 -2.7906 2.7784 13 6 8.2981 -1.6148 4.5583 14 6 9.7301 -1.2207 4.1046 15 7 9.6200 -0.7013 2.7216 16 6 10.6571 -0.3313 1.9075 17 1 10.4575 0.0360 0.9117 18 6 11.9650 -0.4285 2.3621 19 7 12.2084 -0.8767 3.5755 20 14 13.3797 0.0769 1.2520 21 1 13.6787 1.5172 1.4556 22 1 14.5818 -0.7298 1.5835 23 1 13.0036 -0.1550 -0.1658 24 6 8.2040 -0.6574 2.3898 25 1 7.7766 0.2831 2.7375 26 6 7.8264 -0.8808 0.9368 27 6 3.4716 -1.2044 0.0005 28 7 2.1558 -1.1487 -0.0046 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6443 2.1381 -0.0008 33 1 4.1275 2.1264 0.0010 34 1 4.5271 -1.4435 1.7560 35 1 5.6700 -2.7758 1.4805 36 1 5.6097 -2.3512 3.8706 37 1 5.8629 -0.6034 3.6150 38 1 8.3130 -2.5377 5.1382 39 1 7.8324 -0.8079 5.1240 40 1 10.3793 -2.0961 4.1220 41 1 10.1279 -0.4469 4.7613 42 1 13.1223 -0.9442 3.8934 43 1 8.2154 -1.8391 0.5925 44 1 8.2196 -0.0729 0.3198 45 1 3.9669 -2.1641 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041942782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:40 Heat of formation + Delta-G solvation = 36.062813 kcal Electronic energy + Delta-G solvation = -26671.442379 eV Core-core repulsion = 23075.690689 eV Total energy + Delta-G solvation = -3595.751690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02518 -39.67316 -38.16042 -35.49731 -33.41250 -32.91374 -32.63252 -31.28498 -29.76324 -28.66814 -27.80028 -24.91950 -24.27337 -23.77662 -22.49310 -22.23990 -20.28430 -19.92846 -19.25608 -17.56714 -16.92173 -16.54111 -16.20289 -15.92960 -15.10953 -14.66926 -14.65338 -14.58897 -14.30023 -13.98941 -13.68636 -13.39720 -13.26275 -13.00024 -12.88510 -12.62950 -12.55280 -12.31289 -12.23912 -11.89233 -11.54719 -11.31301 -10.95846 -10.82564 -10.76314 -10.28255 -10.13991 -10.13226 -9.99527 -9.89326 -9.68045 -9.55510 -9.51841 -9.10199 -8.63772 -8.49920 -6.87033 -5.72746 -3.06733 0.53738 0.95465 2.66475 2.99759 3.41552 3.47203 3.48527 3.49029 3.92362 4.36771 4.41795 4.50126 4.57746 4.73477 4.85993 4.94151 5.05888 5.10100 5.20586 5.24176 5.34051 5.37499 5.46162 5.59603 5.62883 5.66088 5.74964 5.76488 5.82047 5.90121 5.99745 6.05328 6.10163 6.14956 6.30546 6.34230 6.44952 6.54134 6.66963 6.72186 7.02565 7.45386 7.54116 7.59778 7.61019 7.80299 8.17506 8.22638 9.18083 9.80983 10.47418 11.39552 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.003338 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.108687 B = 8386.999734 C = 9228.861398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.138 3.862 3 C -0.175 4.175 4 C -0.024 4.024 5 C -0.178 4.178 6 C 0.559 3.441 7 O -0.532 6.532 8 N -0.596 5.596 9 C 0.100 3.900 10 C -0.119 4.119 11 C -0.114 4.114 12 H 0.078 0.922 13 C -0.138 4.138 14 C 0.177 3.823 15 N -0.591 5.591 16 C -0.229 4.229 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.156 3.844 25 H 0.023 0.977 26 C 0.117 3.883 27 C 0.135 3.865 28 N -0.486 5.486 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.252 0.748 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.595 -0.832 -2.380 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.001 3.999 3 C -0.195 4.195 4 C -0.050 4.050 5 C -0.183 4.183 6 C 0.345 3.655 7 O -0.409 6.409 8 N -0.329 5.329 9 C -0.023 4.023 10 C -0.157 4.157 11 C -0.134 4.134 12 H 0.097 0.903 13 C -0.176 4.176 14 C 0.053 3.947 15 N -0.317 5.317 16 C -0.357 4.357 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.569 5.569 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.047 3.953 25 H 0.041 0.959 26 C -0.004 4.004 27 C -0.023 4.023 28 N -0.196 5.196 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.445 -1.252 -2.796 22.654 hybrid contribution 1.401 1.040 -0.435 1.798 sum -21.044 -0.212 -3.232 21.292 Atomic orbital electron populations 1.20763 0.88527 1.03719 1.03306 1.21493 0.97271 0.88339 0.92787 1.21924 0.94398 0.99562 1.03638 1.21642 0.94170 0.97538 0.91666 1.21006 0.94937 0.95706 1.06651 1.18136 0.86449 0.79642 0.81288 1.90808 1.67531 1.43880 1.38690 1.48225 1.07823 1.41881 1.34976 1.21937 0.95378 0.94529 0.90479 1.21725 0.96719 1.02347 0.94936 1.22292 0.92873 0.99976 0.98226 0.90335 1.22730 0.99126 1.00129 0.95632 1.21548 0.90092 0.98377 0.84670 1.44168 0.98874 1.75890 1.12723 1.19045 0.84595 1.36435 0.95641 0.90251 1.24782 0.97241 1.01363 0.96832 1.69940 1.18882 1.51690 1.16369 0.86143 0.82046 0.77969 0.79795 1.21587 1.21689 1.20547 1.20986 0.87285 0.95197 0.91826 0.95947 1.21782 0.75958 1.03271 0.99436 1.23029 0.89143 0.97629 0.92511 1.67560 1.09385 1.29107 1.13505 0.90137 0.90213 0.90490 0.84132 0.83955 0.90046 0.91246 0.90702 0.91467 0.92180 0.92587 0.92574 0.94423 0.93738 0.90798 0.88866 0.81967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.16 36.00 0.37 -0.27 16 2 C 0.14 1.29 6.78 -82.51 -0.56 0.74 16 3 C -0.18 -1.56 9.72 -39.50 -0.38 -1.94 16 4 C -0.02 -0.27 9.89 -38.87 -0.38 -0.65 16 5 C -0.18 -2.27 4.96 -104.82 -0.52 -2.79 16 6 C 0.56 8.95 7.26 -12.33 -0.09 8.86 16 7 O -0.53 -10.57 16.43 5.32 0.09 -10.48 16 8 N -0.60 -9.18 3.01 -174.11 -0.52 -9.71 16 9 C 0.10 1.19 5.03 -3.73 -0.02 1.17 16 10 C -0.12 -1.51 5.70 -26.99 -0.15 -1.67 16 11 C -0.11 -1.89 2.62 -89.51 -0.23 -2.13 16 12 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 13 C -0.14 -2.47 6.54 -25.15 -0.16 -2.63 16 14 C 0.18 4.21 5.45 -1.92 -0.01 4.20 16 15 N -0.59 -14.79 3.35 -162.91 -0.55 -15.33 16 16 C -0.23 -6.32 9.88 -15.06 -0.15 -6.47 16 17 H 0.08 2.15 7.41 -52.49 -0.39 1.76 16 18 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -26.89 10.44 55.49 0.58 -26.31 16 20 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.16 3.17 2.77 -67.82 -0.19 2.98 16 25 H 0.02 0.50 7.90 -51.92 -0.41 0.09 16 26 C 0.12 2.21 5.68 -3.95 -0.02 2.19 16 27 C 0.14 1.52 8.55 -17.13 -0.15 1.38 16 28 N -0.49 -5.42 10.25 -9.14 -0.09 -5.51 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.14 1.51 8.06 -52.48 -0.42 1.08 16 34 H 0.08 0.86 4.66 -51.93 -0.24 0.61 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.90 7.97 -51.93 -0.41 0.48 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.06 1.47 7.21 -51.93 -0.37 1.10 16 41 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.09 1.98 6.78 -51.93 -0.35 1.63 16 45 H 0.16 1.58 6.97 -52.49 -0.37 1.21 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -32.75 355.12 -9.66 -42.41 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.73 Total: -0.39 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.75 Total: 2.70 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.58 Total: -56.86 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.75 -9.66 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041942782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.469 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds