Wall clock time and date at job start Fri Apr 10 2020 23:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38349 * 119.46032 * 2 1 4 4 C 1.38360 * 119.30294 * 179.97438 * 3 2 1 5 5 C 1.40027 * 118.28904 * 0.02562 * 4 3 2 6 6 C 1.47833 * 120.56004 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00072 * 310.66650 * 6 5 4 8 8 N 1.34779 * 120.00185 * 130.67199 * 6 5 4 9 9 C 1.46591 * 119.75562 * 3.47908 * 8 6 5 10 10 C 1.53497 * 110.93643 * 227.68954 * 9 8 6 11 11 C 1.51984 * 107.36734 * 308.44055 * 10 9 8 12 12 H 1.08999 * 111.57407 * 303.00187 * 11 10 9 13 13 C 1.53706 * 114.99909 * 175.28498 * 11 10 9 14 14 C 1.55299 * 101.81588 * 206.55341 * 13 11 10 15 15 N 1.48150 * 107.04620 * 22.44714 * 14 13 11 16 16 C 1.36933 * 126.40206 * 184.98219 * 15 14 13 17 17 H 1.07998 * 120.00241 * 180.02562 * 16 15 14 18 18 C 1.38811 * 119.99868 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00059 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00091 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47248 * 90.00182 * 20 18 16 22 22 H 1.48507 * 109.47196 * 209.99830 * 20 18 16 23 23 H 1.48500 * 109.47208 * 329.99981 * 20 18 16 24 24 C 1.45509 * 107.20257 * 4.99593 * 15 14 13 25 25 H 1.09008 * 109.56406 * 85.84522 * 24 15 14 26 26 C 1.47798 * 119.75575 * 183.76022 * 8 6 5 27 27 C 1.39526 * 118.88149 * 359.97438 * 5 4 3 28 28 N 1.31695 * 120.56346 * 0.25814 * 27 5 4 29 29 H 1.09000 * 109.47197 * 89.99792 * 1 2 3 30 30 H 1.09007 * 109.47196 * 210.00167 * 1 2 3 31 31 H 1.09003 * 109.47106 * 329.99751 * 1 2 3 32 32 H 1.07999 * 120.34950 * 359.95383 * 3 2 1 33 33 H 1.08004 * 120.85869 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.22640 * 348.08745 * 9 8 6 35 35 H 1.08995 * 109.23016 * 107.45056 * 9 8 6 36 36 H 1.08996 * 109.97060 * 188.91019 * 10 9 8 37 37 H 1.09002 * 109.80629 * 67.88275 * 10 9 8 38 38 H 1.08999 * 110.95603 * 88.42299 * 13 11 10 39 39 H 1.08998 * 110.95831 * 324.68518 * 13 11 10 40 40 H 1.08997 * 109.91713 * 263.09696 * 14 13 11 41 41 H 1.08998 * 109.91762 * 141.79309 * 14 13 11 42 42 H 0.96999 * 120.00647 * 180.02562 * 19 18 16 43 43 H 1.09003 * 110.06662 * 247.93116 * 26 8 6 44 44 H 1.08999 * 110.07225 * 9.49326 * 26 8 6 45 45 H 1.07998 * 119.71516 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2312 -0.0341 0.0005 6 6 5.7082 -0.0967 0.0005 7 8 6.3445 0.5629 -0.7979 8 7 6.3493 -0.8853 0.8858 9 6 5.5763 -1.7365 1.7950 10 6 6.0842 -1.6017 3.2373 11 6 7.5875 -1.8233 3.2114 12 1 7.8427 -2.7906 2.7784 13 6 8.2981 -1.6148 4.5583 14 6 9.7301 -1.2207 4.1046 15 7 9.6200 -0.7013 2.7216 16 6 10.6571 -0.3313 1.9075 17 1 10.4575 0.0360 0.9117 18 6 11.9650 -0.4285 2.3621 19 7 12.2084 -0.8767 3.5755 20 14 13.3797 0.0769 1.2520 21 1 13.6787 1.5172 1.4556 22 1 14.5818 -0.7298 1.5835 23 1 13.0036 -0.1550 -0.1658 24 6 8.2040 -0.6574 2.3898 25 1 7.7766 0.2831 2.7375 26 6 7.8264 -0.8808 0.9368 27 6 3.4716 -1.2044 0.0005 28 7 2.1558 -1.1487 -0.0046 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6443 2.1381 -0.0008 33 1 4.1275 2.1264 0.0010 34 1 4.5271 -1.4435 1.7560 35 1 5.6700 -2.7758 1.4805 36 1 5.6097 -2.3512 3.8706 37 1 5.8629 -0.6034 3.6150 38 1 8.3130 -2.5377 5.1382 39 1 7.8324 -0.8079 5.1240 40 1 10.3793 -2.0961 4.1220 41 1 10.1279 -0.4469 4.7613 42 1 13.1223 -0.9442 3.8934 43 1 8.2154 -1.8391 0.5925 44 1 8.2196 -0.0729 0.3198 45 1 3.9669 -2.1641 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041942782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:40 Heat of formation + Delta-G solvation = 15.191569 kcal Electronic energy + Delta-G solvation = -26672.347424 eV Core-core repulsion = 23075.690689 eV Total energy + Delta-G solvation = -3596.656735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06457 -40.81937 -39.57681 -36.97940 -34.76324 -34.16017 -33.42385 -32.91274 -31.14191 -30.27269 -28.73481 -26.60944 -25.70008 -24.72577 -23.52916 -23.43520 -21.83159 -21.47885 -20.54003 -18.88122 -18.34042 -17.78292 -17.20071 -17.03853 -16.81377 -16.09474 -15.92565 -15.72864 -15.51960 -15.31332 -14.88154 -14.75108 -14.42546 -14.19532 -13.97421 -13.86995 -13.61381 -13.30540 -13.19529 -13.13713 -13.00995 -12.94544 -12.76124 -12.53347 -12.14439 -12.02074 -11.80080 -11.56815 -11.46691 -11.27044 -11.06913 -10.95847 -10.74885 -10.50163 -9.93902 -9.78062 -8.93230 -7.88348 -5.23410 -0.29940 0.16331 1.42586 1.43468 1.47090 1.52844 1.80509 2.47406 2.65844 3.15298 3.29940 3.39851 3.50388 3.69817 3.75536 3.79557 3.90646 3.94498 4.03133 4.23037 4.24848 4.27661 4.32918 4.49066 4.59023 4.63406 4.67903 4.72948 4.78659 4.84356 4.84941 4.88043 5.02290 5.07350 5.09843 5.12369 5.19680 5.20896 5.33146 5.46316 5.56098 5.61049 5.64891 5.76706 6.16987 6.24964 6.82639 6.94884 7.06144 7.74227 8.41076 9.22591 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.003338 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.108687 B = 8386.999734 C = 9228.861398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.138 3.862 3 C -0.166 4.166 4 C -0.035 4.035 5 C -0.197 4.197 6 C 0.558 3.442 7 O -0.583 6.583 8 N -0.594 5.594 9 C 0.096 3.904 10 C -0.109 4.109 11 C -0.097 4.097 12 H 0.080 0.920 13 C -0.122 4.122 14 C 0.180 3.820 15 N -0.613 5.613 16 C -0.238 4.238 17 H 0.075 0.925 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.971 3.029 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.272 1.272 24 C 0.148 3.852 25 H 0.007 0.993 26 C 0.130 3.870 27 C 0.139 3.861 28 N -0.499 5.499 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.174 0.826 33 H 0.139 0.861 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.024 0.976 41 H -0.001 1.001 42 H 0.248 0.752 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.407 -1.595 -2.291 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.001 3.999 3 C -0.185 4.185 4 C -0.061 4.061 5 C -0.202 4.202 6 C 0.346 3.654 7 O -0.464 6.464 8 N -0.325 5.325 9 C -0.025 4.025 10 C -0.147 4.147 11 C -0.116 4.116 12 H 0.098 0.902 13 C -0.160 4.160 14 C 0.056 3.944 15 N -0.338 5.338 16 C -0.367 4.367 17 H 0.093 0.907 18 C -0.254 4.254 19 N -0.597 5.597 20 Si 0.800 3.200 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.197 1.197 24 C 0.040 3.960 25 H 0.025 0.975 26 C 0.007 3.993 27 C -0.019 4.019 28 N -0.209 5.209 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.192 0.808 33 H 0.157 0.843 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.017 0.983 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -26.318 -2.035 -2.696 26.534 hybrid contribution 2.481 1.344 -0.480 2.862 sum -23.838 -0.691 -3.177 24.058 Atomic orbital electron populations 1.20890 0.85917 1.04991 1.04368 1.22146 0.98985 0.87947 0.90814 1.22247 0.93266 1.00995 1.02028 1.21798 0.95442 0.96954 0.91932 1.20750 0.92490 0.97214 1.09731 1.18693 0.87915 0.78480 0.80301 1.90772 1.68963 1.45904 1.40733 1.48247 1.06323 1.42334 1.35598 1.22242 0.95860 0.95143 0.89246 1.21720 0.93412 1.03519 0.96091 1.22221 0.95424 0.97987 0.96000 0.90205 1.22603 0.94977 1.01719 0.96679 1.21367 0.93496 0.95724 0.83814 1.44431 1.00455 1.75714 1.13164 1.19309 0.85771 1.35734 0.95853 0.90687 1.25551 0.99512 1.02142 0.98241 1.70142 1.18793 1.52985 1.17772 0.85184 0.79033 0.77322 0.78480 1.21541 1.21595 1.19687 1.21119 0.85085 0.96288 0.93529 0.97521 1.21349 0.78585 1.01693 0.97711 1.23163 0.89308 0.97485 0.91976 1.67670 1.09020 1.30060 1.14172 0.88985 0.90139 0.88087 0.80825 0.84291 0.87812 0.88812 0.86707 0.91814 0.89420 0.91287 0.95773 0.98252 0.94312 0.91048 0.92316 0.80671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.16 71.23 0.72 -0.10 16 2 C 0.14 2.10 6.78 42.57 0.29 2.39 16 3 C -0.17 -2.43 9.72 22.33 0.22 -2.21 16 4 C -0.04 -0.73 9.89 22.73 0.22 -0.51 16 5 C -0.20 -4.79 4.96 -19.99 -0.10 -4.89 16 6 C 0.56 18.03 7.26 86.78 0.63 18.66 16 7 O -0.58 -24.26 16.43 -3.87 -0.06 -24.32 16 8 N -0.59 -18.00 3.01 -823.02 -2.48 -20.49 16 9 C 0.10 2.01 5.03 86.53 0.44 2.45 16 10 C -0.11 -2.39 5.70 30.43 0.17 -2.22 16 11 C -0.10 -3.05 2.62 -10.07 -0.03 -3.07 16 12 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 13 C -0.12 -4.20 6.54 31.62 0.21 -3.99 16 14 C 0.18 8.89 5.45 86.85 0.47 9.36 16 15 N -0.61 -31.87 3.35 -669.33 -2.24 -34.11 16 16 C -0.24 -13.68 9.88 84.03 0.83 -12.85 16 17 H 0.08 4.26 7.41 -2.91 -0.02 4.24 16 18 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 19 N -0.95 -57.72 10.44 21.65 0.23 -57.50 16 20 Si 0.97 47.35 29.55 68.60 2.03 49.38 16 21 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 24 C 0.15 6.12 2.77 45.59 0.13 6.24 16 25 H 0.01 0.33 7.90 -2.38 -0.02 0.31 16 26 C 0.13 5.05 5.68 85.73 0.49 5.53 16 27 C 0.14 2.80 8.55 85.02 0.73 3.52 16 28 N -0.50 -9.62 10.25 -182.82 -1.87 -11.50 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.10 0.34 8.07 -2.39 -0.02 0.32 16 32 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.10 1.81 4.66 -2.39 -0.01 1.80 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.49 7.97 -2.39 -0.02 1.47 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 40 H 0.02 1.32 7.21 -2.39 -0.02 1.30 16 41 H 0.00 -0.04 7.77 -2.39 -0.02 -0.06 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.06 2.67 6.78 -2.39 -0.02 2.65 16 45 H 0.18 2.91 6.97 -2.91 -0.02 2.89 16 Total: -1.00 -76.83 355.12 2.46 -74.37 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.99 Total: 8.96 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 5.88 Total: 15.21 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -6.37 Total: -123.59 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.06 Total: -24.32 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -76.83 2.46 -74.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041942782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.559 kcal (2) G-P(sol) polarization free energy of solvation -76.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds