Wall clock time and date at job start Fri Apr 10 2020 23:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38176 * 120.01247 * 2 1 4 4 C 1.38437 * 120.02972 * 180.02562 * 3 2 1 5 5 F 1.35096 * 119.97147 * 179.97438 * 4 3 2 6 6 C 1.38481 * 120.05837 * 359.69842 * 4 3 2 7 7 C 1.38123 * 120.02922 * 0.55596 * 6 4 3 8 8 C 1.38686 * 120.01895 * 179.97438 * 2 1 3 9 9 O 1.35943 * 120.02914 * 0.02562 * 8 2 1 10 10 S 1.52198 * 114.00151 * 95.34621 * 9 8 2 11 11 O 1.42104 * 104.27577 * 191.34444 * 10 9 8 12 12 O 1.42101 * 104.28043 * 319.20555 * 10 9 8 13 13 C 1.81401 * 104.44721 * 75.27825 * 10 9 8 14 14 C 1.52998 * 109.47415 * 179.04525 * 13 10 9 15 15 C 1.53007 * 109.46868 * 299.99948 * 14 13 10 16 16 C 1.53001 * 109.46917 * 59.99825 * 14 13 10 17 17 C 1.50698 * 109.47457 * 180.02562 * 14 13 10 18 18 H 1.07996 * 119.99759 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99985 * 180.02562 * 17 14 13 20 20 N 1.31512 * 120.00018 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99686 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47385 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47204 * 119.99825 * 21 19 17 24 24 H 1.48502 * 109.46682 * 239.99393 * 21 19 17 25 25 H 1.09001 * 109.46914 * 265.91950 * 1 2 3 26 26 H 1.08999 * 109.46803 * 25.92197 * 1 2 3 27 27 H 1.08998 * 109.46575 * 145.92458 * 1 2 3 28 28 H 1.07998 * 119.98864 * 359.97438 * 3 2 1 29 29 H 1.07993 * 119.98198 * 180.29836 * 6 4 3 30 30 H 1.08000 * 120.01670 * 179.74643 * 7 6 4 31 31 H 1.09001 * 109.47044 * 299.04430 * 13 10 9 32 32 H 1.09007 * 109.47240 * 59.04233 * 13 10 9 33 33 H 1.08999 * 109.46783 * 60.00009 * 15 14 13 34 34 H 1.09001 * 109.46742 * 179.97438 * 15 14 13 35 35 H 1.08993 * 109.46908 * 299.99573 * 15 14 13 36 36 H 1.08994 * 109.47469 * 60.00073 * 16 14 13 37 37 H 1.09003 * 109.46841 * 180.02562 * 16 14 13 38 38 H 1.09003 * 109.47097 * 299.99845 * 16 14 13 39 39 H 0.96999 * 119.99554 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1965 0.0000 4 6 3.5825 1.1969 -0.0005 5 9 4.2571 2.3674 -0.0011 6 6 4.2765 -0.0014 0.0052 7 6 3.5881 -1.1989 -0.0001 8 6 2.2008 -1.2008 0.0005 9 8 1.5221 -2.3787 0.0005 10 16 1.3258 -2.9801 -1.3837 11 8 0.3865 -4.0270 -1.1810 12 8 1.0144 -1.8660 -2.2090 13 6 2.9514 -3.6586 -1.8171 14 6 2.8773 -4.3199 -3.1948 15 6 1.8452 -5.4490 -3.1636 16 6 2.4641 -3.2798 -4.2381 17 6 4.2275 -4.8841 -3.5545 18 1 5.0558 -4.7809 -2.8692 19 6 4.4057 -5.5311 -4.7590 20 7 3.3972 -5.6562 -5.5937 21 14 6.0794 -6.2311 -5.2045 22 1 7.0383 -5.9603 -4.1034 23 1 5.9637 -7.6970 -5.4115 24 1 6.5667 -5.5918 -6.4532 25 1 -0.3633 -0.0731 1.0251 26 1 -0.3633 0.9243 -0.4492 27 1 -0.3632 -0.8512 -0.5758 28 1 1.6582 2.1318 -0.0004 29 1 5.3564 0.0003 0.0097 30 1 4.1296 -2.1334 0.0003 31 1 3.6866 -2.8542 -1.8393 32 1 3.2458 -4.3995 -1.0737 33 1 0.8684 -5.0412 -2.9033 34 1 1.7921 -5.9198 -4.1453 35 1 2.1396 -6.1899 -2.4204 36 1 3.1993 -2.4755 -4.2603 37 1 2.4109 -3.7511 -5.2196 38 1 1.4873 -2.8722 -3.9777 39 1 3.5225 -6.1117 -6.4408 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295156550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:14:26 Heat of formation + Delta-G solvation = -145.221026 kcal Electronic energy + Delta-G solvation = -25613.838893 eV Core-core repulsion = 21756.365285 eV Total energy + Delta-G solvation = -3857.473608 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.03135 -42.28223 -39.06527 -38.29499 -38.16526 -37.14183 -34.07203 -33.61392 -31.16499 -28.57636 -28.24219 -27.70638 -27.25619 -24.57839 -23.33623 -21.84539 -21.19943 -19.41383 -18.87704 -18.58454 -18.30258 -17.92430 -17.06621 -16.77568 -16.69132 -16.49499 -15.46447 -15.30715 -15.03611 -14.88064 -14.65257 -14.52089 -14.37584 -14.18955 -13.94887 -13.93508 -13.78926 -13.24236 -13.10115 -13.01452 -12.89568 -12.78299 -12.72732 -12.53968 -12.22000 -12.13517 -12.08382 -11.97388 -11.59024 -11.39539 -10.63594 -10.42177 -10.16150 -9.76752 -8.03189 -6.21517 -1.03245 -0.11134 -0.02723 1.15267 1.44247 1.47730 1.56718 2.21240 2.43955 2.58778 2.94757 3.02555 3.20323 3.44693 3.49756 3.71196 3.93860 3.97211 4.03231 4.13683 4.40358 4.55392 4.59722 4.64214 4.78033 4.84020 4.84251 4.91060 4.93161 4.95739 5.07090 5.09018 5.13037 5.36411 5.49473 5.65109 5.65834 5.96224 6.09652 6.32775 6.83139 7.47007 8.97234 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.004816 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.717114 B = 5813.103382 C = 6885.568853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.041 4.041 3 C -0.138 4.138 4 C 0.116 3.884 5 F -0.130 7.130 6 C -0.136 4.136 7 C -0.106 4.106 8 C 0.027 3.973 9 O -0.665 6.665 10 S 2.588 3.412 11 O -0.967 6.967 12 O -0.969 6.969 13 C -0.609 4.609 14 C 0.073 3.927 15 C -0.164 4.164 16 C -0.159 4.159 17 C -0.515 4.515 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.908 5.908 21 Si 0.954 3.046 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.284 1.284 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.177 0.823 29 H 0.179 0.821 30 H 0.170 0.830 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 13.398 12.800 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.043 4.043 3 C -0.156 4.156 4 C 0.096 3.904 5 F -0.109 7.109 6 C -0.154 4.154 7 C -0.126 4.126 8 C -0.015 4.015 9 O -0.624 6.624 10 S 2.689 3.311 11 O -0.966 6.966 12 O -0.967 6.967 13 C -0.739 4.739 14 C 0.071 3.929 15 C -0.222 4.222 16 C -0.217 4.217 17 C -0.554 4.554 18 H 0.085 0.915 19 C -0.181 4.181 20 N -0.547 5.547 21 Si 0.781 3.219 22 H -0.188 1.188 23 H -0.212 1.212 24 H -0.210 1.210 25 H 0.120 0.880 26 H 0.123 0.877 27 H 0.066 0.934 28 H 0.195 0.805 29 H 0.196 0.804 30 H 0.188 0.812 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.417 13.434 12.785 18.550 hybrid contribution 1.241 -0.985 -0.700 1.732 sum 0.824 12.449 12.085 17.369 Atomic orbital electron populations 1.21013 0.88860 1.04521 1.04100 1.20053 0.98284 0.90785 0.95217 1.21197 0.92341 0.99189 1.02876 1.17882 0.90318 0.81695 1.00533 1.91540 1.80172 1.45650 1.93500 1.21295 1.02901 0.89230 1.01997 1.21618 0.91178 1.01551 0.98280 1.18350 0.90838 0.81281 1.10984 1.85727 1.76794 1.42225 1.57626 1.05694 0.78565 0.74426 0.72389 1.93541 1.60761 1.58670 1.83585 1.93558 1.84058 1.50799 1.68303 1.30773 1.20802 1.12974 1.09395 1.17901 0.96577 0.91873 0.86513 1.22261 0.96431 1.00308 1.03201 1.22196 0.98104 0.97954 1.03451 1.21303 0.94992 1.36048 1.03027 0.91477 1.25666 0.99825 0.96256 0.96377 1.69945 1.31715 1.43129 1.09879 0.85557 0.80458 0.77749 0.78161 1.18758 1.21175 1.21029 0.87975 0.87664 0.93376 0.80542 0.80357 0.81214 0.83618 0.83755 0.94998 0.90766 0.94028 0.93791 0.90942 0.94858 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.60 71.24 0.68 -2.15 16 2 C -0.04 -0.99 5.40 -19.77 -0.11 -1.10 16 3 C -0.14 -2.63 9.66 22.30 0.22 -2.42 16 4 C 0.12 2.24 7.30 22.38 0.16 2.40 16 5 F -0.13 -2.46 17.27 44.97 0.78 -1.69 16 6 C -0.14 -2.51 10.02 22.30 0.22 -2.28 16 7 C -0.11 -2.37 8.42 22.36 0.19 -2.18 16 8 C 0.03 0.75 4.69 22.49 0.11 0.85 16 9 O -0.66 -21.12 9.28 -62.01 -0.58 -21.69 16 10 S 2.59 97.54 3.91 -56.49 -0.22 97.32 16 11 O -0.97 -42.37 15.64 -118.57 -1.85 -44.22 16 12 O -0.97 -38.46 12.88 -118.57 -1.53 -39.99 16 13 C -0.61 -22.58 4.21 71.98 0.30 -22.27 16 14 C 0.07 3.44 0.52 -52.93 -0.03 3.42 16 15 C -0.16 -8.09 7.77 71.98 0.56 -7.53 16 16 C -0.16 -7.66 7.78 71.98 0.56 -7.10 16 17 C -0.51 -25.90 8.01 25.60 0.21 -25.70 16 18 H 0.07 3.20 7.74 -2.91 -0.02 3.18 16 19 C 0.02 0.94 5.15 84.65 0.44 1.38 16 20 N -0.91 -49.36 9.35 21.45 0.20 -49.15 16 21 Si 0.95 41.13 29.54 68.60 2.03 43.16 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 26 H 0.10 1.73 8.06 -2.39 -0.02 1.71 16 27 H 0.05 1.33 6.13 -2.39 -0.01 1.31 16 28 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.17 3.10 6.92 -2.91 -0.02 3.08 16 31 H 0.15 4.61 6.22 -2.39 -0.01 4.60 16 32 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 33 H 0.03 1.51 5.42 -2.39 -0.01 1.49 16 34 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 35 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 38 H 0.03 1.51 5.51 -2.39 -0.01 1.50 16 39 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -65.36 322.84 3.41 -61.94 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.08 Total: 19.02 kcal Atomic # 6 Polarization: -68.20 SS G_CDS: 3.51 Total: -64.69 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.20 Total: -49.15 kcal Atomic # 8 Polarization: -101.95 SS G_CDS: -3.96 Total: -105.91 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 97.54 SS G_CDS: -0.22 Total: 97.32 kcal Total: -65.36 3.41 -61.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295156550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.276 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds