Wall clock time and date at job start Fri Apr 10 2020 23:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 S 1.52201 * 113.99633 * 90.00542 * 8 7 5 10 10 O 1.42102 * 104.27741 * 191.07198 * 9 8 7 11 11 O 1.42106 * 104.27855 * 318.92572 * 9 8 7 12 12 C 1.81397 * 104.45187 * 74.99898 * 9 8 7 13 13 C 1.53002 * 109.47351 * 179.97438 * 12 9 8 14 14 C 1.53005 * 109.46704 * 300.00099 * 13 12 9 15 15 C 1.53000 * 109.46912 * 59.99550 * 13 12 9 16 16 C 1.50696 * 109.47255 * 180.02562 * 13 12 9 17 17 H 1.08004 * 119.99742 * 359.97438 * 16 13 12 18 18 C 1.37873 * 119.99727 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00352 * 359.97438 * 18 16 13 20 20 Si 1.86804 * 119.99677 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47309 * 89.99987 * 20 18 16 22 22 H 1.48500 * 109.47150 * 209.99776 * 20 18 16 23 23 H 1.48503 * 109.47260 * 329.99885 * 20 18 16 24 24 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 26 26 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 27 27 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 28 28 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47004 * 299.99679 * 12 9 8 31 31 H 1.09007 * 109.46937 * 59.99777 * 12 9 8 32 32 H 1.08996 * 109.47191 * 60.00327 * 14 13 12 33 33 H 1.09004 * 109.46499 * 180.02562 * 14 13 12 34 34 H 1.09000 * 109.47302 * 299.99506 * 14 13 12 35 35 H 1.09000 * 109.46754 * 60.00795 * 15 13 12 36 36 H 1.09004 * 109.47004 * 179.97438 * 15 13 12 37 37 H 1.08996 * 109.47909 * 300.00239 * 15 13 12 38 38 H 0.97006 * 119.99712 * 179.97438 * 19 18 16 39 39 H 1.08005 * 120.01400 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 16 4.5737 -2.9103 1.3903 10 8 5.4924 -3.9700 1.1611 11 8 4.9530 -1.7598 2.1331 12 6 2.9889 -3.5599 1.9879 13 6 3.1710 -4.1346 3.3942 14 6 4.2025 -5.2639 3.3539 15 6 3.6583 -3.0322 4.3365 16 6 1.8546 -4.6748 3.8904 17 1 0.9759 -4.6139 3.2654 18 6 1.7718 -5.2458 5.1426 19 7 2.8417 -5.3195 5.9038 20 14 0.1398 -5.9148 5.7580 21 1 0.0126 -7.3428 5.3709 22 1 0.0822 -5.7959 7.2371 23 1 -0.9727 -5.1375 5.1552 24 6 2.1970 -1.1972 -0.0005 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6554 2.1323 -0.0004 29 1 4.1167 2.1395 0.0010 30 1 2.2540 -2.7554 2.0162 31 1 2.6420 -4.3457 1.3168 32 1 5.1548 -4.8736 2.9949 33 1 4.3319 -5.6737 4.3557 34 1 3.8554 -6.0494 2.6826 35 1 2.9234 -2.2277 4.3652 36 1 3.7876 -3.4415 5.3385 37 1 4.6106 -2.6418 3.9775 38 1 2.7833 -5.7210 6.7849 39 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295242745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:14:34 Heat of formation + Delta-G solvation = -147.548998 kcal Electronic energy + Delta-G solvation = -25771.782022 eV Core-core repulsion = 21914.207465 eV Total energy + Delta-G solvation = -3857.574557 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.098 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -50.15562 -42.06971 -39.44981 -38.38594 -38.20149 -37.18845 -33.68574 -33.39214 -31.72589 -28.66533 -27.73583 -27.61446 -27.26471 -24.88267 -23.42814 -21.79112 -21.07074 -19.39715 -19.09615 -18.56230 -18.39331 -17.94969 -17.11925 -16.80640 -16.67730 -16.39013 -15.49061 -15.33880 -15.21016 -14.89750 -14.79701 -14.54861 -14.50077 -14.15075 -14.08639 -13.96286 -13.31160 -13.12277 -12.97362 -12.92010 -12.81698 -12.73883 -12.64897 -12.54052 -12.25354 -12.24856 -12.14727 -12.01380 -11.61433 -11.42806 -10.68220 -10.42289 -10.21715 -9.66190 -8.03050 -6.22062 -1.08745 -0.09303 -0.04119 1.05745 1.46455 1.48195 1.56770 2.28370 2.43798 2.54661 2.83853 2.95317 3.20276 3.52732 3.61762 3.72161 3.90513 4.00516 4.05479 4.11623 4.52316 4.61953 4.74309 4.76405 4.80434 4.81706 4.89758 4.92848 4.94243 5.00816 5.04785 5.32219 5.33588 5.38516 5.46673 5.64008 5.71803 5.92845 6.07378 6.30855 6.82229 7.46474 8.97472 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.005212 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.320447 B = 5371.237664 C = 6470.447508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.072 4.072 3 C -0.061 4.061 4 C -0.132 4.132 5 C 0.082 3.918 6 F -0.143 7.143 7 C 0.003 3.997 8 O -0.670 6.670 9 S 2.579 3.421 10 O -0.969 6.969 11 O -0.974 6.974 12 C -0.596 4.596 13 C 0.074 3.926 14 C -0.164 4.164 15 C -0.159 4.159 16 C -0.515 4.515 17 H 0.070 0.930 18 C 0.018 3.982 19 N -0.909 5.909 20 Si 0.957 3.043 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.262 1.262 24 C -0.114 4.114 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.191 0.809 29 H 0.178 0.822 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 14.391 -12.986 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.080 4.080 4 C -0.151 4.151 5 C 0.061 3.939 6 F -0.121 7.121 7 C -0.040 4.040 8 O -0.629 6.629 9 S 2.681 3.319 10 O -0.967 6.967 11 O -0.973 6.973 12 C -0.728 4.728 13 C 0.072 3.928 14 C -0.222 4.222 15 C -0.217 4.217 16 C -0.554 4.554 17 H 0.088 0.912 18 C -0.182 4.182 19 N -0.548 5.548 20 Si 0.783 3.217 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.186 1.186 24 C -0.134 4.134 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.208 0.792 29 H 0.195 0.805 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.490 14.384 -13.044 20.474 hybrid contribution -0.114 -1.315 0.751 1.518 sum -6.604 13.069 -12.293 19.119 Atomic orbital electron populations 1.20978 0.86912 1.05242 1.04204 1.20325 0.98837 0.91030 0.97104 1.21695 0.92081 1.00070 0.94114 1.21573 0.96050 0.96117 1.01328 1.18368 0.77191 0.94696 1.03685 1.91484 1.29570 1.97386 1.93699 1.18607 0.91903 0.80030 1.13453 1.85746 1.76634 1.42945 1.57537 1.05944 0.78919 0.74458 0.72551 1.93528 1.62052 1.57957 1.83192 1.93549 1.82935 1.49172 1.71636 1.30660 1.19384 1.13003 1.09741 1.17919 0.96500 0.92146 0.86263 1.22264 0.96549 1.00097 1.03301 1.22202 0.98072 0.97706 1.03729 1.21248 0.94224 1.38849 1.01047 0.91208 1.25700 0.99558 0.95984 0.96949 1.69949 1.29611 1.44875 1.10342 0.85567 0.80337 0.78619 0.77157 1.20598 1.21437 1.18623 1.21603 0.89485 1.02597 0.99701 0.89606 0.88078 0.90239 0.79188 0.80478 0.83421 0.83558 0.95489 0.90578 0.93905 0.93614 0.90809 0.95216 0.92897 0.81638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.01 71.24 0.71 -0.37 16 2 C -0.07 -1.16 5.88 -19.87 -0.12 -1.28 16 3 C -0.06 -0.82 9.69 22.28 0.22 -0.60 16 4 C -0.13 -2.53 10.02 22.30 0.22 -2.30 16 5 C 0.08 2.45 6.49 22.46 0.15 2.60 16 6 F -0.14 -5.01 16.72 44.97 0.75 -4.26 16 7 C 0.00 0.08 4.80 22.53 0.11 0.19 16 8 O -0.67 -24.61 9.92 -62.17 -0.62 -25.22 16 9 S 2.58 107.65 4.20 -56.49 -0.24 107.41 16 10 O -0.97 -46.41 15.71 -118.57 -1.86 -48.27 16 11 O -0.97 -43.66 13.56 -118.57 -1.61 -45.27 16 12 C -0.60 -23.08 4.40 71.98 0.32 -22.76 16 13 C 0.07 3.55 0.52 -52.93 -0.03 3.52 16 14 C -0.16 -8.34 7.77 71.98 0.56 -7.78 16 15 C -0.16 -7.87 7.78 71.98 0.56 -7.31 16 16 C -0.51 -25.99 8.01 25.60 0.21 -25.79 16 17 H 0.07 3.30 7.74 -2.91 -0.02 3.28 16 18 C 0.02 0.91 5.15 84.65 0.44 1.34 16 19 N -0.91 -49.76 9.35 21.45 0.20 -49.56 16 20 Si 0.96 40.89 29.54 68.60 2.03 42.92 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 24 C -0.11 -2.62 8.11 22.35 0.18 -2.43 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 0.41 8.08 -2.39 -0.02 0.39 16 27 H 0.08 0.68 8.08 -2.38 -0.02 0.66 16 28 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 29 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 30 H 0.15 4.85 6.60 -2.39 -0.02 4.83 16 31 H 0.15 4.97 8.14 -2.39 -0.02 4.95 16 32 H 0.03 1.33 5.46 -2.39 -0.01 1.31 16 33 H 0.08 4.17 6.07 -2.39 -0.01 4.15 16 34 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 37 H 0.03 1.42 5.47 -2.39 -0.01 1.41 16 38 H 0.26 13.73 8.31 -92.70 -0.77 12.96 16 39 H 0.17 3.15 7.50 -2.91 -0.02 3.13 16 Total: -1.00 -72.27 327.02 3.25 -69.02 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.07 Total: 16.19 kcal Atomic # 6 Polarization: -66.48 SS G_CDS: 3.52 Total: -62.96 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.20 Total: -49.56 kcal Atomic # 8 Polarization: -114.68 SS G_CDS: -4.09 Total: -118.77 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.75 Total: -4.26 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: 107.65 SS G_CDS: -0.24 Total: 107.41 kcal Total: -72.27 3.25 -69.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295242745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.528 kcal (2) G-P(sol) polarization free energy of solvation -72.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds