Wall clock time and date at job start Fri Apr 10 2020 23:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33807 * 125.78321 * 2 1 4 4 C 1.34192 * 110.85079 * 180.02562 * 3 2 1 5 5 S 1.76206 * 125.46109 * 179.97438 * 4 3 2 6 6 O 1.42103 * 106.39944 * 156.48565 * 5 4 3 7 7 O 1.42096 * 106.39886 * 23.56394 * 5 4 3 8 8 N 1.65601 * 107.21566 * 270.02137 * 5 4 3 9 9 C 1.46504 * 120.00009 * 90.00196 * 8 5 4 10 10 C 1.46497 * 119.99903 * 269.99613 * 8 5 4 11 11 C 1.34245 * 109.07996 * 0.22384 * 4 3 2 12 12 C 1.36192 * 125.79430 * 179.97438 * 2 1 3 13 13 C 1.47704 * 127.16543 * 359.96089 * 12 2 1 14 14 O 1.35250 * 120.00379 * 180.02562 * 13 12 2 15 15 N 1.30169 * 119.99958 * 0.02562 * 13 12 2 16 16 C 1.46495 * 120.00331 * 185.35835 * 15 13 12 17 17 C 1.50702 * 109.47303 * 115.34005 * 16 15 13 18 18 H 1.08008 * 119.99634 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00095 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99827 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00225 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47165 * 89.99930 * 21 19 17 23 23 H 1.48503 * 109.47190 * 210.00189 * 21 19 17 24 24 H 1.48505 * 109.47121 * 330.00289 * 21 19 17 25 25 H 1.08992 * 109.47802 * 0.02807 * 1 2 3 26 26 H 1.09000 * 109.47365 * 120.03423 * 1 2 3 27 27 H 1.09004 * 109.46963 * 240.02539 * 1 2 3 28 28 H 1.08998 * 109.47065 * 270.00036 * 9 8 5 29 29 H 1.09004 * 109.46743 * 29.99627 * 9 8 5 30 30 H 1.08997 * 109.46768 * 149.99507 * 9 8 5 31 31 H 1.08998 * 109.47559 * 270.00024 * 10 8 5 32 32 H 1.08997 * 109.47361 * 30.00654 * 10 8 5 33 33 H 1.09009 * 109.46672 * 150.00182 * 10 8 5 34 34 H 1.08003 * 127.01326 * 179.77410 * 11 4 3 35 35 H 0.96702 * 113.99569 * 55.30074 * 14 13 12 36 36 H 1.09001 * 109.47448 * 235.34257 * 16 15 13 37 37 H 1.09001 * 109.46862 * 355.34264 * 16 15 13 38 38 H 0.97005 * 119.99562 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2894 1.0855 0.0000 4 6 3.5860 0.7397 -0.0006 5 16 4.9435 1.8630 -0.0014 6 8 6.0498 1.1558 0.5421 7 8 4.4563 3.0815 0.5436 8 7 5.3200 2.1757 -1.5835 9 6 4.6777 3.2915 -2.2826 10 6 6.2954 1.3365 -2.2839 11 6 3.6831 -0.5992 -0.0059 12 6 2.3035 -1.1047 0.0005 13 6 1.8707 -2.5169 0.0019 14 8 2.7923 -3.5067 0.0028 15 7 0.6022 -2.8088 0.0024 16 6 0.1715 -4.2039 0.1223 17 6 -0.5839 -4.3873 1.4133 18 1 -0.7292 -3.5483 2.0778 19 6 -1.0897 -5.6260 1.7461 20 7 -1.7495 -5.7859 2.8725 21 14 -0.8379 -7.0771 0.5971 22 1 0.4253 -7.7738 0.9491 23 1 -1.9775 -8.0196 0.7329 24 1 -0.7614 -6.5915 -0.8042 25 1 -0.3634 1.0275 -0.0005 26 1 -0.3634 -0.5144 -0.8897 27 1 -0.3633 -0.5135 0.8903 28 1 3.7619 2.9425 -2.7596 29 1 4.4378 4.0784 -1.5674 30 1 5.3557 3.6838 -3.0406 31 1 7.2938 1.7542 -2.1539 32 1 6.2675 0.3272 -1.8734 33 1 6.0506 1.3039 -3.3456 34 1 4.5902 -1.1853 -0.0111 35 1 3.4285 -3.4511 0.7290 36 1 -0.4761 -4.4577 -0.7169 37 1 1.0453 -4.8555 0.1169 38 1 -2.1050 -6.6575 3.1068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331167114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:15:05 Heat of formation + Delta-G solvation = -71.400048 kcal Electronic energy + Delta-G solvation = -24286.201221 eV Core-core repulsion = 20451.848692 eV Total energy + Delta-G solvation = -3834.352529 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -42.61294 -38.25226 -37.66166 -36.59987 -36.22433 -34.18330 -33.30076 -32.36695 -31.79545 -28.54032 -28.31794 -26.97839 -25.10863 -23.72697 -21.81840 -21.24736 -20.18912 -19.26360 -18.65609 -17.85026 -16.87965 -16.55750 -16.42741 -16.13504 -15.67752 -15.08111 -14.84790 -14.71952 -14.50768 -14.15427 -13.60774 -13.49303 -13.08672 -13.00965 -12.80391 -12.77215 -12.59939 -12.46303 -12.32981 -12.11188 -12.09009 -11.97163 -11.65389 -11.52735 -10.90967 -10.61598 -10.59204 -10.19003 -9.72482 -9.62305 -9.27076 -8.98342 -8.58735 -8.13221 -6.16131 -4.15811 -0.13810 1.02327 1.59529 2.42956 2.79046 3.20594 3.23628 3.30693 3.31503 3.34006 4.08871 4.21438 4.31620 4.33620 4.53935 4.65246 4.79600 4.90785 4.96119 5.16966 5.18326 5.33950 5.38837 5.40216 5.47315 5.51940 5.56448 5.77723 5.92454 6.00999 6.18020 6.41170 6.77073 6.84640 6.99422 7.52221 7.90818 8.26505 8.65944 8.88805 9.43541 10.96467 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.027460 B = 0.003054 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.405282 B = 9166.337014 C = 9475.693848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.103 3.897 3 O -0.126 6.126 4 C -0.589 4.589 5 S 2.726 3.274 6 O -0.933 6.933 7 O -0.938 6.938 8 N -1.000 6.000 9 C 0.081 3.919 10 C 0.089 3.911 11 C -0.060 4.060 12 C -0.185 4.185 13 C 0.349 3.651 14 O -0.518 6.518 15 N -0.470 5.470 16 C 0.142 3.858 17 C -0.514 4.514 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.266 1.266 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.171 0.829 35 H 0.389 0.611 36 H 0.044 0.956 37 H 0.015 0.985 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.380 17.097 -11.789 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.046 3.954 3 O -0.021 6.021 4 C -0.718 4.718 5 S 2.809 3.191 6 O -0.924 6.924 7 O -0.929 6.929 8 N -0.841 5.841 9 C -0.064 4.064 10 C -0.056 4.056 11 C -0.083 4.083 12 C -0.189 4.189 13 C 0.121 3.879 14 O -0.319 6.319 15 N -0.197 5.197 16 C 0.014 3.986 17 C -0.552 4.552 18 H 0.095 0.905 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.706 3.294 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.191 1.191 25 H 0.092 0.908 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.189 0.811 35 H 0.243 0.757 36 H 0.061 0.939 37 H 0.033 0.967 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.442 17.609 -11.536 25.529 hybrid contribution 0.585 -2.213 -0.334 2.313 sum 15.027 15.396 -11.869 24.571 Atomic orbital electron populations 1.20620 0.82404 1.03322 1.06608 1.23428 0.94886 0.83355 0.93763 1.83909 1.13591 1.33726 1.70882 1.35456 0.98969 1.11715 1.25664 1.01562 0.72371 0.72872 0.72323 1.93651 1.47515 1.75383 1.75817 1.93585 1.81262 1.42401 1.75606 1.57346 1.53664 1.40793 1.32271 1.21693 0.97908 0.88237 0.98547 1.21592 0.91486 0.94150 0.98362 1.22918 0.98083 0.92549 0.94724 1.20160 0.91711 0.92555 1.14452 1.20749 0.85624 0.84039 0.97517 1.84896 1.45035 1.49406 1.52571 1.72609 1.10561 1.25578 1.10977 1.20250 0.96010 0.83629 0.98666 1.20847 1.34704 0.96992 1.02707 0.90469 1.24866 0.94497 0.98511 0.95154 1.69884 1.36596 1.24174 1.22796 0.86789 0.78106 0.82627 0.81856 1.20061 1.20948 1.19088 0.90761 0.87748 0.87291 0.92263 0.89491 0.90131 0.91694 0.90719 0.90502 0.81140 0.75657 0.93884 0.96693 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 9.04 36.00 0.33 -0.68 16 2 C 0.10 1.57 7.37 -35.05 -0.26 1.31 16 3 O -0.13 -1.81 10.53 7.32 0.08 -1.74 16 4 C -0.59 -7.62 7.32 29.32 0.21 -7.40 16 5 S 2.73 30.09 5.80 -107.50 -0.62 29.47 16 6 O -0.93 -11.68 16.89 -57.17 -0.97 -12.65 16 7 O -0.94 -12.69 16.62 -57.27 -0.95 -13.64 16 8 N -1.00 -7.82 3.58 -129.20 -0.46 -8.29 16 9 C 0.08 0.49 10.66 59.85 0.64 1.13 16 10 C 0.09 0.51 10.29 59.85 0.62 1.12 16 11 C -0.06 -0.79 10.74 -37.48 -0.40 -1.19 16 12 C -0.19 -2.98 6.32 -103.25 -0.65 -3.63 16 13 C 0.35 6.60 7.80 -14.39 -0.11 6.49 16 14 O -0.52 -9.04 11.88 -17.44 -0.21 -9.25 16 15 N -0.47 -10.34 8.76 -60.46 -0.53 -10.87 16 16 C 0.14 3.58 5.16 -5.20 -0.03 3.55 16 17 C -0.51 -14.85 9.94 -34.44 -0.34 -15.19 16 18 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 21 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.10 1.42 8.00 -51.93 -0.42 1.01 16 27 H 0.11 1.67 7.99 -51.93 -0.42 1.26 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.57 7.02 -51.93 -0.36 0.20 16 30 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.41 7.79 -51.93 -0.40 0.01 16 33 H 0.08 0.30 8.07 -51.92 -0.42 -0.12 16 34 H 0.17 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.39 4.90 9.06 45.56 0.41 5.32 16 36 H 0.04 1.10 7.20 -51.93 -0.37 0.72 16 37 H 0.02 0.38 6.16 -51.93 -0.32 0.06 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -37.11 344.58 -6.46 -43.57 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.00 Total: 0.39 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.10 Total: -12.49 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.22 Total: -45.75 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -2.05 Total: -37.27 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 30.09 SS G_CDS: -0.62 Total: 29.47 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.11 -6.46 -43.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331167114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.829 kcal (2) G-P(sol) polarization free energy of solvation -37.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds