Wall clock time and date at job start Fri Apr 10 2020 23:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38357 * 120.34640 * 2 1 4 4 N 1.31925 * 121.07630 * 179.97438 * 3 2 1 5 5 C 1.31692 * 121.88252 * 0.02562 * 4 3 2 6 6 C 1.39517 * 120.56630 * 359.74148 * 5 4 3 7 7 C 1.47843 * 120.56305 * 180.28520 * 6 5 4 8 8 O 1.21547 * 120.00227 * 222.10051 * 7 6 5 9 9 N 1.34781 * 119.99710 * 42.09746 * 7 6 5 10 10 C 1.47152 * 121.21242 * 5.58118 * 9 7 6 11 11 C 1.53336 * 107.71130 * 122.69363 * 10 9 7 12 12 C 1.53091 * 110.50006 * 57.56950 * 11 10 9 13 13 H 1.09000 * 113.05927 * 70.87240 * 12 11 10 14 14 C 1.56032 * 106.39396 * 195.29216 * 12 11 10 15 15 C 1.54505 * 102.61251 * 78.38300 * 14 12 11 16 16 N 1.47437 * 107.14691 * 22.84542 * 15 14 12 17 17 C 1.36937 * 126.05725 * 181.66144 * 16 15 14 18 18 H 1.08001 * 119.99553 * 179.97438 * 17 16 15 19 19 C 1.38803 * 120.00028 * 359.95775 * 17 16 15 20 20 N 1.31619 * 120.00558 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00002 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47024 * 59.99638 * 21 19 17 23 23 H 1.48504 * 109.47556 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46974 * 299.99972 * 21 19 17 25 25 C 1.46467 * 107.87914 * 1.62030 * 16 15 14 26 26 H 1.09004 * 108.41774 * 89.24078 * 25 16 15 27 27 C 1.46759 * 121.21287 * 185.86594 * 9 7 6 28 28 C 1.38354 * 120.34849 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47438 * 269.98186 * 1 2 3 30 30 H 1.08998 * 109.46933 * 29.98498 * 1 2 3 31 31 H 1.09003 * 109.46562 * 149.98318 * 1 2 3 32 32 H 1.07997 * 119.45944 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.71964 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.75884 * 242.33803 * 10 9 7 35 35 H 1.08994 * 109.76080 * 3.10348 * 10 9 7 36 36 H 1.09007 * 109.39421 * 297.24886 * 11 10 9 37 37 H 1.09003 * 109.16291 * 177.74961 * 11 10 9 38 38 H 1.09001 * 110.78140 * 320.09885 * 14 12 11 39 39 H 1.09001 * 110.93974 * 196.73911 * 14 12 11 40 40 H 1.08993 * 109.90184 * 263.46401 * 15 14 12 41 41 H 1.08995 * 110.04921 * 142.30354 * 15 14 12 42 42 H 0.96996 * 120.00607 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.22513 * 352.83381 * 27 9 7 44 44 H 1.09003 * 109.22794 * 112.19364 * 27 9 7 45 45 H 1.07996 * 120.85753 * 359.95661 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2108 0.0005 5 6 4.2349 0.1015 0.0005 6 6 3.6054 -1.1436 0.0054 7 6 4.4023 -2.3888 0.0118 8 8 4.0728 -3.3249 -0.6901 9 7 5.4943 -2.4861 0.7959 10 6 5.8491 -1.4189 1.7449 11 6 5.9204 -2.0432 3.1436 12 6 6.9362 -3.1882 3.1685 13 1 7.9682 -2.8451 3.0955 14 6 6.6571 -3.9962 4.4738 15 6 5.4205 -4.8395 4.0907 16 7 5.4059 -4.9465 2.6203 17 6 4.4567 -5.5855 1.8680 18 1 4.5428 -5.6033 0.7916 19 6 3.3842 -6.2107 2.4890 20 7 3.2797 -6.1897 3.8008 21 14 2.0890 -7.0818 1.4627 22 1 2.7287 -8.1655 0.6744 23 1 1.0573 -7.6643 2.3581 24 1 1.4517 -6.1084 0.5398 25 6 6.5860 -4.2473 2.1068 26 1 7.4122 -4.9567 2.0573 27 6 6.3761 -3.6573 0.7299 28 6 2.2061 -1.1940 -0.0005 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3632 -0.8899 -0.5141 32 1 1.6629 2.1275 0.0004 33 1 5.3136 0.1560 0.0014 34 1 6.8171 -0.9951 1.4777 35 1 5.0870 -0.6400 1.7253 36 1 4.9383 -2.4279 3.4188 37 1 6.2214 -1.2799 3.8612 38 1 6.4267 -3.3258 5.3018 39 1 7.5017 -4.6390 4.7221 40 1 4.5127 -4.3448 4.4357 41 1 5.4933 -5.8325 4.5342 42 1 2.5304 -6.6269 4.2348 43 1 5.9260 -4.4094 0.0819 44 1 7.3395 -3.3585 0.3167 45 1 1.6859 -2.1404 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041996130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:45 Heat of formation + Delta-G solvation = 36.776854 kcal Electronic energy + Delta-G solvation = -27781.698435 eV Core-core repulsion = 24185.977709 eV Total energy + Delta-G solvation = -3595.720726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74525 -39.47515 -37.89332 -35.10372 -33.70069 -32.82047 -32.26043 -31.03573 -29.10764 -28.40573 -27.38964 -25.12124 -24.51586 -23.32064 -22.74290 -22.25406 -20.01832 -19.80978 -18.37932 -17.19422 -17.02681 -16.56739 -16.32177 -15.46017 -15.01331 -14.69799 -14.30834 -14.12217 -13.94140 -13.85562 -13.49281 -13.11689 -13.01923 -12.98155 -12.76468 -12.61038 -12.58770 -12.06233 -11.82347 -11.59558 -11.41488 -11.23931 -10.91383 -10.79791 -10.67039 -10.12971 -10.06002 -9.86108 -9.76215 -9.75226 -9.63507 -9.48817 -9.24531 -8.88613 -8.51314 -8.16067 -6.75410 -5.62603 -2.94446 0.77346 1.17524 3.02865 3.32478 3.48701 3.51165 3.56544 3.81142 4.27540 4.58397 4.61289 4.71044 4.84271 4.92731 5.00693 5.08041 5.13927 5.32355 5.44583 5.46195 5.49180 5.53683 5.60572 5.68344 5.72180 5.79316 5.84424 5.95061 6.01021 6.09024 6.13291 6.15770 6.25209 6.30027 6.43286 6.47534 6.54682 6.62052 6.73857 6.93684 7.06699 7.63381 7.65660 7.78286 7.81668 7.92666 8.31855 8.56538 9.30920 9.91727 10.56032 11.49747 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011604 B = 0.006044 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.338687 B = 4631.871644 C = 6013.493126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.142 4.142 3 C 0.107 3.893 4 N -0.485 5.485 5 C 0.118 3.882 6 C -0.161 4.161 7 C 0.566 3.434 8 O -0.523 6.523 9 N -0.586 5.586 10 C 0.102 3.898 11 C -0.121 4.121 12 C -0.102 4.102 13 H 0.076 0.924 14 C -0.144 4.144 15 C 0.178 3.822 16 N -0.588 5.588 17 C -0.211 4.211 18 H 0.082 0.918 19 C -0.009 4.009 20 N -0.927 5.927 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.284 1.284 25 C 0.154 3.846 26 H 0.027 0.973 27 C 0.114 3.886 28 C -0.024 4.024 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.249 0.751 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 15.007 -3.509 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.144 4.144 3 C -0.049 4.049 4 N -0.193 5.193 5 C -0.040 4.040 6 C -0.166 4.166 7 C 0.353 3.647 8 O -0.399 6.399 9 N -0.319 5.319 10 C -0.021 4.021 11 C -0.159 4.159 12 C -0.122 4.122 13 H 0.094 0.906 14 C -0.182 4.182 15 C 0.054 3.946 16 N -0.313 5.313 17 C -0.339 4.339 18 H 0.100 0.900 19 C -0.204 4.204 20 N -0.575 5.575 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.211 1.211 25 C 0.045 3.955 26 H 0.045 0.955 27 C -0.009 4.009 28 C -0.051 4.051 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.494 15.146 -3.851 15.826 hybrid contribution -1.162 -1.353 -0.258 1.802 sum 1.333 13.792 -4.109 14.453 Atomic orbital electron populations 1.20734 0.89792 1.03251 1.02919 1.20898 0.97910 0.93735 1.01860 1.22775 0.89961 0.97433 0.94770 1.67674 1.08039 1.30843 1.12748 1.22997 1.00333 0.86587 0.94041 1.21080 0.95200 0.95386 1.04972 1.17880 0.80021 0.86297 0.80534 1.90794 1.68169 1.38415 1.42482 1.47682 1.25557 1.20381 1.38247 1.22058 1.00389 0.89924 0.89776 1.21905 1.01631 0.97241 0.95141 1.22388 0.97280 0.95318 0.97194 0.90550 1.23162 1.00312 0.98651 0.96091 1.21215 0.92628 0.96882 0.83915 1.44288 1.24053 1.61195 1.01813 1.19010 0.99709 1.25095 0.90127 0.90037 1.24695 0.98705 1.01363 0.95678 1.69948 1.31807 1.48975 1.06819 0.86281 0.81570 0.79594 0.78951 1.21282 1.21920 1.21106 1.20699 0.91552 0.92107 0.91124 0.95537 1.21445 0.92068 0.87848 0.99558 1.21643 0.92494 0.99049 0.91889 0.90614 0.91093 0.91016 0.82602 0.82172 0.91397 0.90080 0.90129 0.92014 0.92347 0.92708 0.93809 0.94069 0.94039 0.88540 0.92434 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.03 36.01 0.36 -0.64 16 2 C -0.14 -1.73 5.89 -104.53 -0.62 -2.34 16 3 C 0.11 1.24 10.85 -17.47 -0.19 1.05 16 4 N -0.49 -6.40 10.35 -12.91 -0.13 -6.54 16 5 C 0.12 1.60 8.57 -17.14 -0.15 1.45 16 6 C -0.16 -2.59 5.13 -104.82 -0.54 -3.13 16 7 C 0.57 10.85 7.34 -12.33 -0.09 10.75 16 8 O -0.52 -12.08 16.43 5.32 0.09 -11.99 16 9 N -0.59 -10.18 2.96 -174.90 -0.52 -10.70 16 10 C 0.10 1.41 5.14 -3.51 -0.02 1.39 16 11 C -0.12 -1.87 5.06 -26.51 -0.13 -2.01 16 12 C -0.10 -1.65 3.68 -88.43 -0.33 -1.98 16 13 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 14 C -0.14 -2.58 6.33 -24.32 -0.15 -2.73 16 15 C 0.18 4.23 4.62 -2.74 -0.01 4.22 16 16 N -0.59 -14.47 3.20 -164.43 -0.53 -14.99 16 17 C -0.21 -5.89 9.70 -15.06 -0.15 -6.03 16 18 H 0.08 2.33 6.51 -52.49 -0.34 1.99 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.93 -27.52 10.38 55.49 0.58 -26.95 16 21 Si 0.91 23.37 29.55 -169.99 -5.02 18.35 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 24 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 25 C 0.15 3.01 2.97 -68.31 -0.20 2.81 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 C 0.11 2.08 5.69 -4.78 -0.03 2.05 16 28 C -0.02 -0.37 9.50 -38.87 -0.37 -0.74 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.16 1.84 6.77 -52.49 -0.36 1.49 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.07 4.71 -51.93 -0.24 0.83 16 36 H 0.08 1.58 6.85 -51.92 -0.36 1.22 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.95 7.97 -51.93 -0.41 0.54 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 1.16 7.04 -51.93 -0.37 0.80 16 41 H 0.04 1.10 7.56 -51.93 -0.39 0.71 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.10 2.07 5.52 -51.93 -0.29 1.78 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 350.70 15.07 5.28 5.28 Total: -1.00 -33.34 350.70 -9.49 -42.84 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.54 Total: 0.93 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -2.70 Total: 3.77 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.60 Total: -59.18 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.34 -9.49 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041996130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.614 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds