Wall clock time and date at job start Fri Apr 10 2020 23:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.29025 * 124.91202 * 2 1 4 4 C 1.31784 * 117.12246 * 179.97438 * 3 2 1 5 5 C 1.33645 * 114.49854 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.03679 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46945 * 90.00136 * 6 5 4 8 8 N 1.46505 * 109.46569 * 179.97438 * 7 6 5 9 9 C 1.34784 * 119.99604 * 179.97438 * 8 7 6 10 10 O 1.21609 * 119.99856 * 0.02562 * 9 8 7 11 11 C 1.47431 * 119.99756 * 180.02562 * 9 8 7 12 12 C 1.39220 * 120.28267 * 354.96104 * 11 9 8 13 13 C 1.38230 * 120.09210 * 179.97438 * 12 11 9 14 14 C 1.38822 * 120.67230 * 0.02562 * 13 12 11 15 15 C 1.37600 * 120.57323 * 359.97438 * 14 13 12 16 16 C 1.40705 * 119.88102 * 359.74919 * 15 14 13 17 17 C 1.40891 * 120.32852 * 180.25139 * 16 15 14 18 18 H 1.07996 * 120.00382 * 141.52740 * 17 16 15 19 19 C 1.40274 * 119.99715 * 321.52134 * 17 16 15 20 20 N 1.30630 * 119.99899 * 174.40605 * 19 17 16 21 21 Si 1.86795 * 120.00215 * 354.40833 * 19 17 16 22 22 H 1.48496 * 109.47401 * 89.36837 * 21 19 17 23 23 H 1.48504 * 109.47139 * 209.36680 * 21 19 17 24 24 H 1.48496 * 109.47249 * 329.36361 * 21 19 17 25 25 S 1.70976 * 124.91488 * 180.31132 * 2 1 3 26 26 H 1.08999 * 109.46947 * 89.97575 * 1 2 3 27 27 H 1.08994 * 109.46979 * 209.97695 * 1 2 3 28 28 H 1.09006 * 109.46969 * 329.97661 * 1 2 3 29 29 H 1.07993 * 122.75155 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47036 * 329.99774 * 6 5 4 31 31 H 1.09006 * 109.46983 * 210.00000 * 6 5 4 32 32 H 1.08995 * 109.47193 * 60.00360 * 7 6 5 33 33 H 1.08997 * 109.47002 * 299.99690 * 7 6 5 34 34 H 0.96994 * 120.00520 * 359.97438 * 8 7 6 35 35 H 1.07997 * 119.95639 * 359.95648 * 12 11 9 36 36 H 1.07996 * 119.65826 * 180.02562 * 13 12 11 37 37 H 1.08004 * 119.71693 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.06029 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00117 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 3.9355 -0.4006 0.0004 6 6 5.3575 -0.8994 0.0015 7 6 5.8375 -1.0686 1.4444 8 7 7.2198 -1.5541 1.4453 9 6 7.8548 -1.7772 2.6130 10 8 7.2803 -1.5759 3.6658 11 6 9.2460 -2.2652 2.6140 12 6 9.8744 -2.5972 1.4169 13 6 11.1791 -3.0539 1.4223 14 6 11.8775 -3.1878 2.6145 15 6 11.2833 -2.8676 3.8136 16 6 9.9582 -2.3950 3.8351 17 6 9.3423 -2.0593 5.0570 18 1 8.6885 -1.2016 5.1145 19 6 9.5783 -2.8391 6.1988 20 7 9.0966 -2.4673 7.3547 21 14 10.5813 -4.4094 6.0665 22 1 12.0187 -4.0973 6.2703 23 1 10.1321 -5.3726 7.1037 24 1 10.3904 -5.0067 4.7205 25 16 2.4857 -1.4020 -0.0076 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8901 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 4.2532 1.7001 0.0010 30 1 5.9953 -0.1797 -0.5116 31 1 5.4062 -1.8593 -0.5126 32 1 5.1997 -1.7884 1.9574 33 1 5.7888 -0.1087 1.9584 34 1 7.6779 -1.7150 0.6057 35 1 9.3417 -2.4981 0.4827 36 1 11.6598 -3.3090 0.4895 37 1 12.8962 -3.5464 2.6009 38 1 11.8342 -2.9753 4.7363 39 1 9.2601 -3.0063 8.1444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866824999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:15 Heat of formation + Delta-G solvation = 22.384305 kcal Electronic energy + Delta-G solvation = -22508.855966 eV Core-core repulsion = 19121.712246 eV Total energy + Delta-G solvation = -3387.143720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90562 -39.08231 -37.15276 -35.27374 -33.69516 -32.86790 -31.06205 -30.48131 -29.82185 -27.04178 -25.36443 -24.22935 -22.93454 -22.10811 -20.90755 -19.83047 -19.24486 -18.20351 -17.60066 -16.72549 -15.75899 -15.35139 -15.27919 -14.98294 -14.80364 -14.14450 -14.11032 -13.95814 -13.58077 -13.45893 -13.10266 -13.01686 -12.67334 -12.48099 -12.26480 -12.10948 -11.94767 -11.81315 -11.52474 -11.08278 -10.95275 -10.74108 -10.47680 -10.11144 -9.80797 -9.80109 -9.42530 -9.27913 -8.93256 -8.55503 -8.45365 -7.84776 -7.60880 -6.88333 -4.47697 0.49783 1.12927 1.55643 2.07533 2.57324 2.64480 3.08302 3.17344 3.27916 3.77214 3.95028 3.98510 3.99574 4.59207 4.77424 4.81278 4.87228 4.97204 5.11985 5.16444 5.34047 5.38256 5.51725 5.56073 5.73823 5.83992 5.97145 5.98129 6.02915 6.12474 6.36653 6.47403 6.76974 7.02290 7.09073 7.20631 7.35577 7.54946 7.55011 7.71901 7.98379 8.27381 8.47036 8.60771 8.82080 9.31101 10.09981 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.002832 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.393790 B = 9884.295137 C =10741.617917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.038 3.962 3 N -0.474 5.474 4 C 0.039 3.961 5 C -0.211 4.211 6 C -0.053 4.053 7 C 0.131 3.869 8 N -0.750 5.750 9 C 0.560 3.440 10 O -0.523 6.523 11 C -0.246 4.246 12 C -0.043 4.043 13 C -0.252 4.252 14 C -0.066 4.066 15 C -0.225 4.225 16 C 0.117 3.883 17 C -0.396 4.396 18 H 0.114 0.886 19 C 0.078 3.922 20 N -0.797 5.797 21 Si 0.909 3.091 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.243 1.243 25 S 0.124 5.876 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.176 0.824 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.392 0.608 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.415 0.629 -15.176 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.240 4.240 3 N -0.189 5.189 4 C -0.112 4.112 5 C -0.333 4.333 6 C -0.093 4.093 7 C 0.006 3.994 8 N -0.406 5.406 9 C 0.353 3.647 10 O -0.399 6.399 11 C -0.251 4.251 12 C -0.062 4.062 13 C -0.272 4.272 14 C -0.085 4.085 15 C -0.244 4.244 16 C 0.112 3.888 17 C -0.423 4.423 18 H 0.132 0.868 19 C -0.142 4.142 20 N -0.421 5.421 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.217 1.217 24 H -0.166 1.166 25 S 0.379 5.621 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.193 0.807 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.226 0.774 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.436 0.241 -14.086 18.146 hybrid contribution 1.322 -0.025 -0.342 1.366 sum -10.114 0.216 -14.428 17.622 Atomic orbital electron populations 1.20433 0.85274 1.04270 1.03742 1.27027 1.01806 0.91157 1.03976 1.66280 1.04941 1.31644 1.16004 1.21732 0.91081 0.95918 1.02458 1.25768 0.99561 0.96199 1.11758 1.20241 0.88706 1.02324 0.98064 1.21108 0.83762 1.00248 0.94284 1.45990 1.13739 1.71590 1.09254 1.18371 0.86600 0.77224 0.82535 1.90783 1.67759 1.50938 1.30427 1.19441 0.93220 1.18058 0.94369 1.20783 0.94460 0.95632 0.95326 1.20300 0.96121 1.14105 0.96630 1.20748 0.97830 0.96837 0.93051 1.21189 0.95776 1.10646 0.96769 1.17568 0.90366 0.88245 0.92604 1.19941 1.21446 1.11009 0.89906 0.86809 1.26310 0.93894 0.99801 0.94170 1.69546 1.35365 1.37192 0.99972 0.86385 0.79465 0.80921 0.79724 1.19431 1.21707 1.16599 1.84044 0.97666 1.12186 1.68231 0.89705 0.90091 0.89292 0.80671 0.88963 0.89921 0.91938 0.91632 0.77408 0.88654 0.88482 0.88516 0.87676 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.01 0.38 -0.14 16 2 C 0.04 0.39 7.39 -13.45 -0.10 0.29 16 3 N -0.47 -5.90 10.54 -11.86 -0.13 -6.02 16 4 C 0.04 0.45 11.25 -19.18 -0.22 0.23 16 5 C -0.21 -2.32 5.85 -35.92 -0.21 -2.53 16 6 C -0.05 -0.55 5.86 -27.88 -0.16 -0.71 16 7 C 0.13 1.90 5.66 -4.04 -0.02 1.87 16 8 N -0.75 -12.40 5.51 -61.38 -0.34 -12.73 16 9 C 0.56 12.57 7.72 -12.51 -0.10 12.48 16 10 O -0.52 -13.97 13.68 5.27 0.07 -13.90 16 11 C -0.25 -5.68 5.92 -104.37 -0.62 -6.30 16 12 C -0.04 -0.83 9.52 -39.22 -0.37 -1.21 16 13 C -0.25 -4.83 10.03 -39.37 -0.39 -5.23 16 14 C -0.07 -1.35 10.01 -39.60 -0.40 -1.75 16 15 C -0.22 -5.26 6.94 -38.88 -0.27 -5.53 16 16 C 0.12 2.99 5.04 -106.54 -0.54 2.46 16 17 C -0.40 -11.13 8.08 -37.81 -0.31 -11.44 16 18 H 0.11 3.54 6.37 -52.49 -0.33 3.21 16 19 C 0.08 2.10 5.51 -17.30 -0.10 2.00 16 20 N -0.80 -21.92 13.92 55.56 0.77 -21.15 16 21 Si 0.91 20.86 24.48 -169.99 -4.16 16.70 16 22 H -0.27 -5.83 6.71 56.52 0.38 -5.46 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.24 -5.69 6.67 56.52 0.38 -5.31 16 25 S 0.12 1.25 23.18 -107.50 -2.49 -1.24 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.39 5.26 6.53 -40.82 -0.27 4.99 16 35 H 0.10 1.46 6.43 -52.49 -0.34 1.12 16 36 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.11 2.43 4.87 -52.48 -0.26 2.17 16 39 H 0.29 7.08 8.29 -40.82 -0.34 6.75 16 LS Contribution 340.68 15.07 5.13 5.13 Total: -1.00 -32.32 340.68 -9.16 -41.48 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -4.60 Total: 7.23 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -3.42 Total: -15.50 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.31 Total: -39.91 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.07 Total: -13.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.16 Total: 16.70 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.49 Total: -1.24 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.32 -9.16 -41.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866824999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.863 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds