Wall clock time and date at job start Fri Apr 10 2020 23:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 108.44815 * 2 1 4 4 C 1.38242 * 119.99861 * 185.40583 * 3 2 1 5 5 C 1.38235 * 119.99776 * 179.80510 * 4 3 2 6 6 C 1.38236 * 120.00073 * 0.42401 * 5 4 3 7 7 C 1.38237 * 119.99832 * 359.80846 * 6 5 4 8 8 C 1.38230 * 120.00161 * 0.02562 * 7 6 5 9 9 C 1.52572 * 108.51346 * 117.68765 * 2 1 3 10 10 C 1.51033 * 109.27387 * 35.95617 * 9 2 1 11 11 C 1.53946 * 109.97121 * 92.06775 * 10 9 2 12 12 N 1.47606 * 112.14186 * 319.41951 * 11 10 9 13 13 C 1.34773 * 118.64428 * 137.88767 * 12 11 10 14 14 O 1.21287 * 119.99671 * 179.97438 * 13 12 11 15 15 C 1.50697 * 120.00365 * 359.97438 * 13 12 11 16 16 C 1.52998 * 109.47194 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.46873 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00626 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00135 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00431 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99908 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46936 * 89.99696 * 21 19 17 23 23 H 1.48496 * 109.47523 * 210.00242 * 21 19 17 24 24 H 1.48504 * 109.46837 * 330.00558 * 21 19 17 25 25 C 1.44582 * 122.70852 * 317.86454 * 12 11 10 26 26 C 1.47095 * 108.51525 * 242.31034 * 2 1 3 27 27 H 1.08994 * 109.47017 * 51.49175 * 1 2 3 28 28 H 1.09002 * 109.46970 * 171.49728 * 1 2 3 29 29 H 1.09001 * 109.47135 * 291.49378 * 1 2 3 30 30 H 1.07997 * 120.00000 * 359.97438 * 4 3 2 31 31 H 1.07994 * 120.00127 * 180.20441 * 5 4 3 32 32 H 1.08001 * 120.00026 * 179.78494 * 6 5 4 33 33 H 1.08001 * 119.99725 * 179.97438 * 7 6 5 34 34 H 1.08006 * 120.00317 * 179.97438 * 8 7 6 35 35 H 1.08995 * 109.49195 * 156.05532 * 9 2 1 36 36 H 1.08999 * 109.48749 * 276.11823 * 9 2 1 37 37 H 1.08994 * 109.44520 * 331.90368 * 10 9 2 38 38 H 1.09007 * 109.30745 * 212.14505 * 10 9 2 39 39 H 1.08991 * 108.94871 * 198.72878 * 11 10 9 40 40 H 1.09009 * 108.87661 * 80.05060 * 11 10 9 41 41 H 1.08998 * 109.47271 * 300.00591 * 15 13 12 42 42 H 1.09004 * 109.46804 * 59.99753 * 15 13 12 43 43 H 1.09003 * 109.47005 * 300.00003 * 16 15 13 44 44 H 1.08990 * 109.47223 * 60.00013 * 16 15 13 45 45 H 0.97005 * 120.00277 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.45187 * 330.68697 * 25 12 11 47 47 H 1.09000 * 109.42424 * 210.75529 * 25 12 11 48 48 H 1.08997 * 109.32513 * 61.96414 * 26 2 1 49 49 H 1.09002 * 109.32780 * 181.61898 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0069 1.4296 0.0000 4 6 3.3563 1.7081 -0.1128 5 6 3.7933 3.0195 -0.1168 6 6 2.8819 4.0522 0.0007 7 6 1.5331 3.7735 0.1183 8 6 1.0957 2.4622 0.1189 9 6 2.0145 -0.6722 1.2811 10 6 1.0785 -1.8034 1.6352 11 6 1.5865 -3.1191 1.0181 12 7 2.1057 -2.9277 -0.3503 13 6 3.2429 -3.5585 -0.7040 14 8 3.6912 -3.4189 -1.8223 15 6 3.9577 -4.4372 0.2900 16 6 5.2097 -5.0290 -0.3603 17 6 5.9241 -5.9082 0.6335 18 1 5.5252 -6.0322 1.6295 19 6 7.0875 -6.5537 0.2717 20 7 7.7112 -7.3206 1.1391 21 14 7.7779 -6.3389 -1.4508 22 1 8.7074 -5.1809 -1.4706 23 1 8.5101 -7.5683 -1.8475 24 1 6.6648 -6.0964 -2.4034 25 6 1.4441 -2.0918 -1.3271 26 6 1.9971 -0.6481 -1.2351 27 1 -0.3633 0.6398 -0.8041 28 1 -0.3633 -1.0164 -0.1520 29 1 -0.3633 0.3765 0.9562 30 1 4.0687 0.9012 -0.2005 31 1 4.8471 3.2372 -0.2083 32 1 3.2237 5.0767 0.0010 33 1 0.8210 4.5803 0.2106 34 1 0.0418 2.2445 0.2112 35 1 3.0204 -1.0632 1.1287 36 1 2.0261 0.0561 2.0919 37 1 0.0826 -1.5844 1.2501 38 1 1.0321 -1.9069 2.7194 39 1 0.7662 -3.8361 0.9884 40 1 2.3830 -3.5187 1.6460 41 1 4.2445 -3.8445 1.1586 42 1 3.2954 -5.2442 0.6035 43 1 4.9224 -5.6219 -1.2287 44 1 5.8720 -4.2223 -0.6742 45 1 8.5299 -7.7743 0.8846 46 1 0.3720 -2.0830 -1.1308 47 1 1.6270 -2.4875 -2.3261 48 1 1.6532 -0.0745 -2.0957 49 1 3.0866 -0.6811 -1.2354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360595788.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:13:56 Heat of formation + Delta-G solvation = -29.271780 kcal Electronic energy + Delta-G solvation = -27076.642724 eV Core-core repulsion = 23581.598257 eV Total energy + Delta-G solvation = -3495.044467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03402 -40.51967 -38.69497 -35.89701 -35.62124 -33.78336 -33.18405 -31.95899 -31.30153 -28.94629 -28.12469 -27.31363 -26.07457 -23.78647 -23.13900 -22.60411 -22.19230 -19.71233 -19.61034 -19.08079 -18.23244 -17.64368 -17.07061 -16.69464 -16.37450 -16.17933 -15.93313 -15.83779 -15.26245 -15.17738 -14.79202 -14.58085 -14.41792 -14.27155 -14.10671 -13.74789 -13.55011 -13.42932 -13.10628 -12.88599 -12.80327 -12.55131 -12.46539 -12.24273 -12.10589 -12.08486 -11.98589 -11.80035 -11.61183 -11.51247 -11.39117 -11.19056 -11.03735 -10.80053 -10.64077 -9.80085 -9.68891 -9.45037 -8.33438 -6.36006 0.48756 0.51789 1.30507 1.32384 1.47840 1.67885 2.13002 2.32954 2.90530 3.02122 3.52343 3.63099 3.74526 3.98600 4.00153 4.15307 4.16250 4.20996 4.24793 4.29905 4.34919 4.39533 4.40524 4.50501 4.59731 4.68919 4.70223 4.72579 4.80886 4.86590 4.91154 4.94368 5.04942 5.12567 5.14665 5.18103 5.21811 5.28376 5.30642 5.31707 5.40848 5.42468 5.50057 5.58803 5.64931 5.65274 5.76477 5.85205 6.15544 6.21645 6.38649 6.69913 7.27980 7.29367 8.82227 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.003245 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.130688 B = 8625.498784 C = 9324.202608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.013 4.013 3 C -0.077 4.077 4 C -0.137 4.137 5 C -0.133 4.133 6 C -0.135 4.135 7 C -0.124 4.124 8 C -0.125 4.125 9 C -0.099 4.099 10 C -0.139 4.139 11 C 0.096 3.904 12 N -0.599 5.599 13 C 0.506 3.494 14 O -0.587 6.587 15 C -0.114 4.114 16 C 0.007 3.993 17 C -0.528 4.528 18 H 0.051 0.949 19 C 0.015 3.985 20 N -0.942 5.942 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.263 1.263 25 C 0.112 3.888 26 C -0.113 4.113 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.008 0.992 44 H 0.004 0.996 45 H 0.268 0.732 46 H 0.113 0.887 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.403 22.538 0.469 31.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 C -0.077 4.077 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.142 4.142 8 C -0.142 4.142 9 C -0.137 4.137 10 C -0.176 4.176 11 C -0.025 4.025 12 N -0.331 5.331 13 C 0.295 3.705 14 O -0.467 6.467 15 C -0.154 4.154 16 C -0.031 4.031 17 C -0.566 4.566 18 H 0.069 0.931 19 C -0.182 4.182 20 N -0.583 5.583 21 Si 0.761 3.239 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.010 4.010 26 C -0.152 4.152 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.142 0.858 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.027 0.973 44 H 0.022 0.978 45 H 0.077 0.923 46 H 0.131 0.869 47 H 0.077 0.923 48 H 0.094 0.906 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -21.067 22.510 -0.075 30.830 hybrid contribution 1.478 -0.288 -0.711 1.665 sum -19.589 22.222 -0.786 29.634 Atomic orbital electron populations 1.22347 0.92393 1.02988 1.03063 1.18344 0.97641 0.90524 0.94765 1.20116 0.93062 0.95722 0.98833 1.21105 0.96088 0.96723 1.01616 1.21342 1.00437 0.92901 1.00417 1.21419 0.93764 0.99613 1.00482 1.21507 0.96024 0.97299 0.99321 1.21477 1.00595 0.92022 1.00114 1.21100 0.98812 0.97602 0.96142 1.22107 1.01094 0.92295 1.02120 1.22320 1.00487 0.99162 0.80566 1.47815 1.24287 1.46792 1.14245 1.21258 0.80889 0.80005 0.88300 1.90621 1.66786 1.65267 1.24034 1.21510 0.97408 0.98735 0.97743 1.19201 0.93603 0.94880 0.95383 1.21414 1.08303 1.27487 0.99369 0.93065 1.25770 0.97129 0.94495 1.00841 1.70013 1.19139 1.32265 1.36855 0.85866 0.78970 0.78010 0.81092 1.19511 1.20099 1.18772 1.21618 0.98091 0.89133 0.92188 1.21160 0.99784 0.96028 0.98181 0.91583 0.90258 0.90597 0.88221 0.85784 0.84459 0.83777 0.83393 0.94362 0.91421 0.87630 0.88786 0.89494 0.90125 0.88592 0.88170 0.97340 0.97798 0.92335 0.86886 0.92296 0.90577 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 5.41 71.98 0.39 -1.24 16 2 C -0.01 -0.22 0.49 -54.90 -0.03 -0.25 16 3 C -0.08 -1.50 4.39 -19.86 -0.09 -1.58 16 4 C -0.14 -3.17 8.94 22.27 0.20 -2.97 16 5 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 6 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 7 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 8 C -0.12 -1.93 8.90 22.27 0.20 -1.73 16 9 C -0.10 -1.82 4.48 29.81 0.13 -1.69 16 10 C -0.14 -1.89 5.47 30.27 0.17 -1.72 16 11 C 0.10 1.80 5.95 86.49 0.51 2.31 16 12 N -0.60 -15.77 2.23 -818.16 -1.83 -17.60 16 13 C 0.51 18.85 7.62 87.66 0.67 19.51 16 14 O -0.59 -26.94 15.41 -3.05 -0.05 -26.99 16 15 C -0.11 -4.52 3.96 29.85 0.12 -4.40 16 16 C 0.01 0.38 3.33 29.85 0.10 0.47 16 17 C -0.53 -31.02 9.66 25.60 0.25 -30.77 16 18 H 0.05 3.15 7.99 -2.91 -0.02 3.12 16 19 C 0.02 0.93 5.47 84.66 0.46 1.40 16 20 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 21 Si 0.94 47.76 27.47 68.60 1.88 49.64 16 22 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.26 -13.45 6.54 99.48 0.65 -12.80 16 25 C 0.11 2.56 5.26 87.37 0.46 3.02 16 26 C -0.11 -2.54 4.14 29.40 0.12 -2.42 16 27 H 0.07 0.65 7.17 -2.39 -0.02 0.63 16 28 H 0.08 0.72 4.08 -2.39 -0.01 0.71 16 29 H 0.08 0.63 7.47 -2.39 -0.02 0.61 16 30 H 0.10 2.63 7.31 -2.91 -0.02 2.61 16 31 H 0.12 2.26 8.06 -2.91 -0.02 2.23 16 32 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.15 1.56 5.84 -2.91 -0.02 1.54 16 35 H 0.04 0.95 7.48 -2.39 -0.02 0.93 16 36 H 0.07 1.21 7.84 -2.39 -0.02 1.19 16 37 H 0.11 1.01 4.49 -2.39 -0.01 0.99 16 38 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.68 5.82 -2.38 -0.01 1.67 16 41 H 0.10 3.53 7.41 -2.39 -0.02 3.51 16 42 H 0.10 3.60 8.03 -2.38 -0.02 3.59 16 43 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 44 H 0.00 0.20 7.53 -2.39 -0.02 0.18 16 45 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 46 H 0.11 1.73 5.61 -2.39 -0.01 1.72 16 47 H 0.06 1.64 7.30 -2.39 -0.02 1.63 16 48 H 0.08 1.60 8.11 -2.39 -0.02 1.58 16 49 H 0.03 1.00 7.15 -2.39 -0.02 0.98 16 Total: -1.00 -75.98 365.97 5.52 -70.46 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.88 Total: 11.94 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.33 Total: -28.17 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -1.53 Total: -76.89 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.05 Total: -26.99 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.88 Total: 49.64 kcal Total: -75.98 5.52 -70.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360595788.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.187 kcal (2) G-P(sol) polarization free energy of solvation -75.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds