Wall clock time and date at job start Fri Apr 10 2020 23:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38385 * 120.44177 * 2 1 4 4 C 1.38896 * 118.48681 * 180.27628 * 3 2 1 5 5 Cl 1.73595 * 120.36023 * 179.70651 * 4 3 2 6 6 C 1.38230 * 119.28473 * 359.73248 * 4 3 2 7 7 N 1.31903 * 120.82913 * 359.97438 * 6 4 3 8 8 C 1.32381 * 121.65026 * 359.97438 * 7 6 4 9 9 N 1.39370 * 119.68605 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99660 * 0.02562 * 9 8 7 11 11 O 1.21547 * 120.00301 * 359.97438 * 10 9 8 12 12 C 1.47849 * 119.99812 * 179.72322 * 10 9 8 13 13 C 1.39942 * 120.02473 * 0.02562 * 12 10 9 14 14 C 1.38324 * 120.35383 * 179.69355 * 13 12 10 15 15 C 1.37756 * 120.41048 * 0.60581 * 14 13 12 16 16 C 1.40750 * 120.04997 * 359.67246 * 15 14 13 17 17 C 1.41439 * 120.17987 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00325 * 334.92793 * 17 16 15 19 19 C 1.39937 * 119.99828 * 154.93340 * 17 16 15 20 20 N 1.30830 * 119.99945 * 342.58029 * 19 17 16 21 21 Si 1.86796 * 120.00011 * 162.58276 * 19 17 16 22 22 H 1.48496 * 109.47174 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47467 * 119.99632 * 21 19 17 24 24 H 1.48500 * 109.47368 * 239.99744 * 21 19 17 25 25 C 1.39011 * 120.02721 * 180.27131 * 12 10 9 26 26 H 1.08996 * 109.47748 * 270.25393 * 1 2 3 27 27 H 1.08999 * 109.47043 * 30.25649 * 1 2 3 28 28 H 1.09003 * 109.47217 * 150.25278 * 1 2 3 29 29 H 1.07996 * 120.76193 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.58477 * 180.02562 * 6 4 3 31 31 H 0.96999 * 120.00227 * 180.02562 * 9 8 7 32 32 H 1.07995 * 119.82250 * 0.02562 * 13 12 10 33 33 H 1.07994 * 119.79376 * 180.28226 * 14 13 12 34 34 H 1.08003 * 119.97559 * 179.69894 * 15 14 13 35 35 H 0.97005 * 119.99572 * 180.02562 * 20 19 17 36 36 H 1.08002 * 120.20553 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1931 0.0000 4 6 3.5963 1.1457 -0.0059 5 17 4.5242 2.6128 -0.0138 6 6 4.2309 -0.0823 -0.0059 7 7 3.5350 -1.2028 0.0001 8 6 2.2113 -1.1984 0.0068 9 7 1.5170 -2.4069 0.0136 10 6 2.1935 -3.5726 0.0137 11 8 3.4090 -3.5700 0.0075 12 6 1.4571 -4.8546 0.0270 13 6 0.0578 -4.8583 0.0390 14 6 -0.6381 -6.0537 0.0451 15 6 0.0378 -7.2540 0.0521 16 6 1.4452 -7.2704 0.0461 17 6 2.1420 -8.5012 0.0527 18 1 1.6727 -9.3853 0.4580 19 6 3.4398 -8.5733 -0.4659 20 7 3.8838 -7.6260 -1.2515 21 14 4.5381 -10.0219 -0.0364 22 1 3.8053 -10.9491 0.8628 23 1 4.9221 -10.7377 -1.2795 24 1 5.7601 -9.5305 0.6495 25 6 2.1543 -6.0573 0.0329 26 1 -0.3634 0.0046 1.0276 27 1 -0.3633 0.8877 -0.5178 28 1 -0.3634 -0.8923 -0.5099 29 1 1.6879 2.1395 0.0004 30 1 5.3101 -0.1248 -0.0100 31 1 0.5471 -2.4090 0.0181 32 1 -0.4818 -3.9227 0.0380 33 1 -1.7180 -6.0460 0.0496 34 1 -0.5126 -8.1832 0.0617 35 1 4.7833 -7.6762 -1.6112 36 1 3.2343 -6.0593 0.0273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335784288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:15:28 Heat of formation + Delta-G solvation = 3.486260 kcal Electronic energy + Delta-G solvation = -22603.390109 eV Core-core repulsion = 19077.550108 eV Total energy + Delta-G solvation = -3525.840001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.09577 -40.45401 -38.82306 -37.64775 -36.17768 -35.55095 -34.62524 -32.46018 -31.36104 -31.04969 -28.35405 -27.25390 -25.72542 -23.79558 -23.13167 -22.75843 -21.32908 -19.82226 -19.15808 -17.99525 -17.41608 -17.04859 -16.78453 -16.55151 -16.37998 -15.80689 -15.32970 -15.23317 -15.00915 -14.55054 -14.31628 -14.15221 -13.85604 -13.72559 -13.53622 -13.20497 -12.99095 -12.95303 -12.80972 -12.56012 -12.20212 -12.18581 -11.93154 -11.61598 -11.52824 -11.16360 -11.09848 -10.65874 -10.18519 -9.58229 -9.41536 -9.16389 -8.68268 -6.39925 -0.25701 0.12368 0.42842 0.98662 1.01134 1.35927 1.45519 1.52057 1.81212 2.00543 2.17984 2.62548 2.80939 3.27218 3.67062 3.67440 3.72635 3.75401 4.00947 4.25256 4.39975 4.47294 4.55591 4.79015 4.80699 4.89763 4.95443 5.04420 5.06601 5.15787 5.24301 5.29096 5.48032 5.57160 5.80600 5.88069 6.02179 6.12525 6.28278 6.57131 6.85698 6.89120 6.92557 7.24665 8.28485 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.003155 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.044530 B = 8873.666865 C =10261.857323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.150 4.150 3 C -0.035 4.035 4 C -0.117 4.117 5 Cl -0.048 7.048 6 C 0.122 3.878 7 N -0.509 5.509 8 C 0.341 3.659 9 N -0.643 5.643 10 C 0.551 3.449 11 O -0.520 6.520 12 C -0.139 4.139 13 C -0.197 4.197 14 C -0.092 4.092 15 C -0.214 4.214 16 C 0.067 3.933 17 C -0.495 4.495 18 H 0.085 0.915 19 C 0.029 3.971 20 N -0.825 5.825 21 Si 0.982 3.018 22 H -0.250 1.250 23 H -0.264 1.264 24 H -0.272 1.272 25 C -0.127 4.127 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.185 0.815 30 H 0.168 0.832 31 H 0.432 0.568 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.286 0.714 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 18.071 2.013 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.156 4.156 3 C -0.061 4.061 4 C -0.147 4.147 5 Cl -0.019 7.019 6 C -0.037 4.037 7 N -0.224 5.224 8 C 0.110 3.890 9 N -0.293 5.293 10 C 0.341 3.659 11 O -0.394 6.394 12 C -0.142 4.142 13 C -0.217 4.217 14 C -0.110 4.110 15 C -0.234 4.234 16 C 0.065 3.935 17 C -0.524 4.524 18 H 0.103 0.897 19 C -0.186 4.186 20 N -0.451 5.451 21 Si 0.802 3.198 22 H -0.173 1.173 23 H -0.189 1.189 24 H -0.197 1.197 25 C -0.148 4.148 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.202 0.798 30 H 0.185 0.815 31 H 0.275 0.725 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.854 17.339 1.855 18.394 hybrid contribution 0.497 -0.061 -0.075 0.506 sum -5.357 17.278 1.781 18.177 Atomic orbital electron populations 1.20874 0.86354 1.05006 1.04575 1.20641 0.99627 0.89850 1.05438 1.21566 0.91018 0.99495 0.94042 1.21997 0.93827 0.88692 1.10226 1.98364 1.73091 1.33398 1.97049 1.22826 1.01009 0.85317 0.94501 1.67771 1.07543 1.31002 1.16076 1.18840 0.88651 0.86457 0.95098 1.43550 1.11321 1.02587 1.71797 1.19071 0.87145 0.84515 0.75177 1.90793 1.15136 1.87323 1.46144 1.19660 0.95025 0.91040 1.08466 1.20867 0.90878 0.98740 1.11188 1.20946 0.99847 0.91590 0.98619 1.21451 0.93369 0.98096 1.10436 1.17944 0.92704 0.93013 0.89844 1.19894 0.99580 0.96223 1.36749 0.89653 1.26856 0.99510 1.00261 0.91984 1.69893 1.18415 1.34155 1.22633 0.85158 0.77628 0.77632 0.79333 1.17297 1.18875 1.19748 1.21422 0.99302 0.91452 1.02622 0.88682 0.87745 0.90949 0.79758 0.81495 0.72498 0.84229 0.83854 0.87133 0.90370 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.58 71.24 0.68 -0.62 16 2 C -0.15 -3.11 5.91 -19.65 -0.12 -3.23 16 3 C -0.04 -0.63 9.66 22.46 0.22 -0.41 16 4 C -0.12 -2.59 6.34 22.43 0.14 -2.45 16 5 Cl -0.05 -0.87 28.99 -2.72 -0.08 -0.95 16 6 C 0.12 3.56 10.98 84.68 0.93 4.49 16 7 N -0.51 -18.99 7.87 -192.97 -1.52 -20.51 16 8 C 0.34 10.74 7.41 132.91 0.98 11.73 16 9 N -0.64 -21.16 5.25 -311.05 -1.63 -22.79 16 10 C 0.55 24.75 7.74 86.79 0.67 25.42 16 11 O -0.52 -28.02 14.57 -3.86 -0.06 -28.08 16 12 C -0.14 -6.46 5.87 -20.14 -0.12 -6.58 16 13 C -0.20 -7.33 9.55 22.70 0.22 -7.11 16 14 C -0.09 -3.45 10.01 22.18 0.22 -3.23 16 15 C -0.21 -9.68 9.78 22.77 0.22 -9.46 16 16 C 0.07 3.61 5.57 -21.32 -0.12 3.49 16 17 C -0.50 -26.80 9.05 23.47 0.21 -26.59 16 18 H 0.09 4.35 7.90 -2.91 -0.02 4.33 16 19 C 0.03 1.51 5.14 85.25 0.44 1.95 16 20 N -0.83 -46.40 10.97 21.82 0.24 -46.16 16 21 Si 0.98 39.89 29.59 68.60 2.03 41.92 16 22 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 C -0.13 -7.05 8.23 23.01 0.19 -6.86 16 26 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.70 8.10 -2.39 -0.02 0.68 16 28 H 0.07 0.83 6.57 -2.39 -0.02 0.82 16 29 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.17 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.43 10.47 4.70 -92.71 -0.44 10.04 16 32 H 0.14 3.68 6.38 -2.91 -0.02 3.66 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.29 14.86 8.30 -92.70 -0.77 14.09 16 36 H 0.10 6.03 5.76 -2.91 -0.02 6.01 16 Total: -1.00 -73.95 327.45 4.47 -69.48 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.71 Total: 26.53 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.78 Total: -19.45 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.91 Total: -89.46 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.06 Total: -28.08 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -73.95 4.47 -69.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335784288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.971 kcal (2) G-P(sol) polarization free energy of solvation -73.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds