Wall clock time and date at job start Fri Apr 10 2020 23:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 S 1.52201 * 113.99633 * 90.00542 * 8 7 5 10 10 O 1.42102 * 104.27741 * 191.07198 * 9 8 7 11 11 O 1.42106 * 104.27855 * 318.92572 * 9 8 7 12 12 C 1.81397 * 104.45187 * 74.99898 * 9 8 7 13 13 C 1.53002 * 109.47351 * 179.97438 * 12 9 8 14 14 C 1.53005 * 109.46704 * 300.00099 * 13 12 9 15 15 C 1.53000 * 109.46912 * 59.99550 * 13 12 9 16 16 C 1.50696 * 109.47255 * 180.02562 * 13 12 9 17 17 H 1.08004 * 119.99742 * 359.97438 * 16 13 12 18 18 C 1.37873 * 119.99727 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00352 * 359.97438 * 18 16 13 20 20 Si 1.86804 * 119.99677 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47309 * 89.99987 * 20 18 16 22 22 H 1.48500 * 109.47150 * 209.99776 * 20 18 16 23 23 H 1.48503 * 109.47260 * 329.99885 * 20 18 16 24 24 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 26 26 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 27 27 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 28 28 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47004 * 299.99679 * 12 9 8 31 31 H 1.09007 * 109.46937 * 59.99777 * 12 9 8 32 32 H 1.08996 * 109.47191 * 60.00327 * 14 13 12 33 33 H 1.09004 * 109.46499 * 180.02562 * 14 13 12 34 34 H 1.09000 * 109.47302 * 299.99506 * 14 13 12 35 35 H 1.09000 * 109.46754 * 60.00795 * 15 13 12 36 36 H 1.09004 * 109.47004 * 179.97438 * 15 13 12 37 37 H 1.08996 * 109.47909 * 300.00239 * 15 13 12 38 38 H 0.97006 * 119.99712 * 179.97438 * 19 18 16 39 39 H 1.08005 * 120.01400 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 16 4.5737 -2.9103 1.3903 10 8 5.4924 -3.9700 1.1611 11 8 4.9530 -1.7598 2.1331 12 6 2.9889 -3.5599 1.9879 13 6 3.1710 -4.1346 3.3942 14 6 4.2025 -5.2639 3.3539 15 6 3.6583 -3.0322 4.3365 16 6 1.8546 -4.6748 3.8904 17 1 0.9759 -4.6139 3.2654 18 6 1.7718 -5.2458 5.1426 19 7 2.8417 -5.3195 5.9038 20 14 0.1398 -5.9148 5.7580 21 1 0.0126 -7.3428 5.3709 22 1 0.0822 -5.7959 7.2371 23 1 -0.9727 -5.1375 5.1552 24 6 2.1970 -1.1972 -0.0005 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6554 2.1323 -0.0004 29 1 4.1167 2.1395 0.0010 30 1 2.2540 -2.7554 2.0162 31 1 2.6420 -4.3457 1.3168 32 1 5.1548 -4.8736 2.9949 33 1 4.3319 -5.6737 4.3557 34 1 3.8554 -6.0494 2.6826 35 1 2.9234 -2.2277 4.3652 36 1 3.7876 -3.4415 5.3385 37 1 4.6106 -2.6418 3.9775 38 1 2.7833 -5.7210 6.7849 39 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295242745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:14:36 Heat of formation + Delta-G solvation = -127.864134 kcal Electronic energy + Delta-G solvation = -25770.928422 eV Core-core repulsion = 21914.207465 eV Total energy + Delta-G solvation = -3856.720957 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.00794 -40.87412 -38.45932 -36.72481 -36.35244 -35.50641 -32.61771 -31.75102 -30.77182 -27.17020 -26.67179 -25.75748 -25.27794 -23.83677 -22.45737 -20.37479 -19.41241 -18.01451 -17.77373 -17.35520 -17.23804 -16.07030 -15.67802 -15.52251 -15.08454 -14.80903 -14.54964 -14.29839 -13.94173 -13.88264 -13.33241 -13.14646 -13.09956 -12.58622 -12.54102 -12.23318 -12.19968 -12.06480 -11.78007 -11.58033 -11.35142 -11.18432 -11.11574 -10.99935 -10.77268 -10.43327 -10.33126 -10.13891 -9.70324 -9.59572 -9.32319 -8.79391 -8.69112 -8.43946 -6.07169 -4.19533 0.28666 0.82827 1.04304 2.44704 3.14547 3.23060 3.30546 3.31631 3.86193 4.08329 4.33031 4.36820 4.38757 4.46357 4.75005 4.80528 4.95628 5.18117 5.27387 5.40873 5.51994 5.52083 5.56216 5.64413 5.74032 5.84359 5.95132 6.13734 6.27531 6.57666 6.64626 6.74992 6.86385 7.00152 7.27098 7.45875 7.63843 7.94108 8.04724 8.28051 8.78522 9.45986 10.94313 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.005212 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.320447 B = 5371.237664 C = 6470.447508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.080 4.080 4 C -0.137 4.137 5 C 0.121 3.879 6 F -0.120 7.120 7 C 0.049 3.951 8 O -0.672 6.672 9 S 2.569 3.431 10 O -0.930 6.930 11 O -0.953 6.953 12 C -0.603 4.603 13 C 0.085 3.915 14 C -0.166 4.166 15 C -0.164 4.164 16 C -0.502 4.502 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.104 4.104 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.150 0.850 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.027 0.973 33 H 0.097 0.903 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.096 0.904 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 12.436 -11.960 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.099 4.099 4 C -0.156 4.156 5 C 0.100 3.900 6 F -0.098 7.098 7 C 0.006 3.994 8 O -0.630 6.630 9 S 2.669 3.331 10 O -0.928 6.928 11 O -0.952 6.952 12 C -0.734 4.734 13 C 0.083 3.917 14 C -0.223 4.223 15 C -0.222 4.222 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.124 4.124 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.045 0.955 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.115 0.885 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.256 12.434 -12.014 17.594 hybrid contribution -1.041 -0.856 0.508 1.440 sum -4.297 11.579 -11.507 16.880 Atomic orbital electron populations 1.20848 0.89488 1.03441 1.03490 1.19828 0.97115 0.91705 0.99271 1.21083 0.92898 0.98446 0.97470 1.21116 0.94978 0.96618 1.02864 1.17754 0.77731 0.93159 1.01355 1.91552 1.27869 1.97214 1.93209 1.18012 0.90533 0.80872 1.09993 1.85794 1.75992 1.41550 1.59633 1.06381 0.79020 0.75254 0.72399 1.93590 1.60352 1.56625 1.82262 1.93598 1.82409 1.48634 1.70533 1.30804 1.19027 1.11597 1.11990 1.17921 0.97253 0.92522 0.83983 1.22302 0.95927 0.99478 1.04634 1.22278 0.97687 0.97400 1.04795 1.20908 0.93438 1.39023 1.00799 0.92237 1.24936 0.96629 0.95566 0.96568 1.69799 1.27832 1.44231 1.10194 0.86524 0.83692 0.79325 0.78014 1.20613 1.21107 1.19959 1.21265 0.90776 1.00611 0.99735 0.90024 0.90878 0.90821 0.83913 0.83273 0.86053 0.85694 0.95464 0.88415 0.94287 0.94414 0.88501 0.95293 0.92672 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.08 -0.78 5.88 -104.63 -0.62 -1.40 16 3 C -0.08 -0.72 9.69 -39.57 -0.38 -1.10 16 4 C -0.14 -1.49 10.02 -39.54 -0.40 -1.89 16 5 C 0.12 1.84 6.49 -39.29 -0.25 1.59 16 6 F -0.12 -2.04 16.72 2.25 0.04 -2.00 16 7 C 0.05 0.77 4.80 -39.18 -0.19 0.58 16 8 O -0.67 -12.15 9.92 -51.93 -0.52 -12.66 16 9 S 2.57 52.78 4.20 -107.50 -0.45 52.33 16 10 O -0.93 -21.55 15.71 -67.04 -1.05 -22.60 16 11 O -0.95 -20.88 13.56 -67.04 -0.91 -21.79 16 12 C -0.60 -11.94 4.40 37.16 0.16 -11.78 16 13 C 0.09 2.06 0.52 -155.66 -0.08 1.98 16 14 C -0.17 -4.12 7.77 37.16 0.29 -3.83 16 15 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 16 C -0.50 -12.94 8.01 -34.44 -0.28 -13.22 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 18 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 19 N -0.88 -23.83 9.35 55.43 0.52 -23.31 16 20 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C -0.10 -1.31 8.11 -39.45 -0.32 -1.63 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 29 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.12 2.11 6.60 -51.92 -0.34 1.77 16 31 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 32 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 33 H 0.10 2.59 6.07 -51.93 -0.32 2.28 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 37 H 0.03 0.67 5.47 -51.93 -0.28 0.39 16 38 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.15 1.63 7.50 -52.48 -0.39 1.23 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -32.19 327.02 -8.82 -41.01 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.85 Total: 2.11 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: -1.50 Total: -33.26 kcal Atomic # 7 Polarization: -23.83 SS G_CDS: 0.52 Total: -23.31 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -2.48 Total: -57.05 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 52.78 SS G_CDS: -0.45 Total: 52.33 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.19 -8.82 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295242745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.854 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds