Wall clock time and date at job start Fri Apr 10 2020 23:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46957 * 2 1 4 4 N 1.46900 * 109.47128 * 119.99994 * 2 1 3 5 5 C 1.46904 * 110.99901 * 293.04038 * 4 2 1 6 6 C 1.50704 * 109.46816 * 75.94194 * 5 4 2 7 7 H 1.07999 * 119.99676 * 358.87987 * 6 5 4 8 8 C 1.37875 * 119.99996 * 178.88173 * 6 5 4 9 9 N 1.31517 * 119.99808 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99931 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47562 * 59.99867 * 10 8 6 12 12 H 1.48506 * 109.47270 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47095 * 299.99751 * 10 8 6 14 14 C 1.46905 * 110.99844 * 169.09459 * 4 2 1 15 15 C 1.50701 * 109.46574 * 287.21229 * 14 4 2 16 16 C 1.38163 * 120.02724 * 267.63394 * 15 14 4 17 17 C 1.38350 * 120.08455 * 180.02562 * 16 15 14 18 18 Cl 1.73600 * 119.93687 * 179.97438 * 17 16 15 19 19 C 1.38404 * 120.12609 * 359.97438 * 17 16 15 20 20 C 1.38173 * 120.05078 * 359.70917 * 19 17 16 21 21 Cl 1.73604 * 120.04215 * 180.27164 * 20 19 17 22 22 C 1.38822 * 120.02551 * 87.65674 * 15 14 4 23 23 N 1.39820 * 120.06514 * 359.95651 * 22 15 14 24 24 H 1.08998 * 109.47054 * 310.32202 * 1 2 3 25 25 H 1.08997 * 109.47097 * 70.31912 * 1 2 3 26 26 H 1.08999 * 109.46956 * 190.32093 * 1 2 3 27 27 H 1.08992 * 109.47104 * 240.00284 * 2 1 3 28 28 H 1.08997 * 109.47041 * 170.83209 * 3 2 1 29 29 H 1.09000 * 109.46758 * 290.83794 * 3 2 1 30 30 H 1.09003 * 109.46771 * 50.83142 * 3 2 1 31 31 H 1.09004 * 109.47086 * 195.93651 * 5 4 2 32 32 H 1.08999 * 109.47540 * 315.94104 * 5 4 2 33 33 H 0.97004 * 119.99679 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47140 * 167.21790 * 14 4 2 35 35 H 1.08995 * 109.47383 * 47.21056 * 14 4 2 36 36 H 1.08000 * 119.96107 * 0.02562 * 16 15 14 37 37 H 1.08004 * 119.97732 * 179.97438 * 19 17 16 38 38 H 0.97003 * 119.99592 * 0.33196 * 23 22 15 39 39 H 0.97001 * 120.00065 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6891 0.0629 2.4153 6 6 0.2272 -0.1150 2.7352 7 1 -0.3981 -0.7132 2.0889 8 6 -0.3120 0.4858 3.8528 9 7 0.4496 1.2138 4.6401 10 14 -2.1242 0.2658 4.2490 11 1 -2.4175 -1.1772 4.4407 12 1 -2.4527 1.0078 5.4928 13 1 -2.9434 0.7927 3.1280 14 6 3.4648 -0.9409 1.1108 15 6 3.7254 -2.0378 0.1107 16 6 3.8070 -3.3514 0.5310 17 6 4.0467 -4.3593 -0.3860 18 17 4.1490 -6.0085 0.1463 19 6 4.2050 -4.0552 -1.7269 20 6 4.1181 -2.7440 -2.1540 21 17 4.3097 -2.3637 -3.8370 22 6 3.8842 -1.7290 -1.2334 23 7 3.8018 -0.4005 -1.6614 24 1 -0.3633 0.6650 0.7835 25 1 -0.3633 0.3461 -0.9676 26 1 -0.3633 -1.0110 0.1841 27 1 1.8933 -0.5138 -0.8899 28 1 3.1176 1.4470 0.1637 29 1 1.8164 1.9070 -0.9605 30 1 1.5491 2.0015 0.7968 31 1 2.2903 -0.3054 3.2466 32 1 1.8998 1.1202 2.2548 33 1 0.0703 1.6362 5.4266 34 1 3.8423 -1.2428 2.0878 35 1 3.9712 -0.0301 0.7912 36 1 3.6834 -3.5919 1.5766 37 1 4.3925 -4.8439 -2.4406 38 1 3.6383 0.3070 -1.0182 39 1 3.9125 -0.1859 -2.6009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385708701.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:36 Heat of formation + Delta-G solvation = 25.533864 kcal Electronic energy + Delta-G solvation = -22635.831171 eV Core-core repulsion = 19244.347470 eV Total energy + Delta-G solvation = -3391.483701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11340 -37.76541 -36.71370 -36.17253 -34.38073 -32.68835 -32.22798 -30.16230 -28.47216 -27.67665 -26.31401 -24.79497 -22.59907 -22.15940 -21.27572 -18.73464 -17.44534 -17.32764 -16.54086 -15.96463 -15.56574 -14.76918 -14.55124 -14.46494 -14.19030 -13.80606 -13.63633 -13.22327 -12.57448 -12.36721 -12.35518 -12.16461 -11.76219 -11.64029 -11.52946 -11.37586 -11.13148 -11.06794 -10.86916 -10.79219 -10.73298 -10.64850 -10.40268 -10.30463 -10.04128 -9.44535 -9.06033 -8.72292 -8.39430 -7.50164 -7.27833 -6.02629 -4.00392 1.17247 1.32891 1.93165 2.42146 3.32694 3.37452 3.40412 3.56978 3.78187 4.42256 4.66106 4.93951 5.09346 5.19301 5.22968 5.32217 5.50810 5.58880 5.67269 5.71301 5.85331 5.90780 6.03310 6.14000 6.19051 6.38909 6.44993 6.52103 6.60488 6.63075 6.89166 7.15163 7.28958 7.33441 7.39255 7.65188 7.82710 8.09223 8.16465 8.51829 9.04826 9.60855 11.07818 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.004208 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.835198 B = 6651.642699 C = 7790.083334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 C -0.191 4.191 4 N -0.522 5.522 5 C 0.185 3.815 6 C -0.501 4.501 7 H 0.073 0.927 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.093 3.907 15 C -0.114 4.114 16 C -0.036 4.036 17 C -0.082 4.082 18 Cl -0.076 7.076 19 C -0.061 4.061 20 C -0.109 4.109 21 Cl -0.072 7.072 22 C 0.240 3.760 23 N -0.869 5.869 24 H 0.088 0.912 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.084 0.916 35 H 0.032 0.968 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.408 0.592 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 -6.069 -13.569 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.036 4.036 3 C -0.249 4.249 4 N -0.246 5.246 5 C 0.060 3.940 6 C -0.539 4.539 7 H 0.091 0.909 8 C -0.147 4.147 9 N -0.541 5.541 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.035 4.035 15 C -0.120 4.120 16 C -0.056 4.056 17 C -0.111 4.111 18 Cl -0.047 7.047 19 C -0.081 4.081 20 C -0.141 4.141 21 Cl -0.044 7.044 22 C 0.132 3.868 23 N -0.414 5.414 24 H 0.107 0.893 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.022 0.978 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.244 0.756 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 8.906 -6.505 -13.436 17.383 hybrid contribution -0.552 0.951 0.025 1.100 sum 8.354 -5.554 -13.411 16.748 Atomic orbital electron populations 1.22097 0.94218 1.03181 1.00214 1.21843 0.96976 0.91095 0.93726 1.22570 0.99807 1.00303 1.02268 1.62465 1.09032 1.49174 1.03903 1.19907 0.97211 0.91611 0.85240 1.21358 0.94093 1.29892 1.08575 0.90922 1.24971 0.97860 0.95671 0.96222 1.69945 1.35548 1.33461 1.15134 0.86646 0.85437 0.78296 0.77564 1.20216 1.21526 1.20317 1.20937 0.91820 0.93602 0.97149 1.19357 1.05576 0.95397 0.91687 1.20823 0.94588 0.90196 0.99984 1.20343 1.11693 0.85694 0.93386 1.98345 1.97134 1.18733 1.90485 1.20509 0.98648 0.94559 0.94361 1.19995 1.16227 0.93399 0.84453 1.98326 1.96483 1.94429 1.15159 1.17371 0.92922 0.84875 0.91602 1.43336 1.80741 1.04911 1.12396 0.89348 0.95313 0.92453 0.90682 0.93891 0.93222 0.90257 0.95603 0.97782 0.93016 0.89725 0.94989 0.84193 0.84520 0.75554 0.77324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 7.70 37.16 0.29 -2.35 16 2 C 0.07 1.27 2.37 -67.71 -0.16 1.11 16 3 C -0.19 -3.05 7.15 37.16 0.27 -2.78 16 4 N -0.52 -10.15 4.40 -229.50 -1.01 -11.16 16 5 C 0.18 4.38 4.51 -4.97 -0.02 4.36 16 6 C -0.50 -13.03 6.89 -34.44 -0.24 -13.26 16 7 H 0.07 1.88 5.46 -52.49 -0.29 1.59 16 8 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 9 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 10 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.09 1.53 4.84 -4.97 -0.02 1.50 16 15 C -0.11 -1.69 5.15 -104.43 -0.54 -2.23 16 16 C -0.04 -0.51 9.47 -39.57 -0.37 -0.88 16 17 C -0.08 -1.08 6.32 -39.48 -0.25 -1.33 16 18 Cl -0.08 -0.92 28.95 -51.86 -1.50 -2.42 16 19 C -0.06 -0.75 9.60 -39.54 -0.38 -1.13 16 20 C -0.11 -1.38 6.34 -39.32 -0.25 -1.63 16 21 Cl -0.07 -0.79 27.59 -51.86 -1.43 -2.22 16 22 C 0.24 3.25 5.79 -83.71 -0.48 2.76 16 23 N -0.87 -10.39 7.36 32.44 0.24 -10.15 16 24 H 0.09 1.90 5.78 -51.93 -0.30 1.60 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 1.14 7.39 -51.93 -0.38 0.75 16 27 H 0.08 1.22 4.58 -51.93 -0.24 0.99 16 28 H 0.04 0.63 5.17 -51.93 -0.27 0.36 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.50 6.44 -51.93 -0.33 1.16 16 31 H 0.03 0.67 7.63 -51.93 -0.40 0.27 16 32 H 0.00 0.11 5.56 -51.93 -0.29 -0.18 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.08 1.40 7.59 -51.93 -0.39 1.01 16 35 H 0.03 0.50 5.12 -51.93 -0.27 0.23 16 36 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.41 5.05 3.17 -40.82 -0.13 4.92 16 39 H 0.40 4.09 7.51 -40.82 -0.31 3.78 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -27.13 326.17 -9.76 -36.89 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.42 Total: 7.54 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.27 Total: -14.50 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.04 Total: -46.21 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -2.93 Total: -4.65 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.13 -9.76 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385708701.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.425 kcal (2) G-P(sol) polarization free energy of solvation -27.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds