Wall clock time and date at job start Fri Apr 10 2020 23:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47476 * 2 1 4 4 C 1.53000 * 109.47482 * 239.99504 * 2 1 3 5 5 C 1.50705 * 109.46837 * 60.00059 * 4 2 1 6 6 H 1.07994 * 119.99901 * 0.02562 * 5 4 2 7 7 C 1.37870 * 119.99961 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00130 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00330 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47051 * 59.99611 * 9 7 5 11 11 H 1.48494 * 109.47606 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46898 * 300.00150 * 9 7 5 13 13 C 1.53008 * 109.46820 * 119.99598 * 2 1 3 14 14 N 1.46493 * 109.47273 * 299.99911 * 13 2 1 15 15 C 1.34773 * 120.00370 * 180.02562 * 14 13 2 16 16 O 1.21609 * 119.99564 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00474 * 180.27365 * 15 14 13 18 18 C 1.40925 * 120.00154 * 174.30642 * 17 15 14 19 19 C 1.38803 * 122.62836 * 6.39417 * 18 17 15 20 20 C 1.33359 * 114.89611 * 179.75692 * 19 18 17 21 21 S 1.75860 * 109.71860 * 0.47563 * 20 19 18 22 22 C 1.33861 * 122.62888 * 186.67430 * 18 17 15 23 23 Cl 1.73609 * 125.20325 * 0.02704 * 22 18 17 24 24 H 1.09005 * 109.47168 * 300.00753 * 1 2 3 25 25 H 1.09002 * 109.47041 * 60.00205 * 1 2 3 26 26 H 1.08997 * 109.47433 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47417 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46818 * 299.99932 * 3 2 1 29 29 H 1.09005 * 109.47537 * 59.99473 * 3 2 1 30 30 H 1.08995 * 109.47481 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47011 * 300.00534 * 4 2 1 32 32 H 0.96994 * 120.00281 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46734 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.46970 * 59.99897 * 13 2 1 35 35 H 0.97001 * 119.99861 * 359.97438 * 14 13 2 36 36 H 0.97005 * 119.99768 * 354.31678 * 17 15 14 37 37 H 1.07997 * 122.54790 * 359.97438 * 19 18 17 38 38 H 1.07995 * 125.14197 * 180.20298 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9172 0.8673 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6265 -1.5516 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 1.7444 1.7982 -5.2573 11 1 1.7433 -0.3016 -6.4696 12 1 -0.2367 0.3996 -5.2571 13 6 2.0399 -0.7212 1.2494 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4906 3.6696 16 8 2.5774 -1.4788 3.7812 17 7 1.4237 0.1416 4.7700 18 6 1.6632 -0.4059 6.0463 19 6 2.4675 -1.5197 6.2440 20 6 2.5922 -1.9037 7.5150 21 16 1.6510 -0.8394 8.5514 22 6 1.1284 0.1042 7.1624 23 17 0.0789 1.4856 7.2285 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 -0.7217 -1.2489 31 1 1.6767 -1.7490 -1.2491 32 1 2.8609 -1.8831 -4.7334 33 1 3.1299 -0.7208 1.2496 34 1 1.6765 -1.7488 1.2494 35 1 0.9943 0.7583 2.3564 36 1 0.9322 0.9734 4.6834 37 1 2.9580 -2.0339 5.4307 38 1 3.1787 -2.7440 7.8558 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351533275.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:21 Heat of formation + Delta-G solvation = -6.884962 kcal Electronic energy + Delta-G solvation = -21486.953492 eV Core-core repulsion = 18096.107712 eV Total energy + Delta-G solvation = -3390.845780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74202 -38.38817 -37.14106 -36.65715 -34.27775 -33.44983 -32.05110 -29.11908 -27.16326 -26.56828 -26.23266 -23.94728 -22.98665 -21.49172 -19.95892 -18.90972 -18.04871 -17.94300 -16.52468 -16.18440 -15.77230 -15.41484 -14.53915 -14.29068 -14.24513 -13.94645 -13.88871 -13.62293 -13.25330 -13.11764 -12.81734 -12.32448 -12.09139 -11.88749 -11.49859 -11.24369 -11.05731 -11.04370 -10.90204 -10.74732 -10.66515 -10.46037 -10.30862 -9.93426 -9.91191 -9.26124 -8.98462 -8.95168 -8.81809 -8.38614 -8.04955 -6.02806 -4.04418 0.58203 0.92382 1.52578 1.98915 2.34322 2.65704 3.23707 3.29983 3.35731 3.36741 4.07640 4.42827 4.79256 4.94053 5.32617 5.36935 5.50470 5.56274 5.68297 5.74080 5.93080 6.10636 6.14037 6.17791 6.33067 6.38913 6.53553 6.57791 6.70564 6.78778 7.00245 7.02328 7.07092 7.59856 7.71787 7.84448 7.95439 8.36361 8.45337 9.00032 9.58903 11.08596 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.032544 B = 0.002467 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.167924 B =11346.596946 C =12002.581609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.144 3.856 14 N -0.726 5.726 15 C 0.704 3.296 16 O -0.572 6.572 17 N -0.671 5.671 18 C 0.195 3.805 19 C -0.145 4.145 20 C -0.190 4.190 21 S 0.143 5.857 22 C -0.223 4.223 23 Cl -0.018 7.018 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.409 0.591 37 H 0.195 0.805 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.318 4.128 23.755 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.021 3.979 14 N -0.381 5.381 15 C 0.404 3.596 16 O -0.450 6.450 17 N -0.318 5.318 18 C 0.084 3.916 19 C -0.176 4.176 20 C -0.327 4.327 21 S 0.402 5.598 22 C -0.371 4.371 23 Cl 0.010 6.990 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.245 0.755 37 H 0.212 0.788 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.966 3.307 25.117 25.507 hybrid contribution -0.712 1.350 -2.487 2.919 sum -3.679 4.658 22.630 23.395 Atomic orbital electron populations 1.21766 0.95209 1.01250 1.00231 1.20933 0.95536 0.95909 0.94919 1.21768 1.00620 0.95840 1.00231 1.19083 0.96406 0.95244 0.89326 1.21129 1.31361 1.12105 0.90505 0.92313 1.25004 0.95283 0.95065 0.99079 1.69947 1.36808 1.22977 1.23613 0.86710 0.79144 0.79768 0.82667 1.20330 1.21377 1.20323 1.21625 0.98954 0.95806 0.81471 1.45433 1.55276 1.33104 1.04248 1.15939 0.80388 0.82861 0.80395 1.90709 1.41943 1.27473 1.84831 1.42649 1.58931 1.27251 1.02922 1.16567 0.96898 0.94778 0.83332 1.21019 1.00678 0.96880 0.99040 1.25759 1.05833 1.04945 0.96118 1.84191 1.46012 1.22937 1.06668 1.24442 1.11805 1.02888 0.97924 1.98340 1.63724 1.38841 1.98069 0.95345 0.91358 0.93265 0.93263 0.91350 0.95359 0.96259 0.96258 0.92938 0.91543 0.91531 0.76753 0.75528 0.78837 0.80730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.15 0.30 -1.84 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.30 7.65 -34.44 -0.26 -13.56 16 6 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.14 2.40 4.56 -4.04 -0.02 2.38 16 14 N -0.73 -9.88 4.96 -65.22 -0.32 -10.20 16 15 C 0.70 10.12 8.53 -86.92 -0.74 9.38 16 16 O -0.57 -9.88 13.06 5.27 0.07 -9.81 16 17 N -0.67 -7.87 5.45 -15.14 -0.08 -7.96 16 18 C 0.20 2.34 6.55 -85.00 -0.56 1.78 16 19 C -0.15 -1.75 9.11 -41.08 -0.37 -2.12 16 20 C -0.19 -1.77 11.22 29.03 0.33 -1.44 16 21 S 0.14 1.26 23.33 -107.50 -2.51 -1.25 16 22 C -0.22 -2.36 7.11 29.20 0.21 -2.15 16 23 Cl -0.02 -0.17 28.53 -51.86 -1.48 -1.65 16 24 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 25 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 29 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.40 4.51 6.18 -40.82 -0.25 4.26 16 36 H 0.41 3.84 8.07 -40.82 -0.33 3.51 16 37 H 0.20 2.72 5.15 -52.68 -0.27 2.45 16 38 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -29.54 337.60 -9.28 -38.82 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.65 Total: 4.93 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.12 Total: -8.56 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.33 Total: -43.44 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.51 Total: -1.25 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.48 Total: -1.65 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.54 -9.28 -38.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351533275.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.937 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds