Wall clock time and date at job start Fri Apr 10 2020 23:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38355 * 120.34641 * 2 1 4 4 N 1.31929 * 121.08113 * 180.02562 * 3 2 1 5 5 C 1.31692 * 121.87681 * 0.02562 * 4 3 2 6 6 C 1.39525 * 120.57167 * 0.02582 * 5 4 3 7 7 C 1.47840 * 120.56423 * 179.97438 * 6 5 4 8 8 O 1.21553 * 120.00044 * 229.29213 * 7 6 5 9 9 N 1.34774 * 119.99664 * 49.29039 * 7 6 5 10 10 C 1.46603 * 119.75585 * 356.24885 * 9 7 6 11 11 C 1.53885 * 110.67904 * 132.27378 * 10 9 7 12 12 C 1.51919 * 107.33659 * 51.81842 * 11 10 9 13 13 H 1.08991 * 111.55422 * 56.84431 * 12 11 10 14 14 C 1.53705 * 115.01853 * 184.56332 * 12 11 10 15 15 C 1.55294 * 101.81293 * 153.45425 * 14 12 11 16 16 N 1.48149 * 107.04467 * 337.55350 * 15 14 12 17 17 C 1.36942 * 126.39954 * 175.03710 * 16 15 14 18 18 H 1.07994 * 120.00383 * 179.97438 * 17 16 15 19 19 C 1.38817 * 119.99700 * 359.95067 * 17 16 15 20 20 N 1.31612 * 120.00119 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47343 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47338 * 120.00657 * 21 19 17 24 24 H 1.48500 * 109.47416 * 240.00434 * 21 19 17 25 25 C 1.45506 * 107.20675 * 354.99729 * 16 15 14 26 26 H 1.08997 * 109.56616 * 274.16262 * 25 16 15 27 27 C 1.47796 * 119.75374 * 176.26719 * 9 7 6 28 28 C 1.38354 * 120.34973 * 180.31089 * 2 1 3 29 29 H 1.08997 * 109.47445 * 89.99810 * 1 2 3 30 30 H 1.09006 * 109.46856 * 209.99583 * 1 2 3 31 31 H 1.09000 * 109.47068 * 329.98949 * 1 2 3 32 32 H 1.08003 * 119.45695 * 0.03096 * 3 2 1 33 33 H 1.07999 * 119.71796 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.22386 * 252.57005 * 10 9 7 35 35 H 1.08998 * 109.22735 * 11.97613 * 10 9 7 36 36 H 1.09004 * 109.88813 * 171.23516 * 11 10 9 37 37 H 1.08998 * 109.89672 * 292.33729 * 11 10 9 38 38 H 1.08999 * 110.96188 * 35.31882 * 14 12 11 39 39 H 1.08998 * 110.98795 * 271.59788 * 14 12 11 40 40 H 1.09001 * 109.91613 * 218.20500 * 15 14 12 41 41 H 1.09004 * 110.08775 * 96.99864 * 15 14 12 42 42 H 0.97005 * 120.00503 * 179.97438 * 20 19 17 43 43 H 1.09002 * 110.06519 * 350.47818 * 27 9 7 44 44 H 1.08998 * 110.06314 * 112.04248 * 27 9 7 45 45 H 1.07997 * 120.85900 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2109 -0.0005 5 6 4.2349 0.1016 -0.0015 6 6 3.6055 -1.1436 -0.0027 7 6 4.4024 -2.3888 -0.0044 8 8 4.1514 -3.2699 -0.8032 9 7 5.4072 -2.5469 0.8798 10 6 5.7589 -1.4491 1.7855 11 6 5.8963 -1.9598 3.2307 12 6 6.8437 -3.1470 3.2031 13 1 7.8073 -2.8804 2.7692 14 6 7.0228 -3.8671 4.5492 15 6 7.4023 -5.3025 4.0938 16 7 6.8963 -5.4675 2.7112 17 6 7.0972 -6.5494 1.8961 18 1 6.6781 -6.5608 0.9008 19 6 7.8400 -7.6311 2.3489 20 7 8.3507 -7.6172 3.5618 21 14 8.1146 -9.1066 1.2367 22 1 7.4417 -8.8760 -0.0668 23 1 9.5708 -9.2952 1.0151 24 1 7.5501 -10.3214 1.8775 25 6 6.1452 -4.2657 2.3815 26 1 5.1179 -4.3700 2.7304 27 6 6.1466 -3.8257 0.9288 28 6 2.2061 -1.1939 -0.0065 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.6628 2.1275 0.0005 33 1 5.3136 0.1561 -0.0023 34 1 6.7052 -1.0111 1.4680 35 1 4.9798 -0.6879 1.7463 36 1 6.3067 -1.1735 3.8643 37 1 4.9224 -2.2710 3.6083 38 1 6.0919 -3.8712 5.1161 39 1 7.8282 -3.4163 5.1290 40 1 6.9346 -6.0362 4.7505 41 1 8.4851 -5.4266 4.1104 42 1 8.8694 -8.3733 3.8784 43 1 5.6454 -4.5714 0.3117 44 1 7.1700 -3.6794 0.5834 45 1 1.6859 -2.1404 -0.0112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041996133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:48 Heat of formation + Delta-G solvation = 34.990457 kcal Electronic energy + Delta-G solvation = -26727.019777 eV Core-core repulsion = 23131.221587 eV Total energy + Delta-G solvation = -3595.798190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.03708 -39.65958 -38.15164 -35.51295 -33.96190 -32.96348 -32.46585 -31.23701 -29.39087 -28.55849 -27.58203 -25.20819 -24.63990 -23.46564 -22.65527 -22.18225 -20.21926 -19.83081 -19.14143 -17.43764 -17.25462 -16.74655 -16.44044 -15.88769 -15.10171 -14.66870 -14.53425 -14.34213 -14.19741 -13.92471 -13.70452 -13.38347 -13.28617 -13.10075 -13.00491 -12.87019 -12.63009 -12.25704 -12.20856 -11.88788 -11.55700 -11.31915 -10.97244 -10.82580 -10.77778 -10.30859 -10.13149 -10.02362 -9.98132 -9.90376 -9.68127 -9.54855 -9.50931 -9.10965 -8.64452 -8.50801 -6.87319 -5.73202 -3.07164 0.54089 0.91890 2.65607 2.98656 3.40621 3.47363 3.48957 3.49643 4.05507 4.33182 4.46353 4.49949 4.58905 4.65329 4.79588 4.85909 4.95869 5.08410 5.22574 5.24779 5.36255 5.36910 5.45641 5.59334 5.60708 5.65866 5.74820 5.76738 5.84481 5.90546 5.99329 6.04912 6.09660 6.14610 6.29291 6.33686 6.44349 6.53846 6.66384 6.71762 7.02161 7.44204 7.54038 7.58381 7.59513 7.80399 8.16129 8.22171 9.17698 9.80602 10.46952 11.39094 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.003449 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.729201 B = 8115.535126 C = 8882.088653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.141 4.141 3 C 0.110 3.890 4 N -0.482 5.482 5 C 0.122 3.878 6 C -0.165 4.165 7 C 0.558 3.442 8 O -0.531 6.531 9 N -0.596 5.596 10 C 0.099 3.901 11 C -0.118 4.118 12 C -0.114 4.114 13 H 0.078 0.922 14 C -0.138 4.138 15 C 0.177 3.823 16 N -0.592 5.592 17 C -0.229 4.229 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.156 3.844 26 H 0.023 0.977 27 C 0.117 3.883 28 C -0.030 4.030 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.252 0.748 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 18.939 -2.383 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.143 4.143 3 C -0.047 4.047 4 N -0.189 5.189 5 C -0.036 4.036 6 C -0.170 4.170 7 C 0.344 3.656 8 O -0.408 6.408 9 N -0.329 5.329 10 C -0.024 4.024 11 C -0.157 4.157 12 C -0.134 4.134 13 H 0.097 0.903 14 C -0.176 4.176 15 C 0.053 3.947 16 N -0.317 5.317 17 C -0.357 4.357 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.568 5.568 21 Si 0.740 3.260 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.047 3.953 26 H 0.040 0.960 27 C -0.005 4.005 28 C -0.056 4.056 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.735 19.020 -2.795 22.018 hybrid contribution -0.166 -1.654 -0.431 1.717 sum -10.901 17.366 -3.226 20.756 Atomic orbital electron populations 1.20737 0.89648 1.03429 1.02892 1.20901 0.97947 0.93722 1.01760 1.22844 0.89946 0.97575 0.94296 1.67715 1.08044 1.30752 1.12396 1.23036 1.00540 0.86467 0.93568 1.21035 0.95182 0.95358 1.05468 1.18142 0.79993 0.86165 0.81317 1.90811 1.68653 1.42785 1.38596 1.48226 1.33463 1.16036 1.35146 1.22041 1.01028 0.88836 0.90488 1.21780 1.00442 0.98575 0.94895 1.22281 0.98403 0.94471 0.98232 0.90333 1.22722 1.00300 0.98938 0.95629 1.21550 0.98965 0.89550 0.84666 1.44181 1.60471 1.14249 1.12782 1.19097 1.27724 0.93214 0.95655 0.90188 1.24785 1.00148 0.98475 0.96828 1.69950 1.39478 1.31008 1.16392 0.86070 0.77540 0.82660 0.79715 1.20351 1.21743 1.21748 1.20980 0.94858 0.87608 0.91814 0.95951 1.21788 0.96035 0.83171 0.99463 1.21544 0.92205 0.98971 0.92894 0.90641 0.91004 0.90925 0.82420 0.82022 0.91181 0.89984 0.90723 0.91442 0.92589 0.92175 0.94456 0.92527 0.93792 0.88854 0.90781 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.03 36.01 0.36 -0.28 16 2 C -0.14 -1.25 5.89 -104.54 -0.62 -1.87 16 3 C 0.11 0.99 10.85 -17.47 -0.19 0.80 16 4 N -0.48 -5.28 10.35 -12.91 -0.13 -5.41 16 5 C 0.12 1.36 8.55 -17.13 -0.15 1.22 16 6 C -0.17 -2.10 4.97 -104.82 -0.52 -2.62 16 7 C 0.56 8.92 7.26 -12.33 -0.09 8.83 16 8 O -0.53 -10.53 16.43 5.32 0.09 -10.44 16 9 N -0.60 -9.15 3.01 -173.85 -0.52 -9.68 16 10 C 0.10 1.18 5.06 -3.53 -0.02 1.16 16 11 C -0.12 -1.51 5.71 -26.82 -0.15 -1.66 16 12 C -0.11 -1.89 2.61 -89.54 -0.23 -2.13 16 13 H 0.08 1.34 8.13 -51.93 -0.42 0.91 16 14 C -0.14 -2.46 6.54 -25.15 -0.16 -2.63 16 15 C 0.18 4.20 5.46 -1.92 -0.01 4.18 16 16 N -0.59 -14.78 3.35 -162.91 -0.55 -15.32 16 17 C -0.23 -6.30 9.88 -15.06 -0.15 -6.45 16 18 H 0.08 2.16 7.41 -52.49 -0.39 1.78 16 19 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -26.83 10.43 55.49 0.58 -26.25 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 C 0.16 3.17 2.77 -67.82 -0.19 2.98 16 26 H 0.02 0.50 7.90 -51.93 -0.41 0.09 16 27 C 0.12 2.20 5.68 -3.95 -0.02 2.18 16 28 C -0.03 -0.33 9.57 -38.87 -0.37 -0.71 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 32 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.16 1.57 6.95 -52.49 -0.36 1.20 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.86 4.65 -51.93 -0.24 0.62 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.90 7.97 -51.93 -0.41 0.48 16 38 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 41 H 0.06 1.48 7.19 -51.93 -0.37 1.11 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.09 1.98 6.78 -51.93 -0.35 1.63 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -32.63 354.95 -9.55 -42.18 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.73 Total: -0.40 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.61 Total: 2.74 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.62 Total: -56.66 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.63 -9.55 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041996133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.166 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds