Wall clock time and date at job start Fri Apr 10 2020 23:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46976 * 2 1 4 4 C 1.53000 * 109.47120 * 240.00176 * 2 1 3 5 5 C 1.53009 * 109.46941 * 299.99942 * 4 2 1 6 6 C 1.52998 * 109.46802 * 300.00196 * 5 4 2 7 7 C 1.53000 * 109.47496 * 59.99771 * 6 5 4 8 8 C 1.52995 * 109.47201 * 299.99825 * 7 6 5 9 9 H 1.08994 * 109.47510 * 299.99706 * 8 7 6 10 10 C 1.53000 * 109.46860 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.47240 * 65.00287 * 10 8 7 12 12 O 1.21280 * 119.99924 * 359.97438 * 11 10 8 13 13 N 1.34779 * 119.99764 * 179.72400 * 11 10 8 14 14 C 1.39234 * 119.99391 * 175.98319 * 13 11 10 15 15 C 1.39483 * 119.83169 * 215.01121 * 14 13 11 16 16 C 1.36375 * 120.17133 * 179.72143 * 15 14 13 17 17 C 1.40869 * 119.82359 * 0.53516 * 16 15 14 18 18 C 1.41154 * 120.16259 * 179.72236 * 17 16 15 19 19 H 1.08000 * 120.00215 * 214.79765 * 18 17 16 20 20 C 1.39908 * 119.99907 * 34.79675 * 18 17 16 21 21 N 1.30872 * 120.00112 * 355.56147 * 20 18 17 22 22 Si 1.86804 * 119.99769 * 175.55886 * 20 18 17 23 23 H 1.48500 * 109.46957 * 90.00422 * 22 20 18 24 24 H 1.48501 * 109.46765 * 210.00114 * 22 20 18 25 25 H 1.48500 * 109.47083 * 330.00179 * 22 20 18 26 26 C 1.40867 * 119.67400 * 359.74109 * 17 16 15 27 27 C 1.36373 * 119.82831 * 359.97438 * 26 17 16 28 28 H 1.09007 * 109.47074 * 299.99652 * 1 2 3 29 29 H 1.08998 * 109.47445 * 60.00059 * 1 2 3 30 30 H 1.08999 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47126 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47448 * 299.99964 * 3 2 1 33 33 H 1.09000 * 109.47558 * 60.00163 * 3 2 1 34 34 H 1.09000 * 109.47199 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47153 * 59.99586 * 4 2 1 36 36 H 1.09000 * 109.46968 * 180.02562 * 5 4 2 37 37 H 1.08999 * 109.47001 * 59.99550 * 5 4 2 38 38 H 1.09000 * 109.47280 * 299.99724 * 6 5 4 39 39 H 1.08999 * 109.46715 * 180.02562 * 6 5 4 40 40 H 1.08999 * 109.47096 * 179.97438 * 7 6 5 41 41 H 1.09001 * 109.46502 * 60.00383 * 7 6 5 42 42 H 1.09000 * 109.47471 * 304.99802 * 10 8 7 43 43 H 1.09003 * 109.47097 * 185.00379 * 10 8 7 44 44 H 0.96995 * 120.00168 * 355.97665 * 13 11 10 45 45 H 1.08005 * 119.91112 * 359.97438 * 15 14 13 46 46 H 1.07997 * 120.08897 * 180.25349 * 16 15 14 47 47 H 0.97001 * 119.99930 * 179.97438 * 21 20 18 48 48 H 1.08000 * 120.08688 * 179.97438 * 26 17 16 49 49 H 1.08005 * 119.91520 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5299 -2.1638 -1.2493 6 6 2.0399 -2.8849 0.0000 7 6 1.5300 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2493 9 1 3.1300 -0.7212 1.2493 10 6 1.5295 0.0001 2.4982 11 6 2.1300 -0.6350 3.7259 12 8 2.8909 -1.5726 3.6130 13 7 1.8253 -0.1577 4.9490 14 6 2.3129 -0.7958 6.0864 15 6 1.5317 -0.8492 7.2407 16 6 2.0001 -1.4773 8.3569 17 6 3.2811 -2.0632 8.3456 18 6 3.7754 -2.7100 9.4987 19 1 4.8281 -2.6620 9.7354 20 6 2.9017 -3.4132 10.3351 21 7 1.6149 -3.3993 10.0971 22 14 3.5720 -4.3721 11.7914 23 1 3.6121 -3.4923 12.9871 24 1 2.6928 -5.5375 12.0636 25 1 4.9438 -4.8486 11.4812 26 6 4.0666 -2.0001 7.1779 27 6 3.5822 -1.3736 6.0676 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7216 -1.2490 35 1 1.6766 -0.2074 -2.1392 36 1 1.8936 -2.6777 -2.1390 37 1 0.4399 -2.1638 -1.2492 38 1 3.1299 -2.8850 0.0000 39 1 1.6770 -3.9127 -0.0002 40 1 1.8930 -2.6778 2.1392 41 1 0.4400 -2.1638 1.2493 42 1 0.4432 -0.0767 2.5437 43 1 1.8179 1.0504 2.4545 44 1 1.2665 0.6302 5.0368 45 1 0.5516 -0.3955 7.2492 46 1 1.3925 -1.5214 9.2486 47 1 1.0092 -3.8871 10.6768 48 1 5.0498 -2.4467 7.1619 49 1 4.1833 -1.3241 5.1717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000502313847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:14:46 Heat of formation + Delta-G solvation = -62.565010 kcal Electronic energy + Delta-G solvation = -26460.966851 eV Core-core repulsion = 22964.478681 eV Total energy + Delta-G solvation = -3496.488169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60481 -40.35641 -38.89926 -36.13644 -34.72886 -34.29495 -33.21451 -31.49167 -30.85307 -28.90421 -28.10509 -27.05367 -26.18432 -23.65629 -23.09572 -22.37822 -21.78071 -20.91152 -19.27688 -19.03992 -18.30964 -17.75549 -17.01571 -16.49721 -16.10275 -15.76303 -15.71923 -15.36166 -15.09929 -14.96289 -14.51699 -14.48165 -14.00318 -13.94805 -13.74619 -13.61658 -13.40554 -13.23079 -12.88025 -12.81303 -12.74053 -12.67231 -12.47493 -12.41371 -12.23280 -12.07359 -11.87606 -11.77797 -11.55998 -11.39612 -11.19284 -11.00841 -10.91993 -10.74955 -10.69312 -10.29994 -9.46663 -8.71119 -8.50556 -6.33292 0.81100 1.13432 1.38484 1.44847 1.52828 1.87703 2.23414 2.43075 2.80702 3.64468 3.69617 3.75503 3.81088 4.04463 4.18719 4.24940 4.38363 4.41079 4.46657 4.51376 4.51998 4.59425 4.65834 4.72893 4.83541 4.87028 4.93100 4.94683 5.04645 5.11266 5.14680 5.15123 5.15704 5.22990 5.28544 5.29517 5.32268 5.36337 5.37113 5.45349 5.47673 5.59691 5.64064 5.69641 5.76347 5.92515 6.04016 6.15212 6.39610 6.67595 6.79831 6.96464 7.00584 7.49050 8.42030 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.027985 B = 0.002560 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.296483 B =10935.929734 C =11273.685084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.052 4.052 9 H 0.051 0.949 10 C -0.127 4.127 11 C 0.494 3.506 12 O -0.569 6.569 13 N -0.650 5.650 14 C 0.025 3.975 15 C -0.121 4.121 16 C -0.159 4.159 17 C 0.066 3.934 18 C -0.499 4.499 19 H 0.071 0.929 20 C 0.027 3.973 21 N -0.842 5.842 22 Si 0.988 3.012 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.264 1.264 26 C -0.222 4.222 27 C -0.098 4.098 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.417 0.583 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.284 0.716 48 H 0.093 0.907 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 8.962 -19.576 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.054 4.054 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.071 4.071 9 H 0.070 0.930 10 C -0.166 4.166 11 C 0.283 3.717 12 O -0.448 6.448 13 N -0.295 5.295 14 C -0.069 4.069 15 C -0.141 4.141 16 C -0.179 4.179 17 C 0.064 3.936 18 C -0.530 4.530 19 H 0.089 0.911 20 C -0.184 4.184 21 N -0.470 5.470 22 Si 0.809 3.191 23 H -0.183 1.183 24 H -0.194 1.194 25 H -0.188 1.188 26 C -0.242 4.242 27 C -0.118 4.118 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.254 0.746 45 H 0.142 0.858 46 H 0.136 0.864 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.587 8.229 -19.613 21.991 hybrid contribution 0.334 -0.552 1.051 1.233 sum -5.253 7.677 -18.562 20.762 Atomic orbital electron populations 1.22037 0.93713 1.02155 1.02501 1.20498 0.96381 0.95115 0.93430 1.21961 1.00711 0.94871 1.02707 1.21581 1.00094 0.95254 0.97422 1.21566 1.01266 0.95716 0.96791 1.21481 0.99972 0.98842 0.95165 1.21684 1.00411 0.95867 0.97881 1.20817 0.99334 0.94182 0.92780 0.92998 1.21917 1.02872 1.01856 0.89987 1.21658 0.81317 0.83259 0.85418 1.90648 1.37079 1.30328 1.86744 1.43055 1.51928 1.30674 1.03867 1.17352 0.94017 1.07244 0.88296 1.20580 0.98549 1.01892 0.93109 1.21182 0.98216 0.99942 0.98578 1.18021 0.92932 0.90158 0.92517 1.19709 0.95747 1.30211 1.07349 0.91087 1.26734 0.94668 0.96575 1.00462 1.69826 1.04159 1.36109 1.36903 0.85112 0.78930 0.77887 0.77175 1.18315 1.19361 1.18783 1.20927 1.01258 1.08146 0.93853 1.20501 0.94659 0.99549 0.97095 0.91813 0.91656 0.92470 0.93408 0.91460 0.91540 0.92946 0.90530 0.91650 0.90994 0.93569 0.92594 0.93841 0.91495 0.86692 0.86238 0.74605 0.85760 0.86356 0.90501 0.88888 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 7.43 71.98 0.53 -1.33 16 2 C -0.05 -0.82 0.54 -52.18 -0.03 -0.85 16 3 C -0.15 -1.87 8.13 71.98 0.59 -1.28 16 4 C -0.11 -1.60 4.73 30.60 0.14 -1.45 16 5 C -0.12 -1.89 5.65 30.60 0.17 -1.71 16 6 C -0.12 -2.58 5.92 30.59 0.18 -2.40 16 7 C -0.12 -3.02 4.67 30.59 0.14 -2.88 16 8 C -0.05 -1.13 1.14 -10.79 -0.01 -1.14 16 9 H 0.05 1.39 7.96 -2.39 -0.02 1.37 16 10 C -0.13 -2.59 4.45 29.85 0.13 -2.46 16 11 C 0.49 15.92 7.38 87.66 0.65 16.57 16 12 O -0.57 -23.81 11.39 -3.03 -0.03 -23.84 16 13 N -0.65 -21.25 5.30 -303.11 -1.61 -22.86 16 14 C 0.02 1.08 6.31 38.57 0.24 1.33 16 15 C -0.12 -5.49 9.90 22.14 0.22 -5.27 16 16 C -0.16 -8.45 8.61 22.48 0.19 -8.25 16 17 C 0.07 3.72 5.55 -21.28 -0.12 3.61 16 18 C -0.50 -28.05 9.02 23.39 0.21 -27.84 16 19 H 0.07 3.87 7.85 -2.91 -0.02 3.84 16 20 C 0.03 1.42 5.42 85.24 0.46 1.89 16 21 N -0.84 -45.15 10.60 21.82 0.23 -44.92 16 22 Si 0.99 39.86 29.56 68.60 2.03 41.89 16 23 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 24 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 C -0.22 -11.88 9.74 22.48 0.22 -11.66 16 27 C -0.10 -4.83 8.61 22.13 0.19 -4.64 16 28 H 0.06 0.72 6.54 -2.38 -0.02 0.70 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.80 4.81 -2.39 -0.01 0.79 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.75 6.32 -2.39 -0.02 0.73 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.06 6.43 -2.39 -0.02 1.05 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.04 1.46 5.95 -2.39 -0.01 1.45 16 41 H 0.07 1.49 6.43 -2.39 -0.02 1.48 16 42 H 0.12 1.87 6.71 -2.39 -0.02 1.86 16 43 H 0.12 1.82 6.17 -2.39 -0.01 1.81 16 44 H 0.42 9.90 8.82 -92.71 -0.82 9.08 16 45 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 46 H 0.12 6.53 6.13 -2.91 -0.02 6.51 16 47 H 0.28 13.83 8.30 -92.71 -0.77 13.07 16 48 H 0.09 4.82 8.06 -2.91 -0.02 4.80 16 49 H 0.11 5.22 6.22 -2.91 -0.02 5.20 16 Total: -1.00 -67.62 367.26 4.87 -62.75 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: 0.14 Total: 36.77 kcal Atomic # 6 Polarization: -53.90 SS G_CDS: 4.12 Total: -49.78 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -1.38 Total: -67.78 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.03 Total: -23.84 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -67.62 4.87 -62.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000502313847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.181 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds