Wall clock time and date at job start Fri Apr 10 2020 23:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46957 * 2 1 4 4 N 1.46900 * 109.47128 * 119.99994 * 2 1 3 5 5 C 1.46904 * 110.99901 * 293.04038 * 4 2 1 6 6 C 1.50704 * 109.46816 * 75.94194 * 5 4 2 7 7 H 1.07999 * 119.99676 * 358.87987 * 6 5 4 8 8 C 1.37875 * 119.99996 * 178.88173 * 6 5 4 9 9 N 1.31517 * 119.99808 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99931 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47562 * 59.99867 * 10 8 6 12 12 H 1.48506 * 109.47270 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47095 * 299.99751 * 10 8 6 14 14 C 1.46905 * 110.99844 * 169.09459 * 4 2 1 15 15 C 1.50701 * 109.46574 * 287.21229 * 14 4 2 16 16 C 1.38163 * 120.02724 * 267.63394 * 15 14 4 17 17 C 1.38350 * 120.08455 * 180.02562 * 16 15 14 18 18 Cl 1.73600 * 119.93687 * 179.97438 * 17 16 15 19 19 C 1.38404 * 120.12609 * 359.97438 * 17 16 15 20 20 C 1.38173 * 120.05078 * 359.70917 * 19 17 16 21 21 Cl 1.73604 * 120.04215 * 180.27164 * 20 19 17 22 22 C 1.38822 * 120.02551 * 87.65674 * 15 14 4 23 23 N 1.39820 * 120.06514 * 359.95651 * 22 15 14 24 24 H 1.08998 * 109.47054 * 310.32202 * 1 2 3 25 25 H 1.08997 * 109.47097 * 70.31912 * 1 2 3 26 26 H 1.08999 * 109.46956 * 190.32093 * 1 2 3 27 27 H 1.08992 * 109.47104 * 240.00284 * 2 1 3 28 28 H 1.08997 * 109.47041 * 170.83209 * 3 2 1 29 29 H 1.09000 * 109.46758 * 290.83794 * 3 2 1 30 30 H 1.09003 * 109.46771 * 50.83142 * 3 2 1 31 31 H 1.09004 * 109.47086 * 195.93651 * 5 4 2 32 32 H 1.08999 * 109.47540 * 315.94104 * 5 4 2 33 33 H 0.97004 * 119.99679 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47140 * 167.21790 * 14 4 2 35 35 H 1.08995 * 109.47383 * 47.21056 * 14 4 2 36 36 H 1.08000 * 119.96107 * 0.02562 * 16 15 14 37 37 H 1.08004 * 119.97732 * 179.97438 * 19 17 16 38 38 H 0.97003 * 119.99592 * 0.33196 * 23 22 15 39 39 H 0.97001 * 120.00065 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6891 0.0629 2.4153 6 6 0.2272 -0.1150 2.7352 7 1 -0.3981 -0.7132 2.0889 8 6 -0.3120 0.4858 3.8528 9 7 0.4496 1.2138 4.6401 10 14 -2.1242 0.2658 4.2490 11 1 -2.4175 -1.1772 4.4407 12 1 -2.4527 1.0078 5.4928 13 1 -2.9434 0.7927 3.1280 14 6 3.4648 -0.9409 1.1108 15 6 3.7254 -2.0378 0.1107 16 6 3.8070 -3.3514 0.5310 17 6 4.0467 -4.3593 -0.3860 18 17 4.1490 -6.0085 0.1463 19 6 4.2050 -4.0552 -1.7269 20 6 4.1181 -2.7440 -2.1540 21 17 4.3097 -2.3637 -3.8370 22 6 3.8842 -1.7290 -1.2334 23 7 3.8018 -0.4005 -1.6614 24 1 -0.3633 0.6650 0.7835 25 1 -0.3633 0.3461 -0.9676 26 1 -0.3633 -1.0110 0.1841 27 1 1.8933 -0.5138 -0.8899 28 1 3.1176 1.4470 0.1637 29 1 1.8164 1.9070 -0.9605 30 1 1.5491 2.0015 0.7968 31 1 2.2903 -0.3054 3.2466 32 1 1.8998 1.1202 2.2548 33 1 0.0703 1.6362 5.4266 34 1 3.8423 -1.2428 2.0878 35 1 3.9712 -0.0301 0.7912 36 1 3.6834 -3.5919 1.5766 37 1 4.3925 -4.8439 -2.4406 38 1 3.6383 0.3070 -1.0182 39 1 3.9125 -0.1859 -2.6009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385708701.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:36 Heat of formation + Delta-G solvation = 10.463958 kcal Electronic energy + Delta-G solvation = -22636.484651 eV Core-core repulsion = 19244.347470 eV Total energy + Delta-G solvation = -3392.137181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25347 -39.12683 -37.67296 -37.19430 -35.46705 -34.58993 -33.52957 -31.54384 -29.67091 -29.25235 -27.77934 -26.24916 -24.10976 -23.52996 -22.42081 -20.21624 -18.55455 -18.47693 -18.24697 -17.14976 -17.02194 -16.52775 -15.72419 -15.62717 -15.48220 -15.05048 -14.91441 -14.61951 -14.14386 -13.72025 -13.57769 -13.36780 -13.17750 -13.07056 -12.79064 -12.73008 -12.71262 -12.53342 -12.34224 -12.29546 -12.01479 -11.89032 -11.85074 -11.77817 -11.38198 -11.07192 -10.80759 -10.45974 -9.78702 -8.87440 -8.51021 -8.09267 -6.12680 0.12266 0.28843 0.95712 1.42891 1.43996 1.45346 1.52419 2.43415 2.52235 2.78758 3.22838 3.43601 3.63716 3.99757 4.05046 4.14362 4.17429 4.32563 4.36001 4.55771 4.63275 4.75348 4.80034 4.86720 4.96755 5.04012 5.12242 5.13587 5.26305 5.32840 5.36715 5.52154 5.60185 5.73925 5.81404 6.19690 6.28104 6.50914 6.71844 6.73265 6.99899 7.52317 9.00264 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.004208 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.835198 B = 6651.642699 C = 7790.083334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.073 3.927 3 C -0.182 4.182 4 N -0.531 5.531 5 C 0.200 3.800 6 C -0.501 4.501 7 H 0.072 0.928 8 C 0.002 3.998 9 N -0.936 5.936 10 Si 0.951 3.049 11 H -0.274 1.274 12 H -0.289 1.289 13 H -0.269 1.269 14 C 0.097 3.903 15 C -0.130 4.130 16 C -0.044 4.044 17 C -0.087 4.087 18 Cl -0.069 7.069 19 C -0.053 4.053 20 C -0.111 4.111 21 Cl -0.054 7.054 22 C 0.239 3.761 23 N -0.863 5.863 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.045 0.955 31 H -0.004 1.004 32 H -0.010 1.010 33 H 0.259 0.741 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.135 0.865 37 H 0.157 0.843 38 H 0.407 0.593 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.201 -6.726 -15.950 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.036 4.036 3 C -0.241 4.241 4 N -0.255 5.255 5 C 0.074 3.926 6 C -0.540 4.540 7 H 0.090 0.910 8 C -0.195 4.195 9 N -0.578 5.578 10 Si 0.777 3.223 11 H -0.199 1.199 12 H -0.215 1.215 13 H -0.194 1.194 14 C -0.031 4.031 15 C -0.136 4.136 16 C -0.064 4.064 17 C -0.116 4.116 18 Cl -0.040 7.040 19 C -0.073 4.073 20 C -0.143 4.143 21 Cl -0.025 7.025 22 C 0.130 3.870 23 N -0.408 5.408 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.014 0.986 32 H 0.007 0.993 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.152 0.848 37 H 0.175 0.825 38 H 0.242 0.758 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 8.973 -7.168 -15.855 19.577 hybrid contribution -0.507 1.103 0.658 1.381 sum 8.466 -6.065 -15.197 18.423 Atomic orbital electron populations 1.22002 0.95227 1.01497 1.00660 1.21919 0.96156 0.92136 0.93343 1.22449 1.00164 0.98857 1.02599 1.62345 1.11406 1.48645 1.03098 1.19542 0.95627 0.91032 0.86356 1.21675 0.95268 1.28883 1.08148 0.90999 1.25715 1.01704 0.95686 0.96370 1.70067 1.37206 1.34828 1.15711 0.85707 0.80989 0.78163 0.77401 1.19925 1.21522 1.19382 1.20869 0.89864 0.94817 0.97552 1.19134 1.07594 0.94921 0.91943 1.20848 0.94900 0.90511 1.00115 1.20367 1.11793 0.85837 0.93639 1.98347 1.97104 1.18030 1.90515 1.20752 0.97224 0.95052 0.94281 1.20057 1.15648 0.93259 0.85360 1.98336 1.96355 1.94337 1.13475 1.17380 0.92739 0.85662 0.91206 1.43288 1.80264 1.04265 1.12939 0.92423 0.92467 0.93917 0.88688 0.92663 0.90244 0.93639 0.98561 0.99261 0.93221 0.90777 0.93923 0.84754 0.82524 0.75777 0.76172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 7.70 71.98 0.55 -4.47 16 2 C 0.07 2.47 2.37 44.92 0.11 2.58 16 3 C -0.18 -5.61 7.15 71.99 0.51 -5.10 16 4 N -0.53 -20.81 4.40 -880.02 -3.88 -24.68 16 5 C 0.20 9.82 4.51 85.56 0.39 10.20 16 6 C -0.50 -26.68 6.89 25.60 0.18 -26.50 16 7 H 0.07 3.77 5.46 -2.91 -0.02 3.76 16 8 C 0.00 0.13 5.46 84.65 0.46 0.59 16 9 N -0.94 -54.77 13.29 21.45 0.28 -54.49 16 10 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 C 0.10 3.18 4.84 85.56 0.41 3.59 16 15 C -0.13 -3.72 5.15 -19.74 -0.10 -3.82 16 16 C -0.04 -1.21 9.47 22.28 0.21 -1.00 16 17 C -0.09 -2.16 6.32 22.34 0.14 -2.02 16 18 Cl -0.07 -1.58 28.95 -2.72 -0.08 -1.66 16 19 C -0.05 -1.18 9.60 22.29 0.21 -0.96 16 20 C -0.11 -2.52 6.34 22.44 0.14 -2.38 16 21 Cl -0.05 -1.01 27.59 -2.72 -0.08 -1.09 16 22 C 0.24 5.95 5.79 38.19 0.22 6.17 16 23 N -0.86 -18.40 7.36 -51.27 -0.38 -18.77 16 24 H 0.06 2.48 5.78 -2.39 -0.01 2.46 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.04 1.67 7.39 -2.39 -0.02 1.65 16 27 H 0.10 2.88 4.58 -2.39 -0.01 2.87 16 28 H 0.05 1.55 5.17 -2.39 -0.01 1.54 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.73 6.44 -2.39 -0.02 1.71 16 31 H 0.00 -0.20 7.63 -2.39 -0.02 -0.22 16 32 H -0.01 -0.53 5.56 -2.39 -0.01 -0.54 16 33 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 34 H 0.07 2.55 7.59 -2.38 -0.02 2.53 16 35 H 0.04 1.30 5.12 -2.39 -0.01 1.28 16 36 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 37 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.41 9.10 3.17 -92.71 -0.29 8.81 16 39 H 0.41 7.11 7.51 -92.71 -0.70 6.41 16 Total: -1.00 -58.66 326.17 1.47 -57.19 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.13 Total: 20.90 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 3.44 Total: -23.12 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -3.97 Total: -97.94 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -0.15 Total: -2.74 kcal Total: -58.66 1.47 -57.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385708701.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.651 kcal (2) G-P(sol) polarization free energy of solvation -58.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds