Wall clock time and date at job start Fri Apr 10 2020 23:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33807 * 125.78321 * 2 1 4 4 C 1.34192 * 110.85079 * 180.02562 * 3 2 1 5 5 S 1.76206 * 125.46109 * 179.97438 * 4 3 2 6 6 O 1.42103 * 106.39944 * 156.48565 * 5 4 3 7 7 O 1.42096 * 106.39886 * 23.56394 * 5 4 3 8 8 N 1.65601 * 107.21566 * 270.02137 * 5 4 3 9 9 C 1.46504 * 120.00009 * 90.00196 * 8 5 4 10 10 C 1.46497 * 119.99903 * 269.99613 * 8 5 4 11 11 C 1.34245 * 109.07996 * 0.22384 * 4 3 2 12 12 C 1.36192 * 125.79430 * 179.97438 * 2 1 3 13 13 C 1.47704 * 127.16543 * 359.96089 * 12 2 1 14 14 O 1.35250 * 120.00379 * 180.02562 * 13 12 2 15 15 N 1.30169 * 119.99958 * 0.02562 * 13 12 2 16 16 C 1.46495 * 120.00331 * 185.35835 * 15 13 12 17 17 C 1.50702 * 109.47303 * 115.34005 * 16 15 13 18 18 H 1.08008 * 119.99634 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00095 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99827 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00225 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47165 * 89.99930 * 21 19 17 23 23 H 1.48503 * 109.47190 * 210.00189 * 21 19 17 24 24 H 1.48505 * 109.47121 * 330.00289 * 21 19 17 25 25 H 1.08992 * 109.47802 * 0.02807 * 1 2 3 26 26 H 1.09000 * 109.47365 * 120.03423 * 1 2 3 27 27 H 1.09004 * 109.46963 * 240.02539 * 1 2 3 28 28 H 1.08998 * 109.47065 * 270.00036 * 9 8 5 29 29 H 1.09004 * 109.46743 * 29.99627 * 9 8 5 30 30 H 1.08997 * 109.46768 * 149.99507 * 9 8 5 31 31 H 1.08998 * 109.47559 * 270.00024 * 10 8 5 32 32 H 1.08997 * 109.47361 * 30.00654 * 10 8 5 33 33 H 1.09009 * 109.46672 * 150.00182 * 10 8 5 34 34 H 1.08003 * 127.01326 * 179.77410 * 11 4 3 35 35 H 0.96702 * 113.99569 * 55.30074 * 14 13 12 36 36 H 1.09001 * 109.47448 * 235.34257 * 16 15 13 37 37 H 1.09001 * 109.46862 * 355.34264 * 16 15 13 38 38 H 0.97005 * 119.99562 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2894 1.0855 0.0000 4 6 3.5860 0.7397 -0.0006 5 16 4.9435 1.8630 -0.0014 6 8 6.0498 1.1558 0.5421 7 8 4.4563 3.0815 0.5436 8 7 5.3200 2.1757 -1.5835 9 6 4.6777 3.2915 -2.2826 10 6 6.2954 1.3365 -2.2839 11 6 3.6831 -0.5992 -0.0059 12 6 2.3035 -1.1047 0.0005 13 6 1.8707 -2.5169 0.0019 14 8 2.7923 -3.5067 0.0028 15 7 0.6022 -2.8088 0.0024 16 6 0.1715 -4.2039 0.1223 17 6 -0.5839 -4.3873 1.4133 18 1 -0.7292 -3.5483 2.0778 19 6 -1.0897 -5.6260 1.7461 20 7 -1.7495 -5.7859 2.8725 21 14 -0.8379 -7.0771 0.5971 22 1 0.4253 -7.7738 0.9491 23 1 -1.9775 -8.0196 0.7329 24 1 -0.7614 -6.5915 -0.8042 25 1 -0.3634 1.0275 -0.0005 26 1 -0.3634 -0.5144 -0.8897 27 1 -0.3633 -0.5135 0.8903 28 1 3.7619 2.9425 -2.7596 29 1 4.4378 4.0784 -1.5674 30 1 5.3557 3.6838 -3.0406 31 1 7.2938 1.7542 -2.1539 32 1 6.2675 0.3272 -1.8734 33 1 6.0506 1.3039 -3.3456 34 1 4.5902 -1.1853 -0.0111 35 1 3.4285 -3.4511 0.7290 36 1 -0.4761 -4.4577 -0.7169 37 1 1.0453 -4.8555 0.1169 38 1 -2.1050 -6.6575 3.1068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331167114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:15:05 Heat of formation + Delta-G solvation = -104.378617 kcal Electronic energy + Delta-G solvation = -24287.631279 eV Core-core repulsion = 20451.848692 eV Total energy + Delta-G solvation = -3835.782587 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.75510 -39.73557 -38.61055 -37.26288 -37.07842 -35.91666 -34.80965 -33.95694 -33.14119 -30.11793 -28.98062 -28.25517 -25.67845 -25.35996 -23.12052 -22.69916 -21.44703 -20.45087 -19.55253 -19.04750 -18.69096 -17.77469 -17.47253 -17.18008 -16.88104 -16.35894 -16.13949 -16.07280 -15.51029 -15.39669 -14.73078 -14.59804 -14.24750 -14.18871 -14.07855 -13.93059 -13.63540 -13.45289 -13.37335 -13.31727 -13.23154 -12.71324 -12.68619 -12.66848 -12.54851 -12.42989 -12.32213 -11.83504 -11.49766 -10.96067 -10.62368 -10.51716 -10.15882 -9.64567 -8.38411 -6.44687 -1.00151 -0.06115 0.30512 1.31334 1.32834 1.44831 1.47315 1.77237 1.90392 2.27955 2.42760 2.82862 2.97431 3.18625 3.29386 3.51165 3.68759 3.80571 4.23286 4.41125 4.48545 4.52197 4.57070 4.59527 4.63652 4.78883 4.84139 4.90254 4.96653 5.00192 5.03720 5.04730 5.20219 5.42353 5.45753 5.64623 6.09404 6.56201 6.63273 6.98700 7.22073 8.77951 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.027460 B = 0.003054 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.405282 B = 9166.337014 C = 9475.693848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.104 3.896 3 O -0.129 6.129 4 C -0.589 4.589 5 S 2.741 3.259 6 O -0.948 6.948 7 O -0.965 6.965 8 N -0.991 5.991 9 C 0.071 3.929 10 C 0.076 3.924 11 C -0.053 4.053 12 C -0.215 4.215 13 C 0.374 3.626 14 O -0.525 6.525 15 N -0.511 5.511 16 C 0.155 3.845 17 C -0.526 4.526 18 H 0.032 0.968 19 C 0.014 3.986 20 N -0.942 5.942 21 Si 0.953 3.047 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.253 1.253 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.202 0.798 35 H 0.412 0.588 36 H 0.038 0.962 37 H 0.015 0.985 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.523 17.332 -14.002 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.046 3.954 3 O -0.024 6.024 4 C -0.715 4.715 5 S 2.822 3.178 6 O -0.938 6.938 7 O -0.955 6.955 8 N -0.834 5.834 9 C -0.073 4.073 10 C -0.068 4.068 11 C -0.075 4.075 12 C -0.218 4.218 13 C 0.147 3.853 14 O -0.330 6.330 15 N -0.239 5.239 16 C 0.027 3.973 17 C -0.564 4.564 18 H 0.050 0.950 19 C -0.184 4.184 20 N -0.582 5.582 21 Si 0.775 3.225 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.177 1.177 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.219 0.781 35 H 0.270 0.730 36 H 0.056 0.944 37 H 0.033 0.967 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.601 17.850 -13.735 27.980 hybrid contribution 0.086 -2.081 0.356 2.113 sum 16.687 15.769 -13.379 26.572 Atomic orbital electron populations 1.20603 0.81852 1.04939 1.05402 1.23672 0.95494 0.83523 0.92750 1.83923 1.14262 1.33382 1.70828 1.35999 0.98701 1.12214 1.24572 1.01133 0.71545 0.71959 0.73155 1.93624 1.47628 1.75542 1.76977 1.93550 1.81604 1.43316 1.77024 1.57176 1.53625 1.41240 1.31333 1.21945 0.99016 0.87485 0.98869 1.21915 0.91485 0.93988 0.99452 1.23226 0.97757 0.92716 0.93767 1.20166 0.93602 0.91243 1.16836 1.21075 0.85201 0.85361 0.93685 1.84814 1.45237 1.49219 1.53693 1.72619 1.12366 1.23201 1.15719 1.19884 0.95297 0.85873 0.96236 1.21053 1.35439 0.95916 1.03961 0.94977 1.25837 0.93886 1.01804 0.96869 1.70031 1.37878 1.25337 1.24954 0.85632 0.78590 0.78358 0.79879 1.18858 1.20021 1.17669 0.87751 0.87880 0.89496 0.91578 0.90282 0.87197 0.90491 0.90525 0.88215 0.78099 0.72959 0.94409 0.96693 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.97 9.04 71.24 0.64 -1.33 16 2 C 0.10 3.09 7.37 25.21 0.19 3.27 16 3 O -0.13 -3.56 10.53 3.28 0.03 -3.53 16 4 C -0.59 -14.20 7.32 66.91 0.49 -13.71 16 5 S 2.74 55.75 5.80 -56.49 -0.33 55.42 16 6 O -0.95 -21.89 16.89 -128.00 -2.16 -24.05 16 7 O -0.96 -25.09 16.62 -127.90 -2.13 -27.22 16 8 N -0.99 -12.88 3.58 -562.68 -2.02 -14.90 16 9 C 0.07 0.67 10.66 127.77 1.36 2.03 16 10 C 0.08 0.62 10.29 127.77 1.31 1.93 16 11 C -0.05 -1.28 10.74 23.63 0.25 -1.02 16 12 C -0.21 -6.70 6.32 -18.98 -0.12 -6.82 16 13 C 0.37 13.96 7.80 87.44 0.68 14.64 16 14 O -0.52 -17.49 11.88 -85.34 -1.01 -18.50 16 15 N -0.51 -22.81 8.76 -459.32 -4.02 -26.83 16 16 C 0.16 7.89 5.16 85.63 0.44 8.34 16 17 C -0.53 -31.39 9.94 25.60 0.25 -31.13 16 18 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 19 C 0.01 0.85 5.47 84.65 0.46 1.31 16 20 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 21 Si 0.95 44.47 27.47 68.60 1.88 46.35 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 25 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.10 2.85 8.00 -2.39 -0.02 2.83 16 27 H 0.09 2.81 7.99 -2.38 -0.02 2.79 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.89 7.02 -2.39 -0.02 0.88 16 30 H 0.11 0.42 8.07 -2.39 -0.02 0.40 16 31 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 0.61 7.79 -2.39 -0.02 0.59 16 33 H 0.10 0.38 8.07 -2.38 -0.02 0.36 16 34 H 0.20 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.41 9.52 9.06 -74.06 -0.67 8.85 16 36 H 0.04 1.93 7.20 -2.39 -0.02 1.91 16 37 H 0.02 0.75 6.16 -2.39 -0.01 0.74 16 38 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -81.78 344.58 -3.11 -84.89 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.37 Total: 9.63 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 5.97 Total: -22.49 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -5.74 Total: -100.51 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -5.27 Total: -73.30 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Atomic # 16 Polarization: 55.75 SS G_CDS: -0.33 Total: 55.42 kcal Total: -81.78 -3.11 -84.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331167114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.491 kcal (2) G-P(sol) polarization free energy of solvation -81.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds