Wall clock time and date at job start Fri Apr 10 2020 23:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38353 * 120.34456 * 2 1 4 4 N 1.31929 * 121.07781 * 179.97438 * 3 2 1 5 5 C 1.31694 * 121.88099 * 0.02562 * 4 3 2 6 6 C 1.39526 * 120.56621 * 359.97330 * 5 4 3 7 7 C 1.47840 * 120.55838 * 180.02562 * 6 5 4 8 8 O 1.21552 * 119.99420 * 130.65745 * 7 6 5 9 9 N 1.34776 * 119.99854 * 310.65248 * 7 6 5 10 10 C 1.46592 * 119.75832 * 3.48313 * 9 7 6 11 11 C 1.53500 * 110.93457 * 227.68209 * 10 9 7 12 12 C 1.51978 * 107.36907 * 308.44583 * 11 10 9 13 13 H 1.08997 * 111.57245 * 302.99962 * 12 11 10 14 14 C 1.53702 * 114.99493 * 175.28554 * 12 11 10 15 15 C 1.55293 * 101.81493 * 206.54852 * 14 12 11 16 16 N 1.48153 * 107.04442 * 22.44866 * 15 14 12 17 17 C 1.36942 * 126.39997 * 184.97771 * 16 15 14 18 18 H 1.08002 * 120.00020 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99924 * 0.02562 * 17 16 15 20 20 N 1.31623 * 119.99700 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46510 * 90.00363 * 21 19 17 23 23 H 1.48503 * 109.46853 * 210.00148 * 21 19 17 24 24 H 1.48495 * 109.47365 * 330.00550 * 21 19 17 25 25 C 1.45503 * 107.20389 * 4.99542 * 16 15 14 26 26 H 1.09007 * 109.56482 * 85.84125 * 25 16 15 27 27 C 1.47804 * 119.75070 * 183.76047 * 9 7 6 28 28 C 1.38351 * 120.35098 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46989 * 90.00253 * 1 2 3 30 30 H 1.08998 * 109.47240 * 209.99862 * 1 2 3 31 31 H 1.08997 * 109.47466 * 329.99741 * 1 2 3 32 32 H 1.08002 * 119.46472 * 0.25515 * 3 2 1 33 33 H 1.08000 * 119.71666 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.22835 * 348.08905 * 10 9 7 35 35 H 1.09005 * 109.22487 * 107.44698 * 10 9 7 36 36 H 1.08997 * 109.96613 * 188.91039 * 11 10 9 37 37 H 1.08999 * 109.80117 * 67.88618 * 11 10 9 38 38 H 1.09000 * 110.95838 * 88.42021 * 14 12 11 39 39 H 1.08997 * 110.96301 * 324.68422 * 14 12 11 40 40 H 1.09002 * 109.92326 * 263.09545 * 15 14 12 41 41 H 1.09009 * 109.91780 * 141.79479 * 15 14 12 42 42 H 0.96997 * 119.99621 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.06433 * 247.93588 * 27 9 7 44 44 H 1.09001 * 110.06751 * 9.50119 * 27 9 7 45 45 H 1.08002 * 120.85709 * 0.04918 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1940 0.0000 4 7 3.5251 1.2109 0.0005 5 6 4.2349 0.1016 0.0005 6 6 3.6054 -1.1436 0.0006 7 6 4.4024 -2.3888 0.0012 8 8 4.1520 -3.2701 0.7999 9 7 5.4065 -2.5466 -0.8839 10 6 5.7535 -1.4507 -1.7936 11 6 5.8927 -1.9580 -3.2356 12 6 6.8403 -3.1460 -3.2091 13 1 7.8045 -2.8799 -2.7761 14 6 7.0176 -3.8655 -4.5557 15 6 7.3971 -5.3012 -4.1015 16 7 6.8926 -5.4667 -2.7184 17 6 7.0942 -6.5490 -1.9039 18 1 6.6761 -6.5608 -0.9082 19 6 7.8359 -7.6308 -2.3581 20 7 8.3459 -7.6162 -3.5715 21 14 8.1116 -9.1068 -1.2468 22 1 7.0171 -10.0899 -1.4492 23 1 9.4133 -9.7399 -1.5786 24 1 8.1234 -8.6640 0.1705 25 6 6.1424 -4.2648 -2.3872 26 1 5.1146 -4.3685 -2.7351 27 6 6.1455 -3.8256 -0.9344 28 6 2.2061 -1.1939 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6628 2.1275 0.0042 33 1 5.3135 0.1562 0.0014 34 1 4.9727 -0.6911 -1.7549 35 1 6.6990 -1.0088 -1.4790 36 1 6.3021 -1.1712 -3.8691 37 1 4.9187 -2.2689 -3.6133 38 1 7.8228 -3.4144 -5.1357 39 1 6.0861 -3.8689 -5.1216 40 1 8.4802 -5.4221 -4.1187 41 1 6.9284 -6.0344 -4.7580 42 1 8.8645 -8.3720 -3.8887 43 1 7.1693 -3.6798 -0.5900 44 1 5.6447 -4.5715 -0.3171 45 1 1.6859 -2.1404 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041996136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:50 Heat of formation + Delta-G solvation = 14.206491 kcal Electronic energy + Delta-G solvation = -26728.500177 eV Core-core repulsion = 23131.800727 eV Total energy + Delta-G solvation = -3596.699451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.07763 -40.81240 -39.56806 -36.99127 -34.81476 -34.57246 -33.47428 -32.86392 -30.85859 -30.19457 -28.24117 -26.61071 -26.29148 -24.54970 -23.81033 -23.28639 -21.83319 -21.37242 -20.36462 -18.78841 -18.28459 -18.02676 -17.51908 -17.17189 -16.87363 -16.09775 -15.92828 -15.71068 -15.33536 -15.15631 -14.80563 -14.63905 -14.41037 -14.20288 -13.95022 -13.88827 -13.71381 -13.47375 -13.46091 -13.14889 -13.07380 -12.81596 -12.76383 -12.53563 -12.14545 -12.02192 -11.80555 -11.57049 -11.47315 -11.30616 -11.07310 -10.85797 -10.74906 -10.48409 -9.89604 -9.79809 -8.93371 -7.88443 -5.23571 -0.29047 0.12492 1.42571 1.43437 1.45965 1.52920 1.79641 2.47363 2.66865 3.18626 3.29848 3.44390 3.51747 3.72481 3.78537 3.80662 3.89438 3.94359 3.94444 4.16097 4.22848 4.25432 4.28458 4.48327 4.53456 4.58970 4.68214 4.75174 4.78618 4.83571 4.85249 4.87853 4.95852 5.07204 5.12170 5.16839 5.19111 5.24725 5.32734 5.46080 5.55741 5.59393 5.64701 5.76579 6.16869 6.23774 6.80109 6.93251 7.06040 7.74079 8.40890 9.22434 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.003450 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.678619 B = 8114.831125 C = 8881.012955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.132 4.132 3 C 0.116 3.884 4 N -0.492 5.492 5 C 0.124 3.876 6 C -0.182 4.182 7 C 0.556 3.444 8 O -0.583 6.583 9 N -0.593 5.593 10 C 0.096 3.904 11 C -0.109 4.109 12 C -0.097 4.097 13 H 0.080 0.920 14 C -0.122 4.122 15 C 0.181 3.819 16 N -0.613 5.613 17 C -0.239 4.239 18 H 0.075 0.925 19 C -0.061 4.061 20 N -0.947 5.947 21 Si 0.972 3.028 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.272 1.272 25 C 0.148 3.852 26 H 0.007 0.993 27 C 0.130 3.870 28 C -0.045 4.045 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.194 0.806 33 H 0.176 0.824 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.024 0.976 41 H -0.001 1.001 42 H 0.248 0.752 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.325 22.709 2.243 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.134 4.134 3 C -0.040 4.040 4 N -0.200 5.200 5 C -0.033 4.033 6 C -0.187 4.187 7 C 0.345 3.655 8 O -0.463 6.463 9 N -0.324 5.324 10 C -0.025 4.025 11 C -0.147 4.147 12 C -0.116 4.116 13 H 0.098 0.902 14 C -0.160 4.160 15 C 0.056 3.944 16 N -0.338 5.338 17 C -0.368 4.368 18 H 0.093 0.907 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.800 3.200 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.197 1.197 25 C 0.040 3.960 26 H 0.024 0.976 27 C 0.006 3.994 28 C -0.071 4.071 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.211 0.789 33 H 0.193 0.807 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.017 0.983 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.878 22.850 2.645 25.889 hybrid contribution 0.065 -2.789 0.470 2.829 sum -11.813 20.061 3.115 23.488 Atomic orbital electron populations 1.20829 0.87307 1.04505 1.03973 1.21193 0.99515 0.92637 1.00073 1.23476 0.89495 0.98919 0.92149 1.67813 1.09070 1.30240 1.12879 1.23162 1.01232 0.85754 0.93196 1.20770 0.95391 0.94154 1.08377 1.18707 0.79665 0.86785 0.80367 1.90775 1.69904 1.44927 1.40710 1.48247 1.33074 1.15554 1.35560 1.22259 1.03127 0.87931 0.89224 1.21721 0.99224 0.97704 0.96097 1.22222 0.98966 0.94459 0.96002 0.90178 1.22602 1.01796 0.94911 0.96679 1.21366 0.96551 0.92663 0.83796 1.44436 1.60907 1.15273 1.13176 1.19315 1.27216 0.94384 0.95856 0.90693 1.25553 1.00557 1.01053 0.98241 1.70147 1.40259 1.31448 1.17775 0.85182 0.76837 0.79513 0.78472 1.21523 1.21586 1.19698 1.21110 0.93811 0.87544 0.93510 0.97573 1.21359 0.95852 0.84421 0.97738 1.21678 0.91916 0.99952 0.93563 0.89382 0.91194 0.88679 0.78902 0.80720 0.87751 0.88755 0.86667 0.91837 0.89404 0.91294 0.95762 0.98269 0.94315 0.90996 0.92315 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.03 71.24 0.71 -0.19 16 2 C -0.13 -1.97 5.89 -19.81 -0.12 -2.08 16 3 C 0.12 1.63 10.85 84.71 0.92 2.55 16 4 N -0.49 -9.12 10.35 -194.75 -2.01 -11.13 16 5 C 0.12 2.46 8.55 85.02 0.73 3.19 16 6 C -0.18 -4.43 4.96 -19.99 -0.10 -4.53 16 7 C 0.56 18.02 7.26 86.78 0.63 18.65 16 8 O -0.58 -24.29 16.43 -3.88 -0.06 -24.35 16 9 N -0.59 -17.98 3.01 -822.98 -2.48 -20.46 16 10 C 0.10 1.99 5.03 86.53 0.44 2.43 16 11 C -0.11 -2.39 5.70 30.43 0.17 -2.21 16 12 C -0.10 -3.05 2.62 -10.08 -0.03 -3.07 16 13 H 0.08 2.55 8.13 -2.39 -0.02 2.53 16 14 C -0.12 -4.20 6.54 31.62 0.21 -3.99 16 15 C 0.18 8.89 5.45 86.85 0.47 9.36 16 16 N -0.61 -31.89 3.35 -669.33 -2.24 -34.13 16 17 C -0.24 -13.75 9.88 84.03 0.83 -12.92 16 18 H 0.08 4.26 7.41 -2.91 -0.02 4.24 16 19 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 20 N -0.95 -57.61 10.44 21.65 0.23 -57.39 16 21 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 25 C 0.15 6.13 2.77 45.59 0.13 6.26 16 26 H 0.01 0.30 7.90 -2.38 -0.02 0.28 16 27 C 0.13 5.03 5.68 85.73 0.49 5.52 16 28 C -0.04 -0.96 9.57 22.73 0.22 -0.74 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 31 H 0.09 0.40 8.09 -2.39 -0.02 0.38 16 32 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 33 H 0.18 2.87 6.97 -2.91 -0.02 2.85 16 34 H 0.10 1.80 4.67 -2.39 -0.01 1.79 16 35 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.49 7.97 -2.39 -0.02 1.47 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 40 H 0.02 1.32 7.21 -2.39 -0.02 1.31 16 41 H 0.00 -0.05 7.78 -2.38 -0.02 -0.07 16 42 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.06 2.67 6.78 -2.39 -0.02 2.65 16 45 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -76.61 354.97 2.60 -74.01 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.99 Total: 8.97 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 6.16 Total: 15.15 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -6.51 Total: -123.11 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.35 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -76.61 2.60 -74.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041996136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.217 kcal (2) G-P(sol) polarization free energy of solvation -76.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds