Wall clock time and date at job start Fri Apr 10 2020 23:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21284 * 119.99747 * 2 1 4 4 N 1.34772 * 120.00127 * 179.97438 * 2 1 3 5 5 C 1.39923 * 120.00194 * 185.27528 * 4 2 1 6 6 C 1.38870 * 120.07015 * 33.29399 * 5 4 2 7 7 C 1.38115 * 119.93292 * 180.02562 * 6 5 4 8 8 C 1.38281 * 120.06246 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.92325 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47356 * 90.00260 * 9 8 7 11 11 N 1.46901 * 109.47647 * 180.02562 * 10 9 8 12 12 C 1.46894 * 111.00281 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47103 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.47168 * 305.00356 * 13 12 11 15 15 C 1.47206 * 109.46808 * 65.00057 * 13 12 11 16 16 N 9.57190 * 150.37402 * 47.14223 * 5 1 2 17 17 C 1.53000 * 109.47443 * 184.99877 * 13 12 11 18 18 C 1.50696 * 109.47293 * 175.00345 * 17 13 12 19 19 H 1.07999 * 119.99885 * 359.97438 * 18 17 13 20 20 C 1.37874 * 119.99747 * 179.72699 * 18 17 13 21 21 N 1.31509 * 120.00268 * 0.27711 * 20 18 17 22 22 Si 1.86804 * 119.99902 * 180.27205 * 20 18 17 23 23 H 1.48506 * 109.46930 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46812 * 119.99959 * 22 20 18 25 25 H 1.48492 * 109.47363 * 239.99914 * 22 20 18 26 26 C 1.38278 * 120.14938 * 0.26165 * 8 7 6 27 27 C 1.38118 * 120.06693 * 359.48469 * 26 8 7 28 28 H 1.09000 * 109.47196 * 239.99861 * 1 2 3 29 29 H 1.09001 * 109.47073 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46932 * 120.00228 * 1 2 3 31 31 H 0.97005 * 119.99912 * 5.27561 * 4 2 1 32 32 H 1.08004 * 120.03604 * 359.97438 * 6 5 4 33 33 H 1.07994 * 119.96683 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47115 * 329.99701 * 9 8 7 35 35 H 1.09004 * 109.46817 * 210.00327 * 9 8 7 36 36 H 1.09001 * 109.47464 * 59.99655 * 10 9 8 37 37 H 1.09004 * 109.47212 * 299.99825 * 10 9 8 38 38 H 1.00899 * 110.99633 * 303.95317 * 11 10 9 39 39 H 1.09007 * 109.47415 * 60.00123 * 12 11 10 40 40 H 1.08997 * 109.47260 * 300.00136 * 12 11 10 41 41 H 1.09004 * 109.46493 * 55.00108 * 17 13 12 42 42 H 1.09000 * 109.46857 * 295.00557 * 17 13 12 43 43 H 0.97006 * 120.00161 * 180.02562 * 21 20 18 44 44 H 1.07995 * 119.96836 * 179.74882 * 26 8 7 45 45 H 1.08001 * 120.03595 * 180.26174 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5758 -1.1697 0.1119 6 6 4.2150 -0.1975 0.8700 7 6 5.5920 -0.2023 0.9776 8 6 6.3338 -1.1743 0.3318 9 6 7.8361 -1.1763 0.4509 10 6 8.2511 -2.0224 1.6562 11 7 9.7155 -2.0239 1.7727 12 6 10.1514 -2.8278 2.9222 13 6 11.6787 -2.8060 3.0101 14 1 12.1020 -3.1378 2.0621 15 6 12.1340 -1.4360 3.2979 16 7 12.4852 -0.3813 3.5209 17 6 12.1387 -3.7420 4.1296 18 6 13.6439 -3.8152 4.1364 19 1 14.2152 -3.2510 3.4143 20 6 14.2916 -4.5986 5.0679 21 7 13.5958 -5.2862 5.9469 22 14 16.1577 -4.6835 5.0813 23 1 16.7001 -3.8237 3.9988 24 1 16.6654 -4.2067 6.3928 25 1 16.5910 -6.0870 4.8633 26 6 5.7007 -2.1409 -0.4278 27 6 4.3237 -2.1446 -0.5351 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 1.6990 -2.0055 -0.0763 32 1 3.6361 0.5622 1.3743 33 1 6.0897 0.5537 1.5666 34 1 8.1914 -0.1546 0.5846 35 1 8.2719 -1.5968 -0.4555 36 1 7.8959 -3.0442 1.5225 37 1 7.8154 -1.6020 2.5626 38 1 10.1457 -2.3489 0.9198 39 1 9.8097 -3.8554 2.7975 40 1 9.7285 -2.4129 3.8371 41 1 11.7271 -4.7375 3.9628 42 1 11.7891 -3.3603 5.0888 43 1 14.0516 -5.8370 6.6025 44 1 6.2832 -2.8963 -0.9342 45 1 3.8295 -2.9023 -1.1250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548786912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:39 Heat of formation + Delta-G solvation = -3.892756 kcal Electronic energy + Delta-G solvation = -23913.972807 eV Core-core repulsion = 20316.488514 eV Total energy + Delta-G solvation = -3597.484293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87074 -39.04582 -37.42452 -35.89277 -35.00914 -33.66623 -32.54732 -31.28561 -31.18093 -30.08274 -27.68633 -25.94453 -23.52357 -23.17833 -22.32520 -21.80729 -21.32324 -20.65257 -18.20252 -17.37464 -17.07298 -16.43811 -16.11177 -15.84529 -15.32069 -14.92824 -14.76216 -14.63633 -14.30197 -14.16753 -13.72764 -13.65473 -13.35419 -13.23835 -13.08768 -12.81870 -12.68110 -12.37704 -12.07240 -11.89653 -11.74980 -11.59269 -11.50820 -11.19430 -11.07968 -10.90945 -10.69026 -10.62327 -10.49950 -10.24778 -10.22627 -9.53836 -9.20847 -9.14987 -8.46201 -8.31662 -8.27462 -6.09495 -4.12525 0.96560 1.18697 2.14242 2.62424 3.28729 3.37072 3.41836 3.53285 3.78036 3.87427 4.20116 4.22177 4.42446 4.58607 4.68201 4.73181 4.78235 4.88808 4.97177 5.00037 5.15671 5.17756 5.22989 5.28795 5.33462 5.35324 5.56418 5.57764 5.75158 5.78969 5.91147 5.97368 6.02738 6.04077 6.09277 6.22894 6.40525 6.49006 6.51057 6.77642 6.92278 7.10513 7.42636 7.50143 7.54441 7.63850 7.86108 8.23583 8.61326 8.92640 9.53073 11.01413 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.033953 B = 0.001717 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.473768 B =16305.124078 C =16539.317590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.524 6.524 4 N -0.675 5.675 5 C 0.134 3.866 6 C -0.118 4.118 7 C -0.095 4.095 8 C -0.089 4.089 9 C -0.079 4.079 10 C 0.067 3.933 11 N -0.695 5.695 12 C 0.067 3.933 13 C 0.009 3.991 14 H 0.099 0.901 15 C 0.256 3.744 16 N -0.479 5.479 17 C 0.031 3.969 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.892 5.892 22 Si 0.892 3.108 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.097 4.097 27 C -0.144 4.144 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.411 0.589 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.341 0.659 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.026 0.974 43 H 0.262 0.738 44 H 0.126 0.874 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.048 2.664 -14.717 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.296 3.704 3 O -0.399 6.399 4 N -0.321 5.321 5 C 0.041 3.959 6 C -0.138 4.138 7 C -0.113 4.113 8 C -0.090 4.090 9 C -0.117 4.117 10 C -0.063 4.063 11 N -0.326 5.326 12 C -0.063 4.063 13 C -0.013 4.013 14 H 0.117 0.883 15 C -0.061 4.061 16 N -0.156 5.156 17 C -0.008 4.008 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.116 4.116 27 C -0.164 4.164 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.246 0.754 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.158 0.842 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.144 0.856 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -27.123 5.521 -13.870 30.960 hybrid contribution 0.446 -1.956 -0.334 2.034 sum -26.677 3.565 -14.204 30.432 Atomic orbital electron populations 1.21936 0.90687 1.06073 1.04585 1.21034 0.90928 0.83184 0.75251 1.90768 1.70606 1.31220 1.47350 1.43606 1.05457 1.09861 1.73194 1.17724 0.82463 0.97881 0.97846 1.21102 0.94834 0.99238 0.98642 1.21008 0.93103 0.98303 0.98904 1.19890 0.95894 0.95391 0.97848 1.20576 0.90299 1.02177 0.98620 1.21890 0.88347 0.97861 0.98177 1.60494 1.06617 1.58244 1.07260 1.22059 0.94377 0.95792 0.94052 1.19219 0.93100 0.85445 1.03547 0.88319 1.28759 0.91653 0.93982 0.91746 1.80885 1.10473 1.13748 1.10471 1.19176 0.96733 0.93306 0.91574 1.21191 0.91321 1.27719 1.16148 0.92415 1.24957 0.98443 0.95338 0.95279 1.69948 1.35395 1.29329 1.18370 0.86533 0.85662 0.77778 0.78093 1.19656 1.20972 1.20884 1.20859 0.93548 0.98359 0.98788 1.20835 0.94158 1.00262 1.01157 0.88951 0.88526 0.89113 0.75373 0.85042 0.85482 0.90021 0.90997 0.95044 0.90960 0.84153 0.93287 0.90540 0.94457 0.95549 0.92869 0.85592 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 10.32 36.01 0.37 -0.14 16 2 C 0.51 3.84 7.68 -10.98 -0.08 3.75 16 3 O -0.52 -6.45 14.77 5.55 0.08 -6.37 16 4 N -0.68 -4.29 5.34 -9.86 -0.05 -4.34 16 5 C 0.13 1.23 6.28 -83.70 -0.53 0.70 16 6 C -0.12 -1.27 8.66 -39.39 -0.34 -1.62 16 7 C -0.09 -0.99 9.69 -39.61 -0.38 -1.37 16 8 C -0.09 -0.87 5.14 -104.59 -0.54 -1.41 16 9 C -0.08 -0.76 5.60 -27.88 -0.16 -0.92 16 10 C 0.07 0.72 5.67 -3.83 -0.02 0.70 16 11 N -0.70 -8.86 6.20 -113.78 -0.71 -9.57 16 12 C 0.07 0.98 5.05 -3.83 -0.02 0.96 16 13 C 0.01 0.16 2.35 -93.40 -0.22 -0.06 16 14 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 15 C 0.26 5.39 13.66 -20.83 -0.28 5.10 16 16 N -0.48 -11.03 18.52 42.07 0.78 -10.25 16 17 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 18 C -0.53 -14.02 8.60 -34.44 -0.30 -14.32 16 19 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 22 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C -0.10 -0.84 9.69 -39.61 -0.38 -1.22 16 27 C -0.14 -1.16 9.96 -39.39 -0.39 -1.55 16 28 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.10 0.34 8.12 -51.93 -0.42 -0.09 16 30 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 31 H 0.41 1.10 8.82 -40.82 -0.36 0.74 16 32 H 0.13 1.52 6.41 -52.48 -0.34 1.19 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.34 3.83 8.73 -39.29 -0.34 3.49 16 39 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -34.34 388.81 -8.73 -43.07 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.91 Total: -0.73 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.50 Total: -9.18 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.76 Total: -48.97 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: 0.08 Total: -6.37 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.34 -8.73 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548786912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.173 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds