Wall clock time and date at job start Fri Apr 10 2020 23:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99643 * 2 1 4 4 N 1.46493 * 109.47297 * 125.00055 * 3 2 1 5 5 C 1.46505 * 119.99871 * 269.99612 * 4 3 2 6 6 C 1.50699 * 109.46930 * 270.00184 * 5 4 3 7 7 H 1.08001 * 120.00638 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99764 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00419 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00095 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46695 * 90.00001 * 10 8 6 12 12 H 1.48501 * 109.47084 * 209.99813 * 10 8 6 13 13 H 1.48490 * 109.46951 * 330.00283 * 10 8 6 14 14 C 1.34770 * 120.00279 * 89.99948 * 4 3 2 15 15 O 1.21290 * 120.00291 * 180.02562 * 14 4 3 16 16 C 1.50698 * 120.00024 * 359.97438 * 14 4 3 17 17 C 1.53000 * 109.47535 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.47794 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47490 * 180.02562 * 18 17 16 20 20 C 1.50693 * 109.47229 * 180.02562 * 19 18 17 21 21 C 1.38233 * 120.00207 * 89.99423 * 20 19 18 22 22 C 1.38234 * 120.00037 * 179.72405 * 21 20 19 23 23 C 1.38234 * 120.00240 * 0.26327 * 22 21 20 24 24 C 1.50700 * 120.00260 * 179.97438 * 23 22 21 25 25 C 1.38238 * 119.99693 * 0.02562 * 23 22 21 26 26 C 1.38234 * 120.00047 * 359.95697 * 25 23 22 27 27 H 1.08006 * 119.99322 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00588 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00360 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47192 * 4.99167 * 3 2 1 31 31 H 1.09002 * 109.46886 * 244.99961 * 3 2 1 32 32 H 1.08999 * 109.46808 * 29.99884 * 5 4 3 33 33 H 1.08995 * 109.47343 * 150.00212 * 5 4 3 34 34 H 0.96997 * 120.00163 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46813 * 60.00562 * 16 14 4 36 36 H 1.08993 * 109.47239 * 300.00301 * 16 14 4 37 37 H 1.08999 * 109.47137 * 59.99751 * 17 16 14 38 38 H 1.09006 * 109.47194 * 300.00482 * 17 16 14 39 39 H 1.09004 * 109.46861 * 59.99731 * 18 17 16 40 40 H 1.09006 * 109.46881 * 300.00351 * 18 17 16 41 41 H 1.09000 * 109.47015 * 60.00054 * 19 18 17 42 42 H 1.09001 * 109.46743 * 299.99806 * 19 18 17 43 43 H 1.08002 * 120.00157 * 0.02562 * 21 20 19 44 44 H 1.07999 * 120.00009 * 180.28389 * 22 21 20 45 45 H 1.09000 * 109.46827 * 89.99810 * 24 23 22 46 46 H 1.08999 * 109.47240 * 210.00239 * 24 23 22 47 47 H 1.08999 * 109.46861 * 329.99859 * 24 23 22 48 48 H 1.08001 * 119.99658 * 179.97438 * 25 23 22 49 49 H 1.07999 * 119.99990 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5587 1.8652 2.4248 6 6 2.8441 3.3439 2.4802 7 1 3.3031 3.8374 1.6362 8 6 2.5182 4.0670 3.6079 9 7 1.9588 3.4664 4.6355 10 14 2.8725 5.8999 3.6769 11 1 1.7002 6.6504 3.1595 12 1 3.1357 6.3006 5.0824 13 1 4.0630 6.2056 2.8438 14 6 4.2496 0.8665 0.9824 15 8 5.0197 0.8883 1.9192 16 6 4.6969 0.3176 -0.3479 17 6 6.1531 -0.1409 -0.2470 18 6 6.6074 -0.6976 -1.5978 19 6 8.0634 -1.1566 -1.4966 20 6 8.5111 -1.7043 -2.8272 21 6 9.0832 -0.8636 -3.7635 22 6 9.4991 -1.3671 -4.9819 23 6 9.3378 -2.7103 -5.2661 24 6 9.7906 -3.2591 -6.5945 25 6 8.7602 -3.5499 -4.3320 26 6 8.3447 -3.0464 -3.1135 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1317 0.0894 31 1 2.6212 1.4027 -0.9314 32 1 1.4887 1.6969 2.5458 33 1 3.0988 1.3607 3.2259 34 1 1.7292 3.9752 5.4287 35 1 4.6120 1.0939 -1.1083 36 1 4.0678 -0.5294 -0.6216 37 1 6.2377 -0.9173 0.5133 38 1 6.7825 0.7059 0.0269 39 1 6.5229 0.0792 -2.3578 40 1 5.9781 -1.5442 -1.8720 41 1 8.1474 -1.9335 -0.7366 42 1 8.6930 -0.3101 -1.2221 43 1 9.2098 0.1857 -3.5413 44 1 9.9502 -0.7112 -5.7117 45 1 10.8274 -3.5867 -6.5179 46 1 9.1617 -4.1052 -6.8716 47 1 9.7102 -2.4823 -7.3550 48 1 8.6339 -4.5992 -4.5542 49 1 7.8938 -3.7024 -2.3836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359439173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:13:33 Heat of formation + Delta-G solvation = -38.677743 kcal Electronic energy + Delta-G solvation = -24920.857823 eV Core-core repulsion = 21425.405483 eV Total energy + Delta-G solvation = -3495.452340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77833 -40.31228 -37.31506 -36.62601 -35.14713 -34.03500 -33.64713 -31.75955 -31.25983 -29.57223 -27.64744 -26.83262 -25.39724 -23.95401 -23.56158 -22.13319 -21.38535 -21.08118 -19.78341 -18.64080 -17.71889 -17.27899 -16.95498 -16.86860 -16.34793 -16.19629 -15.90025 -15.72462 -15.30446 -14.71653 -14.46459 -14.43441 -14.22281 -14.17274 -14.07188 -13.63774 -13.56915 -13.35211 -13.00342 -12.96957 -12.84798 -12.81682 -12.56406 -12.42145 -12.27858 -12.22347 -12.09791 -11.97627 -11.75457 -11.67649 -11.62133 -11.39891 -10.65262 -10.55133 -10.30047 -9.78121 -9.44555 -9.30648 -8.22897 -6.37935 0.46846 0.54617 1.33810 1.35640 1.38378 1.48804 1.88092 2.34593 2.53962 2.87734 3.06228 3.67970 3.88837 3.93111 4.02988 4.07970 4.11045 4.17777 4.21218 4.26674 4.33419 4.45320 4.56529 4.60717 4.64198 4.70238 4.76840 4.84948 4.85801 4.88197 4.93870 4.95664 5.03439 5.04404 5.08809 5.19432 5.23372 5.24294 5.35942 5.37161 5.49727 5.54020 5.57716 5.72161 5.75482 5.77173 5.81098 5.97649 6.06443 6.19168 6.69757 6.81401 7.28141 7.51671 8.84180 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.002197 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.363615 B =12742.668562 C =13619.241338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.602 5.602 5 C 0.263 3.737 6 C -0.542 4.542 7 H 0.053 0.947 8 C 0.005 3.995 9 N -0.929 5.929 10 Si 0.969 3.031 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.492 3.508 15 O -0.600 6.600 16 C -0.125 4.125 17 C -0.098 4.098 18 C -0.098 4.098 19 C -0.080 4.080 20 C -0.094 4.094 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.105 4.105 24 C -0.112 4.112 25 C -0.129 4.129 26 C -0.125 4.125 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.019 0.981 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.136 0.864 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.424 -13.403 -23.949 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.332 5.332 5 C 0.142 3.858 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.194 4.194 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.197 1.197 14 C 0.282 3.718 15 O -0.482 6.482 16 C -0.164 4.164 17 C -0.137 4.137 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.094 4.094 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.105 4.105 24 C -0.169 4.169 25 C -0.146 4.146 26 C -0.143 4.143 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.037 0.963 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.145 0.855 44 H 0.152 0.848 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.154 0.846 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.734 -13.348 -23.290 28.554 hybrid contribution -0.036 1.017 0.988 1.418 sum 9.698 -12.331 -22.302 27.267 Atomic orbital electron populations 1.24044 0.95619 1.02790 0.98585 1.23358 0.96766 0.98404 1.01631 1.20823 0.92674 0.96181 0.89208 1.48263 1.12026 1.59936 1.12952 1.18667 0.93679 0.92733 0.80765 1.21709 1.40503 0.94437 1.01389 0.92832 1.25897 0.94711 1.03899 0.94863 1.70061 1.42869 1.38101 1.05802 0.85399 0.78888 0.78971 0.77452 1.18712 1.20647 1.19735 1.21613 0.81218 0.77393 0.91610 1.90628 1.54059 1.58734 1.44754 1.21736 0.98699 1.03070 0.92942 1.21283 0.93914 1.00505 0.97953 1.21462 0.95151 1.01123 0.95769 1.20589 0.96541 1.00979 0.93655 1.20010 0.98943 0.94096 0.96316 1.21264 0.99158 1.00103 0.93976 1.21280 1.00653 0.95464 0.97311 1.20262 0.98875 0.93923 0.97433 1.20816 1.01822 1.01656 0.92583 1.21290 0.99298 1.00379 0.93676 1.21265 1.00325 0.95098 0.97643 0.86561 0.88483 0.86562 0.90804 0.87290 0.96329 0.98787 0.92434 0.87160 0.86741 0.92791 0.93246 0.91099 0.90776 0.90960 0.91235 0.85476 0.84776 0.90621 0.90806 0.90890 0.84647 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 14.32 67.78 0.97 -3.19 16 2 C -0.18 -4.88 9.74 25.65 0.25 -4.63 16 3 C 0.13 4.19 5.65 85.64 0.48 4.68 16 4 N -0.60 -26.03 2.44 -830.51 -2.03 -28.05 16 5 C 0.26 14.62 5.16 85.63 0.44 15.06 16 6 C -0.54 -31.89 9.39 25.60 0.24 -31.65 16 7 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.30 5.46 84.65 0.46 0.76 16 9 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 10 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 14 C 0.49 20.73 7.67 87.66 0.67 21.40 16 15 O -0.60 -31.86 15.56 -3.06 -0.05 -31.91 16 16 C -0.13 -3.41 4.25 29.85 0.13 -3.28 16 17 C -0.10 -2.59 4.50 30.59 0.14 -2.46 16 18 C -0.10 -1.86 5.20 30.59 0.16 -1.70 16 19 C -0.08 -1.52 5.34 29.84 0.16 -1.36 16 20 C -0.09 -1.75 5.13 -19.87 -0.10 -1.85 16 21 C -0.13 -2.27 9.70 22.27 0.22 -2.06 16 22 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 23 C -0.10 -1.60 5.88 -19.86 -0.12 -1.72 16 24 C -0.11 -1.10 10.01 71.24 0.71 -0.39 16 25 C -0.13 -2.02 9.70 22.27 0.22 -1.80 16 26 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 27 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.10 2.36 7.84 -2.91 -0.02 2.34 16 29 H 0.12 2.82 7.83 -2.91 -0.02 2.80 16 30 H 0.07 2.49 7.72 -2.39 -0.02 2.47 16 31 H 0.11 2.64 6.44 -2.39 -0.02 2.62 16 32 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 33 H -0.01 -0.39 7.42 -2.39 -0.02 -0.40 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.11 2.51 7.40 -2.39 -0.02 2.49 16 36 H 0.11 2.47 7.77 -2.39 -0.02 2.45 16 37 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 38 H 0.05 1.50 8.10 -2.38 -0.02 1.48 16 39 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 42 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 43 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.07 0.59 8.09 -2.39 -0.02 0.58 16 47 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 48 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 49 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -76.14 408.54 6.58 -69.55 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.88 Total: 17.75 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 5.46 Total: -18.02 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -1.74 Total: -85.00 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.05 Total: -31.91 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.14 6.58 -69.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359439173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.875 kcal (2) G-P(sol) polarization free energy of solvation -76.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds