Wall clock time and date at job start Fri Apr 10 2020 23:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37981 * 120.05975 * 2 1 4 4 C 1.38315 * 120.16340 * 179.97438 * 3 2 1 5 5 C 1.38500 * 120.28238 * 359.97438 * 4 3 2 6 6 Cl 1.73605 * 119.94124 * 180.02562 * 5 4 3 7 7 C 1.38059 * 120.11821 * 359.76189 * 5 4 3 8 8 C 1.39572 * 120.06239 * 179.97438 * 2 1 3 9 9 C 1.47802 * 120.13859 * 0.02946 * 8 2 1 10 10 O 1.21549 * 120.00371 * 2.79348 * 9 8 2 11 11 N 1.34783 * 120.00159 * 182.80068 * 9 8 2 12 12 C 1.39380 * 120.00058 * 175.09325 * 11 9 8 13 13 C 1.38622 * 119.57595 * 174.47744 * 12 11 9 14 14 C 1.40812 * 118.79094 * 179.97438 * 13 12 11 15 15 C 1.41544 * 120.99435 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99650 * 212.37797 * 15 14 13 17 17 C 1.40031 * 120.00064 * 32.38508 * 15 14 13 18 18 N 1.30743 * 119.99930 * 6.40243 * 17 15 14 19 19 Si 1.86801 * 119.99943 * 186.39448 * 17 15 14 20 20 H 1.48499 * 109.46622 * 90.00292 * 19 17 15 21 21 H 1.48497 * 109.47179 * 209.99780 * 19 17 15 22 22 H 1.48501 * 109.47068 * 330.00509 * 19 17 15 23 23 C 1.41181 * 118.00691 * 0.02562 * 14 13 12 24 24 C 1.37582 * 119.02018 * 0.02562 * 23 14 13 25 25 N 1.32080 * 121.11416 * 359.97438 * 24 23 14 26 26 H 1.09006 * 109.47167 * 262.48420 * 1 2 3 27 27 H 1.09002 * 109.47282 * 22.48177 * 1 2 3 28 28 H 1.08996 * 109.47381 * 142.48595 * 1 2 3 29 29 H 1.08002 * 119.92075 * 359.97438 * 3 2 1 30 30 H 1.08005 * 119.86200 * 179.97438 * 4 3 2 31 31 H 1.07995 * 120.07842 * 180.25304 * 7 5 4 32 32 H 0.97006 * 119.99512 * 355.09105 * 11 9 8 33 33 H 1.08002 * 120.60928 * 0.02562 * 13 12 11 34 34 H 0.96997 * 119.99961 * 179.97438 * 18 17 15 35 35 H 1.07999 * 120.48611 * 180.02562 * 23 14 13 36 36 H 1.08001 * 119.44086 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1942 0.0000 4 6 3.5813 1.1967 0.0005 5 6 4.2818 0.0020 0.0016 6 17 6.0178 0.0155 0.0029 7 6 3.6021 -1.1997 0.0071 8 6 2.2061 -1.2080 0.0005 9 6 1.4716 -2.4906 0.0005 10 8 0.2572 -2.4955 -0.0514 11 7 2.1484 -3.6548 0.0580 12 6 1.4551 -4.8595 0.1612 13 6 2.1515 -6.0567 0.1040 14 6 1.4346 -7.2640 0.2105 15 6 2.0985 -8.5130 0.1575 16 1 1.6023 -9.3704 -0.2727 17 6 3.3984 -8.6370 0.6631 18 7 3.9521 -7.6356 1.2956 19 14 4.3414 -10.2331 0.4339 20 1 5.1076 -10.1772 -0.8369 21 1 5.2796 -10.4212 1.5695 22 1 3.3868 -11.3697 0.3868 23 6 0.0338 -7.1914 0.3705 24 6 -0.5697 -5.9558 0.4151 25 7 0.1389 -4.8460 0.3115 26 1 -0.3634 -0.1344 1.0189 27 1 -0.3634 0.9496 -0.3930 28 1 -0.3634 -0.8151 -0.6258 29 1 1.6578 2.1294 -0.0004 30 1 4.1173 2.1344 0.0001 31 1 4.1490 -2.1309 0.0121 32 1 3.1179 -3.6541 0.0276 33 1 3.2244 -6.0635 -0.0191 34 1 4.8524 -7.7216 1.6461 35 1 -0.5553 -8.0924 0.4566 36 1 -1.6408 -5.8922 0.5377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335923250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:15:32 Heat of formation + Delta-G solvation = 21.162171 kcal Electronic energy + Delta-G solvation = -22686.824023 eV Core-core repulsion = 19161.750506 eV Total energy + Delta-G solvation = -3525.073516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.41413 -38.91072 -37.63711 -36.58390 -34.56023 -33.88396 -32.35764 -31.57359 -30.54891 -28.63972 -26.90722 -26.00421 -24.12301 -22.29819 -22.04861 -21.07298 -19.89995 -17.94949 -17.66086 -16.14846 -16.08441 -15.47726 -15.17268 -15.07381 -14.91119 -14.26125 -14.04678 -13.74136 -13.64940 -13.59159 -12.92545 -12.85893 -12.62269 -12.35970 -12.22239 -11.93981 -11.51818 -11.44309 -11.28430 -11.26160 -11.13443 -10.94292 -10.31312 -10.17511 -9.80839 -9.41590 -9.30261 -9.23578 -8.69334 -7.98616 -7.80235 -7.10730 -6.77386 -4.65827 0.66890 0.98136 1.92783 2.51439 2.77090 3.01927 3.04852 3.06614 3.24323 3.46934 3.83630 3.86441 4.51267 4.56365 4.67817 4.78666 4.96060 5.11737 5.33081 5.49807 5.58990 5.65101 5.86573 5.88005 5.90033 5.97758 6.17143 6.40795 6.51078 6.57559 6.66060 6.74361 6.90428 7.08583 7.30589 7.39528 7.70572 7.88399 8.13728 8.36777 8.64407 8.72343 8.77000 9.58208 10.11800 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.003700 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.201855 B = 7565.861950 C = 9491.192568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.018 4.018 3 C -0.120 4.120 4 C -0.087 4.087 5 C -0.050 4.050 6 Cl -0.069 7.069 7 C -0.075 4.075 8 C -0.119 4.119 9 C 0.544 3.456 10 O -0.468 6.468 11 N -0.652 5.652 12 C 0.334 3.666 13 C -0.229 4.229 14 C 0.146 3.854 15 C -0.461 4.461 16 H 0.082 0.918 17 C 0.076 3.924 18 N -0.801 5.801 19 Si 0.915 3.085 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.276 4.276 24 C 0.117 3.883 25 N -0.549 5.549 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.407 0.593 33 H 0.127 0.873 34 H 0.281 0.719 35 H 0.104 0.896 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 14.432 -1.916 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.019 4.019 3 C -0.139 4.139 4 C -0.106 4.106 5 C -0.077 4.077 6 Cl -0.040 7.040 7 C -0.094 4.094 8 C -0.122 4.122 9 C 0.330 3.670 10 O -0.339 6.339 11 N -0.298 5.298 12 C 0.109 3.891 13 C -0.254 4.254 14 C 0.138 3.862 15 C -0.493 4.493 16 H 0.100 0.900 17 C -0.141 4.141 18 N -0.428 5.428 19 Si 0.740 3.260 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.300 4.300 24 C -0.038 4.038 25 N -0.268 5.268 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.126 0.874 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.243 0.757 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.242 15.364 -1.784 15.629 hybrid contribution 1.891 -1.532 0.073 2.435 sum 4.134 13.832 -1.710 14.537 Atomic orbital electron populations 1.21223 0.89398 1.03549 1.04313 1.20199 0.97493 0.91185 0.93071 1.21019 0.93156 0.97964 1.01719 1.21191 0.94268 0.96894 0.98256 1.20738 0.84786 0.94874 1.07301 1.98378 1.09656 1.98936 1.97061 1.21260 0.93257 0.97469 0.97452 1.19973 0.92572 0.94307 1.05369 1.18157 0.87601 0.83039 0.78247 1.90772 1.12446 1.85919 1.44804 1.43357 1.09930 1.04593 1.71875 1.18141 0.89484 0.83744 0.97694 1.21599 1.00831 0.90152 1.12858 1.17587 0.90502 0.92856 0.85279 1.19546 0.98271 0.95818 1.35649 0.90023 1.25905 0.97277 0.98339 0.92619 1.69724 1.14732 1.31798 1.26525 0.86196 0.79463 0.81650 0.78739 1.19282 1.20212 1.18563 1.22011 0.96226 0.97251 1.14491 1.21774 0.97824 0.87749 0.96431 1.67170 1.05348 1.31211 1.23100 0.90427 0.92416 0.87405 0.84493 0.84666 0.84448 0.75688 0.85481 0.90811 0.87788 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.85 36.00 0.32 -1.33 16 2 C -0.02 -0.24 5.91 -104.22 -0.62 -0.85 16 3 C -0.12 -1.22 9.66 -39.65 -0.38 -1.60 16 4 C -0.09 -0.86 9.82 -39.46 -0.39 -1.25 16 5 C -0.05 -0.58 6.31 -39.55 -0.25 -0.83 16 6 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 7 C -0.08 -0.96 9.32 -39.14 -0.36 -1.33 16 8 C -0.12 -1.75 5.87 -104.98 -0.62 -2.37 16 9 C 0.54 10.18 7.69 -12.35 -0.09 10.09 16 10 O -0.47 -10.02 11.52 5.32 0.06 -9.96 16 11 N -0.65 -12.72 5.33 -12.37 -0.07 -12.79 16 12 C 0.33 7.94 7.40 -154.77 -1.15 6.80 16 13 C -0.23 -5.71 8.56 -38.47 -0.33 -6.04 16 14 C 0.15 3.78 5.54 -106.55 -0.59 3.19 16 15 C -0.46 -11.73 9.11 -37.65 -0.34 -12.07 16 16 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 17 C 0.08 1.83 5.33 -17.34 -0.09 1.73 16 18 N -0.80 -19.71 10.94 55.55 0.61 -19.10 16 19 Si 0.92 17.97 29.56 -169.99 -5.03 12.94 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 C -0.28 -6.64 9.90 -38.70 -0.38 -7.02 16 24 C 0.12 2.72 11.15 -17.68 -0.20 2.53 16 25 N -0.55 -13.60 7.88 -12.54 -0.10 -13.70 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.57 8.03 -51.93 -0.42 0.15 16 28 H 0.11 1.68 5.65 -51.93 -0.29 1.39 16 29 H 0.14 1.00 8.05 -52.49 -0.42 0.58 16 30 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.14 1.63 6.41 -52.49 -0.34 1.29 16 32 H 0.41 6.69 6.74 -40.82 -0.28 6.42 16 33 H 0.13 3.16 6.46 -52.49 -0.34 2.82 16 34 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 35 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -29.48 325.76 -9.91 -39.39 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.32 Total: 10.89 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -5.48 Total: -10.35 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.44 Total: -45.58 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.06 Total: -9.96 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.48 -9.91 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335923250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.557 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds