Wall clock time and date at job start Fri Apr 10 2020 23:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46904 * 110.99795 * 2 1 4 4 C 1.50702 * 109.47028 * 66.04375 * 3 2 1 5 5 H 1.07989 * 120.00232 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99438 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00276 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99488 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47436 * 90.00039 * 8 6 4 10 10 H 1.48501 * 109.46860 * 209.99895 * 8 6 4 11 11 H 1.48503 * 109.47278 * 329.99830 * 8 6 4 12 12 C 1.46902 * 111.00071 * 236.04847 * 2 1 3 13 13 C 1.53000 * 109.46751 * 199.83123 * 12 2 1 14 14 H 1.09002 * 109.46963 * 300.49792 * 13 12 2 15 15 O 1.42893 * 109.47380 * 60.50381 * 13 12 2 16 16 C 1.53007 * 109.46647 * 180.50106 * 13 12 2 17 17 S 1.81401 * 109.46563 * 179.97438 * 16 13 12 18 18 C 1.76202 * 102.99484 * 180.02562 * 17 16 13 19 19 C 1.39190 * 119.69486 * 179.97438 * 18 17 16 20 20 C 1.38273 * 119.10609 * 179.97438 * 19 18 17 21 21 C 1.38996 * 118.50185 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 120.34264 * 179.97438 * 21 20 19 23 23 C 1.38133 * 119.31512 * 0.02562 * 21 20 19 24 24 N 1.31971 * 120.84513 * 359.73586 * 23 21 20 25 25 H 1.08996 * 109.46746 * 178.41273 * 1 2 3 26 26 H 1.08999 * 109.46872 * 298.41620 * 1 2 3 27 27 H 1.08997 * 109.46723 * 58.41819 * 1 2 3 28 28 H 1.08997 * 109.47134 * 186.04933 * 3 2 1 29 29 H 1.09002 * 109.47069 * 306.04511 * 3 2 1 30 30 H 0.97005 * 119.99921 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.46608 * 319.82896 * 12 2 1 32 32 H 1.09001 * 109.47150 * 79.82838 * 12 2 1 33 33 H 0.96699 * 114.00248 * 59.99565 * 15 13 12 34 34 H 1.08992 * 109.47189 * 299.99651 * 16 13 12 35 35 H 1.08992 * 109.47114 * 60.00178 * 16 13 12 36 36 H 1.07996 * 120.44724 * 359.95165 * 19 18 17 37 37 H 1.08002 * 120.74874 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.57489 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 2.7119 4.0020 0.6149 8 14 1.5829 4.1869 3.1381 9 1 2.6603 3.9509 4.1325 10 1 1.4299 5.6465 2.9111 11 1 0.3055 3.6291 3.6505 12 6 1.9955 -0.7659 -1.1376 13 6 3.4451 -1.1661 -0.8558 14 1 4.0462 -0.2699 -0.7024 15 8 3.4951 -1.9799 0.3178 16 6 3.9974 -1.9532 -2.0460 17 16 5.7164 -2.4270 -1.7121 18 6 6.1744 -3.3080 -3.1677 19 6 7.4571 -3.8369 -3.2787 20 6 7.8033 -4.5266 -4.4261 21 6 6.8512 -4.6658 -5.4291 22 17 7.2348 -5.5218 -6.8898 23 6 5.5968 -4.1150 -5.2520 24 7 5.2932 -3.4658 -4.1438 25 1 -0.3633 -1.0272 -0.0285 26 1 -0.3633 0.4890 0.9038 27 1 -0.3633 0.5382 -0.8755 28 1 3.0797 1.3445 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 2.9858 4.9184 0.7765 31 1 1.3926 -1.6624 -1.2821 32 1 1.9563 -0.1526 -2.0379 33 1 2.9812 -2.7964 0.2524 34 1 3.3964 -2.8494 -2.1994 35 1 3.9594 -1.3325 -2.9411 36 1 8.1723 -3.7101 -2.4796 37 1 8.7911 -4.9483 -4.5400 38 1 4.8536 -4.2210 -6.0285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414107779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:42 Heat of formation + Delta-G solvation = -19.588634 kcal Electronic energy + Delta-G solvation = -20810.656076 eV Core-core repulsion = 17419.259423 eV Total energy + Delta-G solvation = -3391.396653 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37380 -37.98482 -37.00517 -35.52300 -32.95110 -32.49617 -31.45936 -31.02312 -27.45711 -26.78516 -24.21939 -24.16908 -23.60379 -21.82633 -20.14622 -18.46566 -17.05224 -16.97904 -16.52723 -16.07130 -15.61772 -15.09119 -14.83041 -14.77814 -14.65461 -14.27728 -13.78301 -13.56210 -13.34243 -12.87933 -12.69278 -12.43320 -12.19440 -11.93536 -11.62271 -11.46885 -11.21321 -11.07030 -10.93267 -10.62029 -10.49852 -10.31204 -10.29295 -10.03057 -9.92391 -9.82614 -9.72723 -9.15528 -8.41251 -7.69457 -7.24145 -6.01134 -4.01707 0.41610 0.74004 1.20496 1.67820 2.14720 3.16191 3.34433 3.40069 3.43547 4.08458 4.31362 4.41431 4.52627 4.55591 4.58513 4.70896 5.06608 5.19490 5.28696 5.35407 5.38136 5.44874 5.46913 5.61630 5.66684 5.94184 5.99559 6.06795 6.32098 6.33615 6.70668 7.24958 7.25804 7.30164 7.79601 7.99774 8.07916 8.18934 8.54453 9.05419 9.62214 11.09989 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.002272 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.478880 B =12319.904854 C =12592.179035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.032 3.968 13 C 0.128 3.872 14 H 0.112 0.888 15 O -0.533 6.533 16 C -0.134 4.134 17 S -0.023 6.023 18 C 0.118 3.882 19 C -0.143 4.143 20 C -0.048 4.048 21 C -0.106 4.106 22 Cl -0.059 7.059 23 C 0.133 3.867 24 N -0.479 5.479 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.011 0.989 28 H 0.031 0.969 29 H -0.010 1.010 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.365 0.635 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.227 -19.337 -13.026 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.099 4.099 13 C 0.066 3.934 14 H 0.130 0.870 15 O -0.336 6.336 16 C -0.284 4.284 17 S 0.221 5.779 18 C -0.131 4.131 19 C -0.169 4.169 20 C -0.075 4.075 21 C -0.139 4.139 22 Cl -0.030 7.030 23 C -0.028 4.028 24 N -0.192 5.192 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.049 0.951 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.211 0.789 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.612 -18.293 -11.351 23.187 hybrid contribution -0.646 -0.175 -1.773 1.895 sum 7.966 -18.468 -13.124 24.016 Atomic orbital electron populations 1.22201 0.88605 0.98943 1.01044 1.62022 1.06675 1.17889 1.38938 1.19799 0.95448 0.81406 0.96681 1.21140 1.34720 0.96786 1.01639 0.91840 1.24990 0.95344 0.97382 0.96987 1.69953 1.38503 1.11458 1.34048 0.86491 0.78869 0.78328 0.83674 1.20578 1.21389 1.19893 1.22621 0.94883 0.98439 0.93941 1.21720 0.96196 0.93178 0.82278 0.87037 1.86710 1.73524 1.35952 1.37460 1.24502 0.94616 1.04845 1.04395 1.86137 1.14933 1.62630 1.14165 1.23677 0.92938 0.98070 0.98381 1.21693 0.96364 0.99758 0.99131 1.21429 0.99284 0.95518 0.91310 1.21925 0.97190 1.03582 0.91233 1.98380 1.94331 1.75581 1.34717 1.22745 0.93649 0.91614 0.94839 1.68323 1.33578 1.16490 1.00813 0.93812 0.90684 0.97072 0.95148 0.99252 0.92955 0.91836 0.94625 0.78919 0.88853 0.88140 0.83274 0.83369 0.81695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.31 60.07 0.56 1.34 16 2 N -0.53 -11.26 4.56 -244.36 -1.11 -12.37 16 3 C 0.19 4.97 4.55 -4.97 -0.02 4.95 16 4 C -0.50 -14.27 8.54 -34.44 -0.29 -14.56 16 5 H 0.06 1.79 7.10 -52.49 -0.37 1.41 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.03 0.54 4.66 -3.82 -0.02 0.52 16 13 C 0.13 2.02 3.08 -26.73 -0.08 1.94 16 14 H 0.11 2.10 6.78 -51.93 -0.35 1.75 16 15 O -0.53 -8.63 12.81 -35.23 -0.45 -9.08 16 16 C -0.13 -1.71 4.90 37.16 0.18 -1.53 16 17 S -0.02 -0.29 21.55 -107.50 -2.32 -2.61 16 18 C 0.12 1.36 7.00 -16.93 -0.12 1.24 16 19 C -0.14 -1.32 9.84 -39.21 -0.39 -1.70 16 20 C -0.05 -0.38 9.97 -39.29 -0.39 -0.77 16 21 C -0.11 -0.92 6.34 -39.34 -0.25 -1.17 16 22 Cl -0.06 -0.45 28.98 -51.86 -1.50 -1.95 16 23 C 0.13 1.27 10.97 -17.53 -0.19 1.08 16 24 N -0.48 -5.60 9.43 -12.08 -0.11 -5.71 16 25 H 0.04 0.69 7.94 -51.93 -0.41 0.28 16 26 H 0.07 1.54 6.90 -51.93 -0.36 1.18 16 27 H 0.01 0.21 8.13 -51.93 -0.42 -0.22 16 28 H 0.03 0.84 6.63 -51.93 -0.34 0.50 16 29 H -0.01 -0.28 8.11 -51.93 -0.42 -0.71 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.06 0.90 7.80 -51.93 -0.41 0.49 16 32 H 0.04 0.61 8.00 -51.93 -0.42 0.19 16 33 H 0.37 4.45 9.05 45.56 0.41 4.87 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -31.84 351.29 -9.94 -41.78 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.34 Total: 1.13 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.11 Total: -7.22 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.49 Total: -44.20 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.45 Total: -9.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -2.32 Total: -2.61 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.84 -9.94 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414107779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.195 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds