Wall clock time and date at job start Fri Apr 10 2020 23:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38183 * 120.00576 * 2 1 4 4 C 1.38204 * 120.07975 * 180.23147 * 3 2 1 5 5 C 1.38521 * 120.08684 * 359.78636 * 4 3 2 6 6 F 1.35102 * 119.99862 * 179.97438 * 5 4 3 7 7 C 1.38338 * 120.00483 * 359.95927 * 5 4 3 8 8 C 1.38711 * 119.92332 * 0.02562 * 7 5 4 9 9 O 1.35896 * 120.04802 * 179.97438 * 8 7 5 10 10 S 1.52208 * 113.99672 * 275.76876 * 9 8 7 11 11 O 1.42090 * 104.27814 * 319.82417 * 10 9 8 12 12 O 1.42095 * 104.27406 * 191.96355 * 10 9 8 13 13 C 1.81399 * 104.44613 * 75.89436 * 10 9 8 14 14 C 1.53005 * 109.47033 * 175.38097 * 13 10 9 15 15 C 1.53001 * 109.47224 * 300.00075 * 14 13 10 16 16 C 1.53001 * 109.46955 * 60.00235 * 14 13 10 17 17 C 1.50705 * 109.47125 * 180.02562 * 14 13 10 18 18 H 1.07997 * 120.00055 * 0.46013 * 17 14 13 19 19 C 1.37878 * 119.99655 * 180.46595 * 17 14 13 20 20 N 1.31516 * 119.99324 * 192.33150 * 19 17 14 21 21 Si 1.86799 * 120.00145 * 12.32700 * 19 17 14 22 22 H 1.48498 * 109.46935 * 85.44755 * 21 19 17 23 23 H 1.48500 * 109.46768 * 205.44739 * 21 19 17 24 24 H 1.48497 * 109.47144 * 325.44571 * 21 19 17 25 25 H 1.08997 * 109.47360 * 275.29558 * 1 2 3 26 26 H 1.08998 * 109.47310 * 35.29327 * 1 2 3 27 27 H 1.08996 * 109.47229 * 155.29275 * 1 2 3 28 28 H 1.07994 * 119.95710 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.95607 * 179.76461 * 4 3 2 30 30 H 1.08002 * 120.04202 * 180.02562 * 7 5 4 31 31 H 1.08993 * 109.47688 * 295.38134 * 13 10 9 32 32 H 1.09007 * 109.47127 * 55.38344 * 13 10 9 33 33 H 1.09003 * 109.47141 * 70.30275 * 15 14 13 34 34 H 1.08992 * 109.47328 * 190.30839 * 15 14 13 35 35 H 1.09004 * 109.47239 * 310.30841 * 15 14 13 36 36 H 1.08993 * 109.46996 * 59.99831 * 16 14 13 37 37 H 1.08994 * 109.46807 * 180.02562 * 16 14 13 38 38 H 1.08998 * 109.46640 * 299.99804 * 16 14 13 39 39 H 0.97002 * 119.99273 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1966 0.0000 4 6 3.5800 1.1984 -0.0048 5 6 4.2760 0.0008 -0.0052 6 9 5.6270 0.0046 -0.0105 7 6 3.5878 -1.1993 0.0001 8 6 2.2007 -1.2014 0.0053 9 8 1.5221 -2.3788 0.0099 10 16 1.3289 -2.9875 -1.3717 11 8 1.0340 -1.8759 -2.2062 12 8 0.3780 -4.0236 -1.1683 13 6 2.9505 -3.6848 -1.7898 14 6 2.8560 -4.4330 -3.1210 15 6 1.8311 -5.5625 -2.9997 16 6 2.4188 -3.4636 -4.2210 17 6 4.2030 -5.0129 -3.4681 18 1 5.0407 -4.8691 -2.8018 19 6 4.3659 -5.7269 -4.6363 20 7 5.4581 -6.4341 -4.8277 21 14 3.0354 -5.6897 -5.9469 22 1 3.2347 -4.5060 -6.8211 23 1 3.1112 -6.9272 -6.7643 24 1 1.7027 -5.6065 -5.2971 25 1 -0.3634 0.0948 1.0232 26 1 -0.3634 0.8388 -0.5937 27 1 -0.3633 -0.9335 -0.4295 28 1 1.6574 2.1315 -0.0004 29 1 4.1181 2.1348 -0.0087 30 1 4.1298 -2.1334 0.0002 31 1 3.6807 -2.8802 -1.8763 32 1 3.2620 -4.3755 -1.0061 33 1 0.8293 -5.1383 -2.9309 34 1 1.8938 -6.2059 -3.8772 35 1 2.0399 -6.1480 -2.1042 36 1 3.1490 -2.6590 -4.3074 37 1 2.3511 -3.9967 -5.1692 38 1 1.4444 -3.0446 -3.9697 39 1 5.5728 -6.9362 -5.6497 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296330781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:14:42 Heat of formation + Delta-G solvation = -106.989584 kcal Electronic energy + Delta-G solvation = -25819.409802 eV Core-core repulsion = 21963.594033 eV Total energy + Delta-G solvation = -3855.815768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.12472 -41.28593 -38.16822 -36.93665 -36.81812 -35.78043 -32.82865 -31.99029 -30.90234 -27.68926 -26.95661 -26.44386 -25.07144 -23.94951 -22.31386 -20.82266 -19.69594 -18.41066 -17.77146 -17.56463 -16.57468 -16.25263 -15.94643 -15.80069 -15.72637 -15.38812 -14.83779 -14.23345 -14.08744 -13.82516 -13.55121 -13.25462 -13.13609 -12.97504 -12.70011 -12.57633 -12.35338 -12.10272 -12.00812 -11.84250 -11.75069 -11.68942 -11.56658 -11.21960 -11.10969 -10.81514 -10.22463 -10.06577 -10.00972 -9.41999 -9.07712 -8.84452 -8.77822 -8.53965 -6.21812 -4.20854 0.13864 0.74964 0.91076 2.24897 3.06734 3.22015 3.30828 3.35965 3.79794 3.94064 4.17715 4.30766 4.32511 4.41799 4.57185 4.68769 4.86731 5.06958 5.22591 5.27786 5.35661 5.41488 5.50943 5.57003 5.74580 5.78683 5.89417 5.89749 6.02189 6.10331 6.21854 6.35535 6.45751 6.49686 6.63663 6.80939 7.06642 7.26447 7.56836 8.34810 8.79699 9.40859 10.90653 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.017467 B = 0.005308 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.662121 B = 5273.598400 C = 6177.226705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.068 4.068 3 C -0.076 4.076 4 C -0.137 4.137 5 C 0.118 3.882 6 F -0.128 7.128 7 C -0.171 4.171 8 C 0.108 3.892 9 O -0.670 6.670 10 S 2.569 3.431 11 O -0.954 6.954 12 O -0.928 6.928 13 C -0.599 4.599 14 C 0.057 3.943 15 C -0.177 4.177 16 C -0.177 4.177 17 C -0.508 4.508 18 H 0.079 0.921 19 C 0.078 3.922 20 N -0.889 5.889 21 Si 0.869 3.131 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.241 1.241 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.158 0.842 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 15.394 10.758 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.094 4.094 4 C -0.157 4.157 5 C 0.098 3.902 6 F -0.106 7.106 7 C -0.191 4.191 8 C 0.066 3.934 9 O -0.628 6.628 10 S 2.669 3.331 11 O -0.952 6.952 12 O -0.926 6.926 13 C -0.730 4.730 14 C 0.055 3.945 15 C -0.235 4.235 16 C -0.234 4.234 17 C -0.547 4.547 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.525 5.525 21 Si 0.700 3.300 22 H -0.208 1.208 23 H -0.227 1.227 24 H -0.167 1.167 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.176 0.824 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.250 15.343 10.802 20.116 hybrid contribution 0.438 -0.560 -0.933 1.173 sum -6.812 14.783 9.869 19.035 Atomic orbital electron populations 1.20803 0.89522 1.04078 1.02853 1.20057 0.97701 0.91218 0.98089 1.20814 0.92980 0.97514 0.98130 1.21327 0.94917 0.97484 1.01952 1.17188 0.77343 0.93389 1.02281 1.91564 1.28066 1.97282 1.93688 1.21421 0.92991 1.00037 1.04677 1.17435 0.88814 0.81707 1.05468 1.85755 1.76131 1.41233 1.59699 1.06341 0.79070 0.75229 0.72438 1.93609 1.84188 1.50515 1.66923 1.93611 1.58545 1.57816 1.82636 1.30703 1.19911 1.12200 1.10152 1.18219 0.98374 0.91435 0.86515 1.22806 0.97027 1.00433 1.03202 1.22735 1.00066 1.00150 1.00460 1.20635 0.93125 1.33746 1.07165 0.90298 1.24961 0.95530 0.93899 0.98183 1.69916 1.27513 1.28677 1.26394 0.87541 0.84095 0.76461 0.81885 1.20770 1.22691 1.16703 0.90052 0.89941 0.91549 0.83418 0.83545 0.82431 0.85319 0.84843 0.93931 0.91054 0.92275 0.91555 0.92774 0.93853 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.59 36.00 0.35 -0.89 16 2 C -0.07 -0.82 5.41 -104.46 -0.56 -1.38 16 3 C -0.08 -0.69 9.72 -39.61 -0.38 -1.07 16 4 C -0.14 -1.27 10.02 -39.49 -0.40 -1.67 16 5 C 0.12 1.38 7.30 -39.44 -0.29 1.09 16 6 F -0.13 -1.58 17.27 2.25 0.04 -1.54 16 7 C -0.17 -2.22 8.47 -39.37 -0.33 -2.55 16 8 C 0.11 1.52 4.68 -39.22 -0.18 1.33 16 9 O -0.67 -10.48 9.15 -51.74 -0.47 -10.95 16 10 S 2.57 46.26 3.85 -107.50 -0.41 45.85 16 11 O -0.95 -17.71 13.41 -67.04 -0.90 -18.61 16 12 O -0.93 -18.85 15.58 -67.04 -1.04 -19.90 16 13 C -0.60 -11.16 4.07 37.16 0.15 -11.01 16 14 C 0.06 1.30 0.52 -155.65 -0.08 1.22 16 15 C -0.18 -3.98 6.88 37.16 0.26 -3.73 16 16 C -0.18 -3.91 7.32 37.16 0.27 -3.63 16 17 C -0.51 -13.57 8.62 -34.44 -0.30 -13.87 16 18 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.08 2.16 5.34 -17.82 -0.10 2.07 16 20 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 21 Si 0.87 21.18 22.73 -169.99 -3.86 17.32 16 22 H -0.28 -6.74 7.08 56.52 0.40 -6.34 16 23 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.24 -5.47 4.59 56.52 0.26 -5.22 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 27 H 0.07 0.85 6.18 -51.93 -0.32 0.53 16 28 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.16 1.88 6.94 -52.49 -0.36 1.52 16 31 H 0.13 2.17 6.47 -51.93 -0.34 1.83 16 32 H 0.13 2.24 8.14 -51.92 -0.42 1.82 16 33 H 0.04 0.90 6.00 -51.93 -0.31 0.58 16 34 H 0.07 1.64 4.05 -51.93 -0.21 1.43 16 35 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.05 1.23 2.46 -51.93 -0.13 1.10 16 38 H 0.04 0.87 5.68 -51.93 -0.30 0.58 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -32.35 313.49 -7.38 -39.73 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.62 Total: 3.03 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: -1.60 Total: -34.10 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.77 Total: -25.56 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -2.42 Total: -49.46 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -3.86 Total: 17.32 kcal Atomic # 16 Polarization: 46.26 SS G_CDS: -0.41 Total: 45.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.35 -7.38 -39.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296330781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.260 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds