Wall clock time and date at job start Fri Apr 10 2020 23:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38176 * 120.01247 * 2 1 4 4 C 1.38437 * 120.02972 * 180.02562 * 3 2 1 5 5 F 1.35096 * 119.97147 * 179.97438 * 4 3 2 6 6 C 1.38481 * 120.05837 * 359.69842 * 4 3 2 7 7 C 1.38123 * 120.02922 * 0.55596 * 6 4 3 8 8 C 1.38686 * 120.01895 * 179.97438 * 2 1 3 9 9 O 1.35943 * 120.02914 * 0.02562 * 8 2 1 10 10 S 1.52198 * 114.00151 * 95.34621 * 9 8 2 11 11 O 1.42104 * 104.27577 * 191.34444 * 10 9 8 12 12 O 1.42101 * 104.28043 * 319.20555 * 10 9 8 13 13 C 1.81401 * 104.44721 * 75.27825 * 10 9 8 14 14 C 1.52998 * 109.47415 * 179.04525 * 13 10 9 15 15 C 1.53007 * 109.46868 * 299.99948 * 14 13 10 16 16 C 1.53001 * 109.46917 * 59.99825 * 14 13 10 17 17 C 1.50698 * 109.47457 * 180.02562 * 14 13 10 18 18 H 1.07996 * 119.99759 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99985 * 180.02562 * 17 14 13 20 20 N 1.31512 * 120.00018 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99686 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47385 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47204 * 119.99825 * 21 19 17 24 24 H 1.48502 * 109.46682 * 239.99393 * 21 19 17 25 25 H 1.09001 * 109.46914 * 265.91950 * 1 2 3 26 26 H 1.08999 * 109.46803 * 25.92197 * 1 2 3 27 27 H 1.08998 * 109.46575 * 145.92458 * 1 2 3 28 28 H 1.07998 * 119.98864 * 359.97438 * 3 2 1 29 29 H 1.07993 * 119.98198 * 180.29836 * 6 4 3 30 30 H 1.08000 * 120.01670 * 179.74643 * 7 6 4 31 31 H 1.09001 * 109.47044 * 299.04430 * 13 10 9 32 32 H 1.09007 * 109.47240 * 59.04233 * 13 10 9 33 33 H 1.08999 * 109.46783 * 60.00009 * 15 14 13 34 34 H 1.09001 * 109.46742 * 179.97438 * 15 14 13 35 35 H 1.08993 * 109.46908 * 299.99573 * 15 14 13 36 36 H 1.08994 * 109.47469 * 60.00073 * 16 14 13 37 37 H 1.09003 * 109.46841 * 180.02562 * 16 14 13 38 38 H 1.09003 * 109.47097 * 299.99845 * 16 14 13 39 39 H 0.96999 * 119.99554 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1965 0.0000 4 6 3.5825 1.1969 -0.0005 5 9 4.2571 2.3674 -0.0011 6 6 4.2765 -0.0014 0.0052 7 6 3.5881 -1.1989 -0.0001 8 6 2.2008 -1.2008 0.0005 9 8 1.5221 -2.3787 0.0005 10 16 1.3258 -2.9801 -1.3837 11 8 0.3865 -4.0270 -1.1810 12 8 1.0144 -1.8660 -2.2090 13 6 2.9514 -3.6586 -1.8171 14 6 2.8773 -4.3199 -3.1948 15 6 1.8452 -5.4490 -3.1636 16 6 2.4641 -3.2798 -4.2381 17 6 4.2275 -4.8841 -3.5545 18 1 5.0558 -4.7809 -2.8692 19 6 4.4057 -5.5311 -4.7590 20 7 3.3972 -5.6562 -5.5937 21 14 6.0794 -6.2311 -5.2045 22 1 7.0383 -5.9603 -4.1034 23 1 5.9637 -7.6970 -5.4115 24 1 6.5667 -5.5918 -6.4532 25 1 -0.3633 -0.0731 1.0251 26 1 -0.3633 0.9243 -0.4492 27 1 -0.3632 -0.8512 -0.5758 28 1 1.6582 2.1318 -0.0004 29 1 5.3564 0.0003 0.0097 30 1 4.1296 -2.1334 0.0003 31 1 3.6866 -2.8542 -1.8393 32 1 3.2458 -4.3995 -1.0737 33 1 0.8684 -5.0412 -2.9033 34 1 1.7921 -5.9198 -4.1453 35 1 2.1396 -6.1899 -2.4204 36 1 3.1993 -2.4755 -4.2603 37 1 2.4109 -3.7511 -5.2196 38 1 1.4873 -2.8722 -3.9777 39 1 3.5225 -6.1117 -6.4408 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295156550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:14:26 Heat of formation + Delta-G solvation = -127.796043 kcal Electronic energy + Delta-G solvation = -25613.083289 eV Core-core repulsion = 21756.365285 eV Total energy + Delta-G solvation = -3856.718004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.16315 -41.16183 -38.02978 -36.75198 -36.37444 -35.57318 -33.14398 -31.73776 -30.22109 -27.36475 -26.91932 -25.77809 -25.28800 -23.55460 -22.37162 -20.58364 -19.50284 -18.07877 -17.60143 -17.46647 -17.30471 -16.07894 -15.83452 -15.72812 -15.19651 -14.86938 -14.44792 -14.12181 -13.90367 -13.66275 -13.34180 -13.18162 -13.04735 -12.79467 -12.58236 -12.53899 -12.27785 -12.02002 -11.81592 -11.61486 -11.24625 -11.16155 -11.12681 -11.00167 -10.78959 -10.41615 -10.35052 -10.15431 -9.72159 -9.61075 -9.29063 -8.87939 -8.69783 -8.45257 -6.08485 -4.20636 0.26859 0.83847 1.00643 2.46229 3.11963 3.22032 3.30751 3.32747 3.89352 4.03582 4.30331 4.33043 4.35067 4.38763 4.75942 4.89566 4.93496 5.17273 5.27534 5.42604 5.47148 5.52436 5.53900 5.73382 5.75479 5.91203 5.97583 6.05130 6.25898 6.56163 6.62897 6.72793 6.83532 6.97534 7.25387 7.44121 7.63009 7.92541 8.03322 8.26765 8.77781 9.45169 10.93055 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.004816 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.717114 B = 5813.103382 C = 6885.568853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.029 4.029 3 C -0.141 4.141 4 C 0.114 3.886 5 F -0.133 7.133 6 C -0.139 4.139 7 C -0.101 4.101 8 C 0.069 3.931 9 O -0.673 6.673 10 S 2.571 3.429 11 O -0.932 6.932 12 O -0.954 6.954 13 C -0.607 4.607 14 C 0.085 3.915 15 C -0.166 4.166 16 C -0.163 4.163 17 C -0.502 4.502 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.883 5.883 21 Si 0.896 3.104 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.028 0.972 34 H 0.097 0.903 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.096 0.904 38 H 0.027 0.973 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 11.859 11.547 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.031 4.031 3 C -0.160 4.160 4 C 0.094 3.906 5 F -0.112 7.112 6 C -0.158 4.158 7 C -0.121 4.121 8 C 0.027 3.973 9 O -0.632 6.632 10 S 2.672 3.328 11 O -0.930 6.930 12 O -0.953 6.953 13 C -0.738 4.738 14 C 0.083 3.917 15 C -0.224 4.224 16 C -0.221 4.221 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.724 3.276 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.167 0.833 29 H 0.169 0.831 30 H 0.172 0.828 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.047 0.953 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.115 0.885 38 H 0.046 0.954 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.978 11.904 11.533 16.692 hybrid contribution 1.712 -0.652 -0.381 1.871 sum -0.267 11.252 11.151 15.844 Atomic orbital electron populations 1.20888 0.89297 1.04487 1.03074 1.19790 0.97566 0.90553 0.95200 1.20918 0.92170 0.98791 1.04098 1.17721 0.90072 0.81463 1.01297 1.91525 1.80231 1.45765 1.93633 1.20972 1.01490 0.90003 1.03324 1.21364 0.91913 1.00167 0.98681 1.17835 0.89749 0.81654 1.08071 1.85761 1.76410 1.41189 1.59820 1.06302 0.79160 0.75124 0.72218 1.93595 1.59491 1.57252 1.82693 1.93597 1.83907 1.50563 1.67208 1.30850 1.19570 1.11820 1.11534 1.17922 0.97581 0.92025 0.84177 1.22308 0.95678 0.99832 1.04554 1.22272 0.97533 0.97847 1.04452 1.20954 0.94039 1.36254 1.02919 0.92190 1.24936 0.96896 0.95701 0.96169 1.69805 1.30105 1.42502 1.09659 0.86470 0.83894 0.78813 0.78409 1.19832 1.20907 1.20923 0.89888 0.90018 0.90677 0.83340 0.83114 0.82758 0.86001 0.85697 0.95340 0.88456 0.94315 0.94364 0.88494 0.95428 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.60 36.01 0.35 -1.07 16 2 C -0.03 -0.38 5.40 -104.48 -0.56 -0.94 16 3 C -0.14 -1.55 9.66 -39.53 -0.38 -1.93 16 4 C 0.11 1.28 7.30 -39.42 -0.29 0.99 16 5 F -0.13 -1.47 17.27 2.25 0.04 -1.43 16 6 C -0.14 -1.51 10.02 -39.53 -0.40 -1.90 16 7 C -0.10 -1.25 8.42 -39.44 -0.33 -1.59 16 8 C 0.07 1.00 4.69 -39.23 -0.18 0.82 16 9 O -0.67 -10.97 9.28 -51.89 -0.48 -11.45 16 10 S 2.57 49.00 3.91 -107.50 -0.42 48.58 16 11 O -0.93 -20.23 15.64 -67.04 -1.05 -21.27 16 12 O -0.95 -19.07 12.88 -67.04 -0.86 -19.94 16 13 C -0.61 -11.65 4.21 37.16 0.16 -11.50 16 14 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 15 C -0.17 -4.04 7.77 37.16 0.29 -3.75 16 16 C -0.16 -3.91 7.78 37.16 0.29 -3.62 16 17 C -0.50 -12.86 8.01 -34.44 -0.28 -13.14 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 20 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 21 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.75 8.06 -51.93 -0.42 0.34 16 27 H 0.07 1.05 6.13 -51.93 -0.32 0.73 16 28 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.15 1.62 6.92 -52.49 -0.36 1.26 16 31 H 0.12 2.06 6.22 -51.92 -0.32 1.74 16 32 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 33 H 0.03 0.66 5.42 -51.93 -0.28 0.37 16 34 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 38 H 0.03 0.62 5.51 -51.93 -0.29 0.33 16 39 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 322.84 15.07 4.87 4.87 Total: -1.00 -30.46 322.84 -8.63 -39.09 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.70 Total: 3.56 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: -1.51 Total: -34.09 kcal Atomic # 7 Polarization: -23.67 SS G_CDS: 0.52 Total: -23.15 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -2.39 Total: -52.66 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 49.00 SS G_CDS: -0.42 Total: 48.58 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.46 -8.63 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295156550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.710 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds