Wall clock time and date at job start Fri Apr 10 2020 23:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46980 * 2 1 4 4 C 1.38236 * 120.00313 * 90.00246 * 3 2 1 5 5 C 1.38232 * 120.00207 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.00014 * 359.94773 * 5 4 3 7 7 C 1.50694 * 119.99997 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47152 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47163 * 239.99692 * 7 6 5 10 10 C 1.53007 * 109.47029 * 120.00249 * 7 6 5 11 11 C 1.50695 * 109.47018 * 185.00079 * 10 7 6 12 12 O 1.21287 * 120.00443 * 359.97438 * 11 10 7 13 13 N 1.34780 * 120.00134 * 180.02562 * 11 10 7 14 14 C 1.46503 * 120.00087 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46869 * 178.27134 * 14 13 11 16 16 C 1.50703 * 115.55055 * 65.14492 * 15 14 13 17 17 H 1.08001 * 119.99824 * 265.40476 * 16 15 14 18 18 C 1.37876 * 120.00196 * 85.40049 * 16 15 14 19 19 N 1.31514 * 119.99907 * 353.55292 * 18 16 15 20 20 Si 1.86795 * 119.99754 * 173.55403 * 18 16 15 21 21 H 1.48492 * 109.47758 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47255 * 120.00520 * 20 18 16 23 23 H 1.48508 * 109.46875 * 240.00031 * 20 18 16 24 24 C 1.52998 * 117.50259 * 279.47200 * 15 14 13 25 25 C 1.53004 * 117.49821 * 210.81175 * 15 14 13 26 26 C 1.38239 * 119.99668 * 0.28222 * 6 5 4 27 27 C 1.38235 * 119.99673 * 269.97702 * 3 2 1 28 28 H 1.09003 * 109.46920 * 60.00366 * 1 2 3 29 29 H 1.09003 * 109.47393 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47250 * 300.00597 * 1 2 3 31 31 H 1.08993 * 109.47024 * 239.99686 * 2 1 3 32 32 H 1.09003 * 109.46920 * 119.99634 * 2 1 3 33 33 H 1.08003 * 119.99694 * 359.96819 * 4 3 2 34 34 H 1.07991 * 120.00410 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47167 * 300.00319 * 9 7 6 36 36 H 1.09003 * 109.46464 * 60.00281 * 9 7 6 37 37 H 1.08994 * 109.47295 * 179.97438 * 9 7 6 38 38 H 1.08996 * 109.46992 * 304.99499 * 10 7 6 39 39 H 1.08999 * 109.46975 * 64.99914 * 10 7 6 40 40 H 0.96999 * 119.99540 * 359.97438 * 13 11 10 41 41 H 1.09002 * 109.47164 * 298.27219 * 14 13 11 42 42 H 1.08995 * 109.46971 * 58.27207 * 14 13 11 43 43 H 0.96999 * 119.99968 * 185.05240 * 19 18 16 44 44 H 1.09008 * 117.49771 * 0.02562 * 24 15 14 45 45 H 1.08994 * 117.50110 * 145.02174 * 24 15 14 46 46 H 1.08998 * 117.49741 * 214.97951 * 25 15 14 47 47 H 1.08996 * 117.49581 * 359.97438 * 25 15 14 48 48 H 1.08000 * 119.99812 * 179.73078 * 26 6 5 49 49 H 1.08000 * 120.00362 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7230 3.3760 1.1971 6 6 2.9539 4.0275 -0.0001 7 6 3.4561 5.4482 -0.0001 8 1 3.5773 5.7908 1.0275 9 6 2.4486 6.3454 -0.7220 10 6 4.8042 5.5126 -0.7210 11 6 5.3646 6.9074 -0.6146 12 8 4.7465 7.7658 -0.0212 13 7 6.5523 7.2014 -1.1798 14 6 7.0969 8.5576 -1.0769 15 6 8.4644 8.6113 -1.7609 16 6 8.4559 8.3796 -3.2500 17 1 8.6342 7.3898 -3.6435 18 6 8.2206 9.4313 -4.1100 19 7 7.8787 10.6078 -3.6319 20 14 8.3873 9.1850 -5.9541 21 1 8.7790 7.7800 -6.2326 22 1 7.0881 9.4758 -6.6118 23 1 9.4269 10.1036 -6.4841 24 6 9.6695 8.0945 -0.9725 25 6 9.4940 9.5972 -1.2052 26 6 2.7189 3.3773 -1.1973 27 6 2.2631 2.0722 -1.1972 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0823 1.5635 2.1325 34 1 2.9026 3.8853 2.1323 35 1 2.3279 6.0026 -1.7496 36 1 1.4882 6.2995 -0.2085 37 1 2.8117 7.3731 -0.7216 38 1 5.4961 4.8070 -0.2611 39 1 4.6673 5.2551 -1.7712 40 1 7.0465 6.5150 -1.6548 41 1 6.4193 9.2591 -1.5637 42 1 7.2053 8.8268 -0.0263 43 1 7.6419 11.3273 -4.2377 44 1 9.4879 7.7158 0.0335 45 1 10.4562 7.5873 -1.5308 46 1 10.1655 10.0779 -1.9166 47 1 9.1969 10.2079 -0.3526 48 1 2.8951 3.8878 -2.1326 49 1 2.0839 1.5629 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431136905.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:45 Heat of formation + Delta-G solvation = -33.742056 kcal Electronic energy + Delta-G solvation = -25547.678815 eV Core-core repulsion = 22052.440502 eV Total energy + Delta-G solvation = -3495.238312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05687 -40.20631 -38.53248 -36.63462 -34.89116 -33.97209 -33.86219 -31.76430 -30.04061 -29.10530 -27.76708 -26.71505 -25.06172 -23.65310 -23.00431 -22.58790 -21.36853 -21.19598 -20.46510 -18.39091 -17.89719 -16.87948 -16.87153 -16.61243 -16.37387 -16.20825 -15.86918 -15.53771 -14.94000 -14.78785 -14.54932 -14.50185 -14.38144 -14.18491 -13.97647 -13.68616 -13.52249 -13.41954 -13.02924 -12.93031 -12.84987 -12.69645 -12.33115 -12.30856 -12.23939 -12.06248 -12.01200 -11.78950 -11.56391 -11.47695 -11.46093 -10.85946 -10.72553 -10.45953 -10.03817 -9.76594 -9.75506 -9.35142 -8.10174 -6.23232 0.46912 0.56790 1.40787 1.44696 1.53926 1.80691 2.40142 2.46002 2.89590 3.18274 3.48880 3.73729 3.81351 3.96567 4.07422 4.14508 4.21594 4.22824 4.31046 4.39615 4.53954 4.55600 4.56088 4.64428 4.65550 4.69264 4.71099 4.74089 4.76296 4.87757 4.98391 5.00289 5.09612 5.10727 5.12359 5.20881 5.22024 5.26920 5.31264 5.38618 5.42407 5.59275 5.60796 5.62217 5.72881 5.79000 5.79193 5.82527 6.18627 6.36803 6.81616 6.86765 7.45487 7.47271 8.97604 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018285 B = 0.002518 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.974397 B =11115.547255 C =11702.019794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.124 4.124 6 C -0.085 4.085 7 C -0.027 4.027 8 H 0.071 0.929 9 C -0.144 4.144 10 C -0.122 4.122 11 C 0.501 3.499 12 O -0.590 6.590 13 N -0.702 5.702 14 C 0.180 3.820 15 C 0.005 3.995 16 C -0.502 4.502 17 H 0.065 0.935 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.260 1.260 22 H -0.287 1.287 23 H -0.286 1.286 24 C -0.176 4.176 25 C -0.162 4.162 26 C -0.118 4.118 27 C -0.124 4.124 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.410 0.590 41 H 0.027 0.973 42 H 0.033 0.967 43 H 0.258 0.742 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.127 0.873 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 -21.288 6.743 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.141 4.141 5 C -0.142 4.142 6 C -0.085 4.085 7 C -0.046 4.046 8 H 0.090 0.910 9 C -0.201 4.201 10 C -0.161 4.161 11 C 0.289 3.711 12 O -0.472 6.472 13 N -0.351 5.351 14 C 0.055 3.945 15 C 0.004 3.996 16 C -0.539 4.539 17 H 0.083 0.917 18 C -0.178 4.178 19 N -0.547 5.547 20 Si 0.776 3.224 21 H -0.184 1.184 22 H -0.214 1.214 23 H -0.212 1.212 24 C -0.213 4.213 25 C -0.200 4.200 26 C -0.136 4.136 27 C -0.141 4.141 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.245 0.755 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.145 0.855 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.686 -20.476 7.094 24.620 hybrid contribution 0.378 0.679 -1.218 1.445 sum -11.308 -19.797 5.875 23.544 Atomic orbital electron populations 1.21738 0.94427 1.02302 1.01783 1.20573 0.96357 0.91554 1.03566 1.20175 0.98907 0.97233 0.93037 1.21217 0.99859 0.94587 0.98400 1.21241 0.99921 0.95328 0.97698 1.19805 0.99950 0.94877 0.93873 1.19736 0.93095 0.91572 1.00190 0.91020 1.21886 0.98409 0.99786 1.00066 1.21735 0.97786 0.92361 1.04235 1.21305 0.80462 0.91503 0.77830 1.90613 1.60041 1.51451 1.45107 1.45922 1.21106 1.12964 1.55136 1.20509 0.94982 0.82832 0.96145 1.19088 0.86316 1.00894 0.93301 1.20690 1.49232 0.94587 0.89434 0.91709 1.25722 0.94590 0.94907 1.02550 1.70115 1.45463 1.03261 1.35826 0.85635 0.77264 0.78588 0.80916 1.18388 1.21351 1.21225 1.23004 1.02036 0.95997 1.00242 1.22432 1.04627 0.91809 1.01113 1.21155 0.99559 0.95117 0.97800 1.21241 0.99840 0.94671 0.98389 0.93079 0.91194 0.93018 0.90351 0.90289 0.84675 0.85601 0.92219 0.92514 0.93136 0.87018 0.87356 0.75488 0.95427 0.94866 0.93274 0.89333 0.89507 0.91864 0.91252 0.85504 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 71.98 0.71 -0.85 16 2 C -0.08 -0.97 6.06 29.85 0.18 -0.79 16 3 C -0.09 -1.53 5.13 -19.87 -0.10 -1.64 16 4 C -0.12 -2.11 9.70 22.27 0.22 -1.90 16 5 C -0.12 -2.46 9.67 22.27 0.22 -2.25 16 6 C -0.08 -1.83 4.78 -19.87 -0.09 -1.92 16 7 C -0.03 -0.68 2.21 -11.54 -0.03 -0.70 16 8 H 0.07 1.97 7.69 -2.39 -0.02 1.95 16 9 C -0.14 -3.92 8.74 71.98 0.63 -3.29 16 10 C -0.12 -3.06 4.92 29.85 0.15 -2.92 16 11 C 0.50 17.82 7.55 87.65 0.66 18.48 16 12 O -0.59 -25.52 13.97 -3.05 -0.04 -25.56 16 13 N -0.70 -26.37 5.48 -463.05 -2.54 -28.90 16 14 C 0.18 8.23 5.50 86.38 0.48 8.71 16 15 C 0.00 0.22 1.38 -52.93 -0.07 0.15 16 16 C -0.50 -25.37 8.63 25.60 0.22 -25.15 16 17 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 18 C 0.02 1.21 5.39 84.65 0.46 1.66 16 19 N -0.91 -51.53 12.91 21.45 0.28 -51.25 16 20 Si 0.95 41.99 29.55 68.60 2.03 44.02 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 C -0.18 -6.93 9.96 30.62 0.30 -6.62 16 25 C -0.16 -7.38 9.42 30.62 0.29 -7.09 16 26 C -0.12 -2.33 8.76 22.27 0.20 -2.14 16 27 C -0.12 -2.15 9.70 22.27 0.22 -1.93 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 32 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 33 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.13 2.28 7.95 -2.92 -0.02 2.25 16 35 H 0.06 1.46 7.37 -2.39 -0.02 1.44 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.71 5.95 -2.39 -0.01 1.70 16 38 H 0.11 2.35 8.14 -2.39 -0.02 2.34 16 39 H 0.11 2.40 7.58 -2.39 -0.02 2.38 16 40 H 0.41 13.64 8.37 -92.71 -0.78 12.87 16 41 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.03 1.51 8.09 -2.39 -0.02 1.49 16 43 H 0.26 14.13 8.32 -92.71 -0.77 13.35 16 44 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 45 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 47 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 48 H 0.13 2.30 7.16 -2.91 -0.02 2.28 16 49 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -63.20 400.64 4.49 -58.71 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.14 Total: 33.17 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 4.62 Total: -30.19 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.26 Total: -80.15 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.04 Total: -25.56 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -63.20 4.49 -58.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431136905.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.971 kcal (2) G-P(sol) polarization free energy of solvation -63.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds