Wall clock time and date at job start Fri Apr 10 2020 23:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46904 * 110.99795 * 2 1 4 4 C 1.50702 * 109.47028 * 66.04375 * 3 2 1 5 5 H 1.07989 * 120.00232 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99438 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00276 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99488 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47436 * 90.00039 * 8 6 4 10 10 H 1.48501 * 109.46860 * 209.99895 * 8 6 4 11 11 H 1.48503 * 109.47278 * 329.99830 * 8 6 4 12 12 C 1.46902 * 111.00071 * 236.04847 * 2 1 3 13 13 C 1.53000 * 109.46751 * 199.83123 * 12 2 1 14 14 H 1.09002 * 109.46963 * 300.49792 * 13 12 2 15 15 O 1.42893 * 109.47380 * 60.50381 * 13 12 2 16 16 C 1.53007 * 109.46647 * 180.50106 * 13 12 2 17 17 S 1.81401 * 109.46563 * 179.97438 * 16 13 12 18 18 C 1.76202 * 102.99484 * 180.02562 * 17 16 13 19 19 C 1.39190 * 119.69486 * 179.97438 * 18 17 16 20 20 C 1.38273 * 119.10609 * 179.97438 * 19 18 17 21 21 C 1.38996 * 118.50185 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 120.34264 * 179.97438 * 21 20 19 23 23 C 1.38133 * 119.31512 * 0.02562 * 21 20 19 24 24 N 1.31971 * 120.84513 * 359.73586 * 23 21 20 25 25 H 1.08996 * 109.46746 * 178.41273 * 1 2 3 26 26 H 1.08999 * 109.46872 * 298.41620 * 1 2 3 27 27 H 1.08997 * 109.46723 * 58.41819 * 1 2 3 28 28 H 1.08997 * 109.47134 * 186.04933 * 3 2 1 29 29 H 1.09002 * 109.47069 * 306.04511 * 3 2 1 30 30 H 0.97005 * 119.99921 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.46608 * 319.82896 * 12 2 1 32 32 H 1.09001 * 109.47150 * 79.82838 * 12 2 1 33 33 H 0.96699 * 114.00248 * 59.99565 * 15 13 12 34 34 H 1.08992 * 109.47189 * 299.99651 * 16 13 12 35 35 H 1.08992 * 109.47114 * 60.00178 * 16 13 12 36 36 H 1.07996 * 120.44724 * 359.95165 * 19 18 17 37 37 H 1.08002 * 120.74874 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.57489 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 2.7119 4.0020 0.6149 8 14 1.5829 4.1869 3.1381 9 1 2.6603 3.9509 4.1325 10 1 1.4299 5.6465 2.9111 11 1 0.3055 3.6291 3.6505 12 6 1.9955 -0.7659 -1.1376 13 6 3.4451 -1.1661 -0.8558 14 1 4.0462 -0.2699 -0.7024 15 8 3.4951 -1.9799 0.3178 16 6 3.9974 -1.9532 -2.0460 17 16 5.7164 -2.4270 -1.7121 18 6 6.1744 -3.3080 -3.1677 19 6 7.4571 -3.8369 -3.2787 20 6 7.8033 -4.5266 -4.4261 21 6 6.8512 -4.6658 -5.4291 22 17 7.2348 -5.5218 -6.8898 23 6 5.5968 -4.1150 -5.2520 24 7 5.2932 -3.4658 -4.1438 25 1 -0.3633 -1.0272 -0.0285 26 1 -0.3633 0.4890 0.9038 27 1 -0.3633 0.5382 -0.8755 28 1 3.0797 1.3445 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 2.9858 4.9184 0.7765 31 1 1.3926 -1.6624 -1.2821 32 1 1.9563 -0.1526 -2.0379 33 1 2.9812 -2.7964 0.2524 34 1 3.3964 -2.8494 -2.1994 35 1 3.9594 -1.3325 -2.9411 36 1 8.1723 -3.7101 -2.4796 37 1 8.7911 -4.9483 -4.5400 38 1 4.8536 -4.2210 -6.0285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414107779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:41 Heat of formation + Delta-G solvation = -42.113488 kcal Electronic energy + Delta-G solvation = -20811.632827 eV Core-core repulsion = 17419.259423 eV Total energy + Delta-G solvation = -3392.373404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.10744 -39.40773 -37.65578 -37.10206 -34.60732 -33.67434 -32.33988 -32.13108 -29.45242 -28.17725 -25.67616 -24.94089 -24.76297 -23.23749 -21.79083 -19.26947 -18.61747 -17.84068 -17.75213 -17.28850 -16.96984 -16.56926 -16.11807 -16.03262 -15.60665 -15.55949 -15.15088 -14.83620 -14.41642 -14.07527 -13.97071 -13.68119 -13.34903 -13.17011 -13.05246 -12.91450 -12.62482 -12.52034 -12.43682 -12.28737 -12.21778 -11.74980 -11.37382 -11.32538 -11.01156 -10.94308 -10.76787 -10.66738 -10.60102 -8.97296 -8.61533 -8.20017 -6.29236 -0.32350 0.05324 0.30353 0.97497 1.21835 1.40697 1.42981 1.53406 2.40863 2.42735 3.11696 3.16861 3.38433 3.54318 3.69224 3.83166 3.83802 3.88020 3.94449 4.20089 4.29654 4.54270 4.55482 4.57618 4.68415 4.69731 4.77683 4.82929 4.99355 5.08979 5.19466 5.27009 5.30566 5.65570 6.06276 6.32907 6.50260 6.62264 6.86485 6.96973 7.40060 8.91194 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.002272 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.478880 B =12319.904854 C =12592.179035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.522 4.522 5 H 0.062 0.938 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.263 1.263 12 C 0.033 3.967 13 C 0.139 3.861 14 H 0.071 0.929 15 O -0.550 6.550 16 C -0.116 4.116 17 S -0.053 6.053 18 C 0.101 3.899 19 C -0.142 4.142 20 C -0.042 4.042 21 C -0.104 4.104 22 Cl -0.046 7.046 23 C 0.122 3.878 24 N -0.499 5.499 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.009 0.991 28 H 0.004 0.996 29 H -0.039 1.039 30 H 0.264 0.736 31 H 0.101 0.899 32 H 0.031 0.969 33 H 0.383 0.617 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.166 0.834 37 H 0.178 0.822 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 -21.201 -13.330 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.187 1.187 12 C -0.098 4.098 13 C 0.077 3.923 14 H 0.089 0.911 15 O -0.356 6.356 16 C -0.265 4.265 17 S 0.190 5.810 18 C -0.147 4.147 19 C -0.169 4.169 20 C -0.070 4.070 21 C -0.136 4.136 22 Cl -0.018 7.018 23 C -0.039 4.039 24 N -0.213 5.213 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.022 0.978 29 H -0.022 1.022 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.049 0.951 33 H 0.232 0.768 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.183 0.817 37 H 0.195 0.805 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.631 -20.196 -11.671 24.871 hybrid contribution -0.603 0.275 -1.811 1.929 sum 8.028 -19.921 -13.483 25.359 Atomic orbital electron populations 1.22226 0.87187 1.01252 0.99966 1.61913 1.08064 1.15127 1.41423 1.19413 0.93751 0.83865 0.94813 1.21474 1.34706 0.97384 1.02430 0.92002 1.25921 0.95109 0.98143 1.00681 1.70082 1.39477 1.11875 1.36144 0.85394 0.78968 0.77258 0.79072 1.20026 1.20707 1.18746 1.22738 0.95941 0.99006 0.92090 1.21380 0.95103 0.92417 0.83411 0.91086 1.86665 1.74204 1.37002 1.37770 1.24201 0.95031 1.04870 1.02398 1.86142 1.15028 1.63779 1.16005 1.23582 0.93980 0.99139 0.97984 1.21924 0.95714 0.99171 1.00054 1.21770 1.00348 0.94526 0.90318 1.22035 0.97006 1.02866 0.91705 1.98390 1.94198 1.75191 1.33981 1.23053 0.94668 0.91501 0.94664 1.68238 1.34246 1.17283 1.01496 0.89727 0.92633 0.97269 0.97798 1.02187 0.92739 0.88046 0.95082 0.76797 0.87085 0.88562 0.81692 0.80456 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.31 127.69 1.19 2.75 16 2 N -0.54 -23.09 4.56 -927.02 -4.23 -27.31 16 3 C 0.21 11.23 4.55 85.56 0.39 11.62 16 4 C -0.52 -30.21 8.54 25.60 0.22 -30.00 16 5 H 0.06 3.52 7.10 -2.92 -0.02 3.50 16 6 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 7 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 8 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 C 0.03 1.08 4.66 86.30 0.40 1.48 16 13 C 0.14 4.45 3.08 30.60 0.09 4.54 16 14 H 0.07 2.87 6.78 -2.39 -0.02 2.85 16 15 O -0.55 -17.69 12.81 -148.98 -1.91 -19.59 16 16 C -0.12 -2.93 4.90 71.98 0.35 -2.58 16 17 S -0.05 -1.35 21.55 -56.49 -1.22 -2.57 16 18 C 0.10 2.26 7.00 84.83 0.59 2.85 16 19 C -0.14 -2.40 9.84 22.51 0.22 -2.18 16 20 C -0.04 -0.56 9.97 22.46 0.22 -0.34 16 21 C -0.10 -1.57 6.34 22.43 0.14 -1.42 16 22 Cl -0.05 -0.60 28.98 -2.72 -0.08 -0.68 16 23 C 0.12 2.15 10.97 84.65 0.93 3.08 16 24 N -0.50 -11.18 9.43 -192.14 -1.81 -12.99 16 25 H 0.08 2.45 7.94 -2.39 -0.02 2.43 16 26 H 0.05 2.27 6.90 -2.39 -0.02 2.25 16 27 H 0.01 0.33 8.13 -2.39 -0.02 0.31 16 28 H 0.00 0.23 6.63 -2.39 -0.02 0.22 16 29 H -0.04 -2.31 8.11 -2.39 -0.02 -2.33 16 30 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 31 H 0.10 2.59 7.80 -2.39 -0.02 2.57 16 32 H 0.03 1.07 8.00 -2.39 -0.02 1.05 16 33 H 0.38 8.79 9.05 -74.06 -0.67 8.12 16 34 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -70.26 351.29 -1.31 -71.56 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.41 Total: 11.11 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 5.22 Total: -9.78 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -5.75 Total: -97.29 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -1.91 Total: -19.59 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -1.22 Total: -2.57 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -70.26 -1.31 -71.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414107779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.451 kcal (2) G-P(sol) polarization free energy of solvation -70.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds