Wall clock time and date at job start Fri Apr 10 2020 23:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38351 * 120.34515 * 2 1 4 4 N 1.31930 * 121.07880 * 179.97438 * 3 2 1 5 5 C 1.31695 * 121.87663 * 359.75082 * 4 3 2 6 6 C 1.39519 * 120.56670 * 0.54230 * 5 4 3 7 7 C 1.47844 * 120.55863 * 179.72867 * 6 5 4 8 8 O 1.21546 * 119.99672 * 226.27103 * 7 6 5 9 9 N 1.34779 * 120.00035 * 46.26357 * 7 6 5 10 10 C 1.44468 * 117.13829 * 356.11858 * 9 7 6 11 11 C 1.50989 * 113.13293 * 148.25740 * 10 9 7 12 12 C 1.48612 * 116.02695 * 32.07017 * 11 10 9 13 13 H 1.08994 * 105.76561 * 206.06144 * 12 11 10 14 14 C 1.53310 * 114.95900 * 90.61644 * 12 11 10 15 15 C 1.54527 * 102.38795 * 196.31277 * 14 12 11 16 16 N 1.46883 * 106.65983 * 27.58376 * 15 14 12 17 17 C 1.36935 * 125.35923 * 164.83087 * 16 15 14 18 18 H 1.08004 * 120.00405 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00032 * 0.03150 * 17 16 15 20 20 N 1.31616 * 119.99708 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00086 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47249 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47171 * 120.00096 * 21 19 17 24 24 H 1.48499 * 109.47146 * 239.99550 * 21 19 17 25 25 C 1.48519 * 109.26547 * 344.82892 * 16 15 14 26 26 H 1.08992 * 109.79163 * 237.28742 * 25 16 15 27 27 C 1.43939 * 117.13532 * 176.14080 * 9 7 6 28 28 C 1.38355 * 120.34888 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46967 * 270.01287 * 1 2 3 30 30 H 1.08996 * 109.47473 * 30.01254 * 1 2 3 31 31 H 1.08996 * 109.46987 * 150.02072 * 1 2 3 32 32 H 1.07995 * 119.46194 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.71337 * 180.26749 * 5 4 3 34 34 H 1.08998 * 108.75404 * 269.19276 * 10 9 7 35 35 H 1.08997 * 108.75590 * 27.43526 * 10 9 7 36 36 H 1.08996 * 108.17599 * 153.77386 * 11 10 9 37 37 H 1.08999 * 108.16726 * 270.58076 * 11 10 9 38 38 H 1.08998 * 110.82415 * 314.53477 * 14 12 11 39 39 H 1.09000 * 110.82677 * 77.89189 * 14 12 11 40 40 H 1.08998 * 110.01878 * 146.88734 * 15 14 12 41 41 H 1.08999 * 110.01863 * 268.24283 * 15 14 12 42 42 H 0.97009 * 120.00225 * 180.02562 * 20 19 17 43 43 H 1.08999 * 108.42145 * 332.81450 * 27 9 7 44 44 H 1.08999 * 108.42171 * 90.23991 * 27 9 7 45 45 H 1.08000 * 120.85826 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2109 0.0005 5 6 4.2349 0.1015 0.0059 6 6 3.6054 -1.1436 -0.0001 7 6 4.4024 -2.3888 0.0000 8 8 4.1203 -3.2908 -0.7643 9 7 5.4418 -2.5237 0.8473 10 6 5.7759 -1.3821 1.6673 11 6 6.3420 -1.7644 3.0139 12 6 7.1372 -3.0192 3.0545 13 1 7.0600 -3.3857 4.0781 14 6 8.6397 -2.8411 2.8068 15 6 9.0966 -4.2829 2.4899 16 7 7.9342 -4.9775 1.9208 17 6 7.9756 -6.1650 1.2402 18 1 7.0644 -6.5999 0.8569 19 6 9.1889 -6.8099 1.0429 20 7 10.2995 -6.2797 1.5096 21 14 9.2454 -8.4302 0.1150 22 1 7.8717 -8.8099 -0.3021 23 1 10.1052 -8.2827 -1.0868 24 1 9.8043 -9.4863 0.9967 25 6 6.7070 -4.1889 2.2001 26 1 5.9907 -4.8020 2.7468 27 6 6.1218 -3.7922 0.8555 28 6 2.2061 -1.1940 0.0005 29 1 -0.3633 0.0002 1.0277 30 1 -0.3634 0.8898 -0.5140 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6629 2.1274 -0.0004 33 1 5.3135 0.1561 0.0105 34 1 6.5097 -0.7738 1.1388 35 1 4.8759 -0.7875 1.8236 36 1 6.9764 -0.9485 3.3600 37 1 5.5130 -1.8680 3.7140 38 1 8.8169 -2.1828 1.9563 39 1 9.1372 -2.4611 3.6991 40 1 9.9119 -4.2655 1.7667 41 1 9.4193 -4.7814 3.4039 42 1 11.1475 -6.7302 1.3714 43 1 5.4163 -4.5633 0.5459 44 1 6.9305 -3.7542 0.1256 45 1 1.6859 -2.1404 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041996127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:43 Heat of formation + Delta-G solvation = 40.104825 kcal Electronic energy + Delta-G solvation = -26797.562857 eV Core-core repulsion = 23201.986443 eV Total energy + Delta-G solvation = -3595.576415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14757 -39.72924 -38.19792 -35.63006 -33.94025 -33.24463 -32.54534 -31.49193 -29.42344 -28.67484 -27.57393 -25.45019 -24.78573 -23.47886 -22.92024 -22.43672 -20.44483 -19.90262 -17.86806 -17.48173 -17.13343 -16.87974 -16.53664 -15.87616 -15.27355 -14.98890 -14.72201 -14.44747 -14.25654 -14.03726 -13.76931 -13.44532 -13.36781 -13.12177 -12.91158 -12.68478 -12.49737 -12.35291 -12.07155 -11.78508 -11.55251 -11.42681 -11.08108 -10.84998 -10.75109 -10.27838 -10.08877 -10.01064 -9.95556 -9.93727 -9.63748 -9.56783 -9.49953 -9.10155 -8.63651 -8.29646 -6.91234 -5.70468 -3.08855 0.55616 0.93962 2.70466 3.13357 3.40604 3.47088 3.49334 3.52435 4.09130 4.36944 4.46022 4.48145 4.61752 4.66765 4.80568 4.85449 4.89572 5.05739 5.22187 5.24432 5.32800 5.37957 5.44577 5.53259 5.56182 5.60595 5.76712 5.77539 5.82976 5.91942 5.95229 6.03959 6.17084 6.22945 6.32141 6.46613 6.54134 6.57081 6.82770 6.90087 7.02531 7.47545 7.52633 7.61344 7.64098 7.83366 8.23814 8.28239 9.19965 9.78564 10.41833 11.36891 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.003469 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.670907 B = 8068.851230 C = 8947.612269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.143 4.143 3 C 0.110 3.890 4 N -0.482 5.482 5 C 0.121 3.879 6 C -0.167 4.167 7 C 0.545 3.455 8 O -0.530 6.530 9 N -0.579 5.579 10 C 0.108 3.892 11 C -0.108 4.108 12 C -0.093 4.093 13 H 0.057 0.943 14 C -0.136 4.136 15 C 0.166 3.834 16 N -0.596 5.596 17 C -0.227 4.227 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.165 3.835 26 H 0.043 0.957 27 C 0.103 3.897 28 C -0.030 4.030 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.020 0.980 42 H 0.251 0.749 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.212 16.287 1.811 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.145 4.145 3 C -0.047 4.047 4 N -0.189 5.189 5 C -0.037 4.037 6 C -0.172 4.172 7 C 0.332 3.668 8 O -0.407 6.407 9 N -0.310 5.310 10 C -0.016 4.016 11 C -0.146 4.146 12 C -0.113 4.113 13 H 0.075 0.925 14 C -0.175 4.175 15 C 0.042 3.958 16 N -0.321 5.321 17 C -0.355 4.355 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.057 3.943 26 H 0.061 0.939 27 C -0.021 4.021 28 C -0.056 4.056 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.670 16.391 1.406 22.042 hybrid contribution -0.262 -1.710 -0.354 1.766 sum -14.931 14.681 1.052 20.966 Atomic orbital electron populations 1.20730 0.89701 1.03411 1.02821 1.20894 0.97903 0.93756 1.01984 1.22850 0.90000 0.97552 0.94258 1.67735 1.07992 1.30805 1.12392 1.23215 1.00800 0.86484 0.93157 1.21054 0.95170 0.95439 1.05534 1.18313 0.80492 0.86442 0.81603 1.90800 1.69316 1.41395 1.39202 1.46755 1.31216 1.14594 1.38467 1.21025 1.00189 0.87881 0.92457 1.20343 0.99779 0.98456 0.96012 1.20040 0.96271 0.94262 1.00681 0.92463 1.22669 0.93806 1.00837 1.00156 1.21413 0.90905 0.85667 0.97832 1.44870 1.00210 1.22381 1.64635 1.19115 0.93674 0.95536 1.27196 0.90287 1.24788 0.95428 0.99151 1.00920 1.69941 0.97581 1.39093 1.50234 0.86032 0.77535 0.83071 0.79104 1.20381 1.21694 1.21774 1.20363 0.90677 0.91454 0.91830 0.93945 1.21713 0.96995 0.82433 1.00916 1.21534 0.92222 0.98899 0.92944 0.90684 0.90957 0.91050 0.82462 0.81790 0.92048 0.90452 0.90429 0.92131 0.92528 0.92091 0.89868 0.96193 0.93798 0.90542 0.90970 0.84081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.03 36.01 0.36 -0.26 16 2 C -0.14 -1.27 5.89 -104.54 -0.62 -1.89 16 3 C 0.11 1.00 10.85 -17.47 -0.19 0.81 16 4 N -0.48 -5.42 10.35 -12.91 -0.13 -5.55 16 5 C 0.12 1.41 8.65 -17.13 -0.15 1.26 16 6 C -0.17 -2.16 4.85 -104.82 -0.51 -2.67 16 7 C 0.55 8.92 7.18 -12.33 -0.09 8.84 16 8 O -0.53 -10.68 16.25 5.33 0.09 -10.60 16 9 N -0.58 -9.26 3.13 -180.29 -0.56 -9.82 16 10 C 0.11 1.34 4.86 -6.14 -0.03 1.31 16 11 C -0.11 -1.34 5.55 -29.89 -0.17 -1.50 16 12 C -0.09 -1.53 2.31 -93.55 -0.22 -1.75 16 13 H 0.06 0.94 8.01 -51.93 -0.42 0.53 16 14 C -0.14 -2.42 6.47 -25.77 -0.17 -2.59 16 15 C 0.17 3.93 5.54 -3.03 -0.02 3.91 16 16 N -0.60 -14.76 2.91 -164.58 -0.48 -15.24 16 17 C -0.23 -6.24 9.82 -15.06 -0.15 -6.39 16 18 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 19 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 20 N -0.92 -26.66 10.23 55.49 0.57 -26.09 16 21 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.16 3.32 3.56 -68.32 -0.24 3.07 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 C 0.10 2.03 5.35 -5.95 -0.03 2.00 16 28 C -0.03 -0.33 9.54 -38.87 -0.37 -0.70 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.17 1.71 6.04 -52.49 -0.32 1.40 16 34 H 0.06 0.70 7.12 -51.93 -0.37 0.33 16 35 H 0.08 0.84 5.21 -51.93 -0.27 0.57 16 36 H 0.08 0.82 7.93 -51.93 -0.41 0.40 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.08 2.22 6.43 -51.93 -0.33 1.89 16 41 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.08 1.63 7.04 -51.93 -0.37 1.27 16 44 H 0.07 1.62 7.84 -51.93 -0.41 1.21 16 45 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -32.36 352.55 -9.57 -41.93 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.66 Total: -0.36 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -2.67 Total: 3.17 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.61 Total: -56.70 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.36 -9.57 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041996127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.030 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds