Wall clock time and date at job start Fri Apr 10 2020 23:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86793 * 120.00103 * 2 1 4 4 H 1.48502 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47377 * 299.99712 * 3 2 1 6 6 H 1.48506 * 109.47201 * 59.99598 * 3 2 1 7 7 C 1.40038 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07989 * 119.99708 * 170.15955 * 7 2 1 9 9 C 1.41544 * 119.99830 * 350.16752 * 7 2 1 10 10 C 1.41173 * 120.99163 * 153.73117 * 9 7 2 11 11 C 1.37595 * 119.00940 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11023 * 0.02562 * 11 10 9 13 13 C 1.32467 * 122.23373 * 359.65377 * 12 11 10 14 14 N 1.39467 * 119.58174 * 180.34224 * 13 12 11 15 15 C 1.34775 * 120.00029 * 5.65811 * 14 13 12 16 16 O 1.21279 * 120.00025 * 5.07897 * 15 14 13 17 17 C 1.50706 * 119.99986 * 185.07695 * 15 14 13 18 18 C 1.53002 * 109.46859 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46984 * 180.02562 * 18 17 15 20 20 C 1.50698 * 109.47531 * 179.97438 * 19 18 17 21 21 C 1.38417 * 122.54318 * 269.74467 * 20 19 18 22 22 C 1.33390 * 114.92404 * 179.75746 * 21 20 19 23 23 S 1.75889 * 109.58999 * 0.47334 * 22 21 20 24 24 C 1.33393 * 122.53677 * 90.01826 * 20 19 18 25 25 C 1.38600 * 120.83629 * 0.63836 * 13 12 11 26 26 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.49570 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.44118 * 179.97438 * 11 10 9 29 29 H 0.97002 * 119.99903 * 185.65656 * 14 13 12 30 30 H 1.08993 * 109.47260 * 299.99901 * 17 15 14 31 31 H 1.08998 * 109.47113 * 59.99988 * 17 15 14 32 32 H 1.09000 * 109.46852 * 299.99605 * 18 17 15 33 33 H 1.08998 * 109.47306 * 60.00060 * 18 17 15 34 34 H 1.09004 * 109.47134 * 300.00362 * 19 18 17 35 35 H 1.09008 * 109.47045 * 60.00003 * 19 18 17 36 36 H 1.08004 * 122.53628 * 359.97438 * 21 20 19 37 37 H 1.07999 * 125.20324 * 180.20376 * 22 21 20 38 38 H 1.07999 * 125.20351 * 0.03537 * 24 20 19 39 39 H 1.08003 * 120.59744 * 179.67474 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2197 -0.1593 9 6 1.3154 -2.4294 0.2104 10 6 1.8136 -3.6469 -0.3019 11 6 1.1073 -4.8056 -0.0741 12 7 -0.0215 -4.7930 0.6116 13 6 -0.5280 -3.6789 1.1184 14 7 -1.7205 -3.7306 1.8398 15 6 -2.2904 -4.9204 2.1153 16 8 -1.7211 -5.9490 1.8173 17 6 -3.6351 -4.9727 2.7937 18 6 -4.0511 -6.4321 2.9894 19 6 -5.4166 -6.4852 3.6775 20 6 -5.8267 -7.9225 3.8698 21 6 -6.5591 -8.6206 2.9253 22 6 -6.8343 -9.8849 3.2493 23 16 -6.1595 -10.2483 4.8324 24 6 -5.5158 -8.6169 4.9656 25 6 0.1091 -2.4616 0.9359 26 1 -0.4850 0.8401 -0.0004 27 1 2.7349 -3.6685 -0.8650 28 1 1.4818 -5.7408 -0.4632 29 1 -2.1397 -2.9101 2.1432 30 1 -3.5720 -4.4801 3.7639 31 1 -4.3742 -4.4637 2.1750 32 1 -4.1141 -6.9251 2.0193 33 1 -3.3119 -6.9407 3.6082 34 1 -5.3540 -5.9919 4.6476 35 1 -6.1556 -5.9767 3.0583 36 1 -6.8804 -8.1762 1.9948 37 1 -7.3904 -10.5781 2.6355 38 1 -4.9551 -8.2355 5.8061 39 1 -0.3100 -1.5548 1.3464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783444223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:15:25 Heat of formation + Delta-G solvation = 19.024290 kcal Electronic energy + Delta-G solvation = -22125.250695 eV Core-core repulsion = 18737.961274 eV Total energy + Delta-G solvation = -3387.289421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.62599 -38.62940 -37.76853 -34.46024 -33.96715 -33.69015 -30.58961 -30.23999 -28.77114 -27.24838 -25.99848 -23.86485 -22.24971 -21.90874 -20.94408 -19.55782 -18.87860 -17.80482 -17.64918 -16.76164 -15.81386 -15.66991 -15.29919 -15.16757 -14.20210 -14.11771 -13.93478 -13.67967 -13.53176 -13.17491 -12.94668 -12.80465 -12.61611 -12.52667 -12.29510 -11.75134 -11.65092 -11.43718 -11.41319 -11.19746 -10.92111 -10.86195 -10.66007 -10.28250 -10.12394 -9.72970 -9.41226 -9.31093 -8.97304 -8.53397 -7.99186 -7.72694 -7.03560 -6.75244 -4.63814 0.83795 1.49496 1.81338 2.53147 2.56175 2.77344 3.00920 3.06377 3.19181 3.49295 3.69986 3.84600 4.66147 4.68687 4.77603 4.96139 4.99723 5.10980 5.32237 5.34136 5.46222 5.58530 5.64875 5.67596 5.68185 5.85635 6.04157 6.06966 6.25424 6.37324 6.38541 6.58975 6.66195 6.80078 6.95278 7.12545 7.38806 7.47405 7.79031 7.95817 8.22738 8.43432 8.70230 8.74909 8.92508 9.68801 10.08585 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.032276 B = 0.002090 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.304083 B =13390.941698 C =13944.571921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.141 3.859 10 C -0.282 4.282 11 C 0.117 3.883 12 N -0.554 5.554 13 C 0.335 3.665 14 N -0.661 5.661 15 C 0.496 3.504 16 O -0.484 6.484 17 C -0.140 4.140 18 C -0.096 4.096 19 C -0.062 4.062 20 C -0.095 4.095 21 C -0.128 4.128 22 C -0.213 4.213 23 S 0.080 5.920 24 C -0.211 4.211 25 C -0.240 4.240 26 H 0.280 0.720 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.408 0.592 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.972 -8.736 8.599 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.132 3.868 10 C -0.306 4.306 11 C -0.038 4.038 12 N -0.273 5.273 13 C 0.110 3.890 14 N -0.307 5.307 15 C 0.281 3.719 16 O -0.355 6.355 17 C -0.181 4.181 18 C -0.134 4.134 19 C -0.102 4.102 20 C -0.108 4.108 21 C -0.159 4.159 22 C -0.348 4.348 23 S 0.344 5.656 24 C -0.346 4.346 25 C -0.265 4.265 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.141 0.859 29 H 0.242 0.758 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.158 0.842 37 H 0.180 0.820 38 H 0.181 0.819 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.267 -11.485 9.469 20.618 hybrid contribution 0.551 3.304 -1.024 3.503 sum -13.717 -8.180 8.445 18.066 Atomic orbital electron populations 1.69752 1.07566 1.29051 1.35840 1.25955 0.94890 1.01465 0.92027 0.86153 0.80843 0.80521 0.78579 1.18359 1.19886 1.19700 1.19615 0.95861 0.89989 1.43070 0.90029 1.17606 0.90410 0.92299 0.86473 1.21928 1.04147 0.94414 1.10115 1.21761 0.90621 0.96531 0.94853 1.67187 1.14955 1.28141 1.16980 1.18240 0.86683 0.90869 0.93200 1.43516 1.23465 1.09160 1.54572 1.20717 0.87261 0.83936 0.80031 1.90771 1.63013 1.32643 1.49027 1.21707 0.95232 0.99333 1.01800 1.21286 0.95278 0.94889 1.01973 1.20390 0.97386 0.90871 1.01504 1.18972 0.99912 0.98008 0.93859 1.20153 1.00829 0.93926 1.00947 1.25581 1.08439 1.00503 1.00261 1.84240 1.52350 1.13094 1.15962 1.25471 1.08703 0.96805 1.03616 1.21682 1.00962 0.95584 1.08264 0.90889 0.87973 0.85909 0.75765 0.89255 0.89099 0.90937 0.91062 0.90911 0.90755 0.84162 0.81978 0.81917 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.46 10.70 55.55 0.59 -18.87 16 2 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 3 Si 0.91 17.90 29.57 -169.99 -5.03 12.87 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.45 -11.67 9.14 -37.65 -0.34 -12.01 16 8 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 9 C 0.14 3.71 5.60 -106.55 -0.60 3.11 16 10 C -0.28 -6.98 9.90 -38.70 -0.38 -7.36 16 11 C 0.12 2.84 11.15 -17.68 -0.20 2.64 16 12 N -0.55 -14.28 7.89 -12.52 -0.10 -14.38 16 13 C 0.33 8.15 7.40 -154.71 -1.15 7.00 16 14 N -0.66 -12.80 5.39 -11.49 -0.06 -12.86 16 15 C 0.50 9.08 7.78 -10.98 -0.09 9.00 16 16 O -0.48 -11.04 14.28 5.56 0.08 -10.96 16 17 C -0.14 -1.68 5.70 -27.88 -0.16 -1.84 16 18 C -0.10 -1.14 4.49 -26.73 -0.12 -1.26 16 19 C -0.06 -0.56 5.47 -27.88 -0.15 -0.71 16 20 C -0.10 -0.96 5.06 -106.25 -0.54 -1.49 16 21 C -0.13 -1.23 9.98 -41.21 -0.41 -1.64 16 22 C -0.21 -1.90 11.23 29.04 0.33 -1.57 16 23 S 0.08 0.72 23.34 -107.50 -2.51 -1.79 16 24 C -0.21 -2.04 10.98 29.04 0.32 -1.72 16 25 C -0.24 -6.08 8.61 -38.48 -0.33 -6.41 16 26 H 0.28 6.17 8.29 -40.82 -0.34 5.84 16 27 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 29 H 0.41 6.40 8.70 -40.82 -0.36 6.04 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.99 8.10 -51.93 -0.42 0.56 16 33 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 35 H 0.07 0.59 8.13 -51.92 -0.42 0.17 16 36 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 37 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.13 3.33 6.11 -52.48 -0.32 3.01 16 LS Contribution 350.26 15.07 5.28 5.28 Total: -1.00 -31.89 350.26 -10.52 -42.42 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -4.87 Total: 10.85 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -3.91 Total: -12.57 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.43 Total: -46.10 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.89 -10.52 -42.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783444223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.441 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds