Wall clock time and date at job start Fri Apr 10 2020 23:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00341 * 2 1 4 4 H 1.48501 * 109.47143 * 270.00110 * 3 2 1 5 5 H 1.48501 * 109.46840 * 30.00134 * 3 2 1 6 6 H 1.48501 * 109.47278 * 150.00158 * 3 2 1 7 7 C 1.38815 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00385 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99768 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64698 * 0.02562 * 9 7 2 11 11 C 1.54320 * 107.26880 * 178.92214 * 10 9 7 12 12 C 1.55160 * 102.94325 * 337.80552 * 11 10 9 13 13 H 1.08995 * 111.00304 * 277.38778 * 12 11 10 14 14 N 1.46504 * 111.00321 * 153.57875 * 12 11 10 15 15 C 1.34769 * 120.00014 * 155.00311 * 14 12 11 16 16 O 1.21641 * 120.00105 * 359.97438 * 15 14 12 17 17 C 1.47184 * 120.00111 * 179.97438 * 15 14 12 18 18 C 1.44427 * 123.46216 * 0.02562 * 17 15 14 19 19 C 1.32772 * 113.08659 * 179.97438 * 18 17 15 20 20 S 1.75506 * 110.57234 * 0.02562 * 19 18 17 21 21 C 1.36011 * 123.46085 * 179.97438 * 17 15 14 22 22 C 1.50695 * 124.59282 * 0.02562 * 21 17 15 23 23 F 1.39907 * 109.47146 * 299.97210 * 22 21 17 24 24 F 1.39898 * 109.47624 * 59.97078 * 22 21 17 25 25 C 1.47422 * 125.64559 * 180.02562 * 9 7 2 26 26 H 0.97004 * 119.99620 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.88097 * 59.50431 * 10 9 7 28 28 H 1.08999 * 109.88472 * 298.33625 * 10 9 7 29 29 H 1.09004 * 110.72151 * 219.43978 * 11 10 9 30 30 H 1.09004 * 110.87774 * 96.24312 * 11 10 9 31 31 H 0.96996 * 119.99865 * 334.99746 * 14 12 11 32 32 H 1.07997 * 123.45480 * 359.97438 * 18 17 15 33 33 H 1.07994 * 124.71193 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.47459 * 179.97438 * 22 21 17 35 35 H 1.09001 * 110.36674 * 85.31059 * 25 9 7 36 36 H 1.08997 * 110.36917 * 322.98151 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1376 -2.5327 -0.0028 11 6 -0.4486 -4.0440 -0.0314 12 6 0.8522 -4.6554 -0.6159 13 1 0.8576 -4.5951 -1.7042 14 7 1.0290 -6.0393 -0.1687 15 6 1.7597 -6.8979 -0.9070 16 8 2.2721 -6.5240 -1.9450 17 6 1.9378 -8.2881 -0.4575 18 6 1.3635 -8.8111 0.7601 19 6 1.6541 -10.0902 0.9653 20 16 2.6533 -10.7122 -0.3366 21 6 2.6592 -9.2125 -1.1466 22 6 3.3685 -8.9466 -2.4494 23 9 2.4376 -8.5456 -3.4138 24 9 4.3160 -7.9337 -2.2664 25 6 1.9333 -3.7312 -0.0017 26 1 -0.4850 0.8401 0.0004 27 1 -0.5570 -2.0511 -0.8861 28 1 -0.5551 -2.0854 0.8993 29 1 -1.2982 -4.2507 -0.6823 30 1 -0.6343 -4.4215 0.9742 31 1 0.6202 -6.3376 0.6588 32 1 0.7596 -8.2221 1.4345 33 1 1.3219 -10.6677 1.8153 34 1 3.8685 -9.8558 -2.7831 35 1 2.1651 -4.0428 1.0168 36 1 2.8335 -3.7401 -0.6162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016125037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:15:55 Heat of formation + Delta-G solvation = -94.347871 kcal Electronic energy + Delta-G solvation = -24122.921880 eV Core-core repulsion = 20176.486744 eV Total energy + Delta-G solvation = -3946.435137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -49.85762 -47.90365 -41.13585 -39.14383 -37.84481 -35.68066 -33.77845 -32.06435 -31.09253 -29.28443 -27.67187 -26.37851 -24.54065 -22.84226 -22.06082 -21.81517 -20.62136 -19.50426 -19.03922 -18.22328 -18.15861 -17.55056 -17.12436 -16.75334 -16.37397 -16.09960 -15.82113 -15.63649 -14.88170 -14.74767 -14.49634 -14.25591 -14.20963 -14.04852 -13.82428 -13.75532 -13.64341 -13.29337 -12.97573 -12.78218 -12.44824 -12.28264 -12.14383 -12.07119 -12.04718 -11.83939 -11.61242 -11.04671 -10.74181 -10.23561 -10.11906 -9.43994 -8.94564 -7.88517 -5.24963 -0.54637 0.31626 0.78106 0.93837 1.44118 1.46927 1.55400 2.08465 2.23883 2.48902 2.77678 3.15440 3.29983 3.59830 3.65216 3.69824 3.84428 3.97624 4.02093 4.15203 4.21000 4.34567 4.55436 4.68488 4.77061 4.83624 4.94383 4.97409 5.05431 5.14166 5.39636 5.48602 5.61775 5.71048 6.16155 6.51589 7.07002 7.19299 7.71842 8.35440 9.21556 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.003142 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.716235 B = 8909.007053 C = 9438.010242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.626 5.626 10 C 0.185 3.815 11 C -0.126 4.126 12 C 0.147 3.853 13 H 0.072 0.928 14 N -0.693 5.693 15 C 0.557 3.443 16 O -0.563 6.563 17 C -0.134 4.134 18 C -0.125 4.125 19 C -0.202 4.202 20 S 0.300 5.700 21 C -0.289 4.289 22 C 0.339 3.661 23 F -0.206 7.206 24 F -0.207 7.207 25 C 0.130 3.870 26 H 0.249 0.751 27 H 0.013 0.987 28 H 0.020 0.980 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.416 0.584 32 H 0.176 0.824 33 H 0.215 0.785 34 H 0.162 0.838 35 H 0.033 0.967 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -29.135 3.614 29.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.379 4.379 8 H 0.094 0.906 9 N -0.353 5.353 10 C 0.060 3.940 11 C -0.165 4.165 12 C 0.041 3.959 13 H 0.090 0.910 14 N -0.345 5.345 15 C 0.343 3.657 16 O -0.443 6.443 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.338 4.338 20 S 0.568 5.432 21 C -0.410 4.410 22 C 0.284 3.716 23 F -0.187 7.187 24 F -0.188 7.188 25 C 0.003 3.997 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.038 0.962 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.254 0.746 32 H 0.194 0.806 33 H 0.232 0.768 34 H 0.178 0.822 35 H 0.051 0.949 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.723 -30.055 2.587 30.289 hybrid contribution -0.429 3.061 0.282 3.104 sum 2.294 -26.994 2.870 27.243 Atomic orbital electron populations 1.70155 1.06132 1.25500 1.57809 1.25650 0.96744 1.00914 1.02128 0.85053 0.77679 0.78928 0.77495 1.21391 1.21374 1.19510 1.19425 0.90884 0.83798 1.43816 0.90627 1.44679 1.02748 1.00647 1.87208 1.20941 0.83331 0.91302 0.98450 1.23000 0.96015 0.95267 1.02219 1.21803 0.95796 0.79832 0.98495 0.90993 1.45534 1.52636 1.09718 1.26580 1.18213 0.78345 0.85574 0.83543 1.90869 1.49021 1.79042 1.25332 1.20362 1.03303 0.93435 0.98310 1.21406 1.02215 0.96187 0.95422 1.26115 1.04010 0.98872 1.04758 1.82613 1.45634 1.03397 1.11550 1.25456 1.08059 1.03689 1.03790 1.20138 0.79476 0.89072 0.82910 1.93007 1.68025 1.92758 1.64915 1.93014 1.65057 1.65140 1.95637 1.21904 0.95027 0.85394 0.97344 0.94133 0.96884 0.96155 0.89320 0.88665 0.74601 0.80646 0.76827 0.82162 0.94924 0.96136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.92 10.31 21.65 0.22 -57.69 16 2 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 3 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.25 -14.89 10.28 84.03 0.86 -14.03 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -34.16 3.39 -691.97 -2.35 -36.51 16 10 C 0.18 9.26 5.37 86.73 0.47 9.73 16 11 C -0.13 -4.49 6.60 31.78 0.21 -4.28 16 12 C 0.15 5.58 3.42 46.39 0.16 5.74 16 13 H 0.07 3.15 7.54 -2.39 -0.02 3.13 16 14 N -0.69 -20.27 5.18 -439.40 -2.27 -22.54 16 15 C 0.56 18.22 7.75 86.59 0.67 18.89 16 16 O -0.56 -23.79 12.40 -4.16 -0.05 -23.84 16 17 C -0.13 -3.16 5.98 -19.87 -0.12 -3.28 16 18 C -0.12 -1.74 9.91 22.67 0.22 -1.52 16 19 C -0.20 -1.69 11.12 66.64 0.74 -0.95 16 20 S 0.30 2.94 22.95 -56.49 -1.30 1.64 16 21 C -0.29 -6.05 5.78 25.17 0.15 -5.90 16 22 C 0.34 8.17 5.03 71.23 0.36 8.53 16 23 F -0.21 -6.46 15.71 44.97 0.71 -5.75 16 24 F -0.21 -6.71 15.71 44.97 0.71 -6.01 16 25 C 0.13 5.93 6.93 86.86 0.60 6.54 16 26 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 27 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 28 H 0.02 1.11 7.51 -2.39 -0.02 1.09 16 29 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.09 2.76 8.00 -2.38 -0.02 2.74 16 31 H 0.42 8.67 7.11 -92.71 -0.66 8.01 16 32 H 0.18 1.58 7.10 -2.91 -0.02 1.56 16 33 H 0.21 0.14 8.06 -2.91 -0.02 0.11 16 34 H 0.16 2.07 8.11 -2.39 -0.02 2.06 16 35 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -82.77 321.56 2.95 -79.81 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 0.47 Total: 5.21 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 4.79 Total: 16.33 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -4.40 Total: -116.74 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 9 Polarization: -13.17 SS G_CDS: 1.41 Total: -11.76 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.30 Total: 1.64 kcal Total: -82.77 2.95 -79.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016125037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.533 kcal (2) G-P(sol) polarization free energy of solvation -82.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds