Wall clock time and date at job start Fri Apr 10 2020 23:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.29025 * 124.91202 * 2 1 4 4 C 1.31784 * 117.12246 * 179.97438 * 3 2 1 5 5 C 1.33645 * 114.49854 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.03679 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46945 * 90.00136 * 6 5 4 8 8 N 1.46505 * 109.46569 * 179.97438 * 7 6 5 9 9 C 1.34784 * 119.99604 * 179.97438 * 8 7 6 10 10 O 1.21609 * 119.99856 * 0.02562 * 9 8 7 11 11 C 1.47431 * 119.99756 * 180.02562 * 9 8 7 12 12 C 1.39220 * 120.28267 * 354.96104 * 11 9 8 13 13 C 1.38230 * 120.09210 * 179.97438 * 12 11 9 14 14 C 1.38822 * 120.67230 * 0.02562 * 13 12 11 15 15 C 1.37600 * 120.57323 * 359.97438 * 14 13 12 16 16 C 1.40705 * 119.88102 * 359.74919 * 15 14 13 17 17 C 1.40891 * 120.32852 * 180.25139 * 16 15 14 18 18 H 1.07996 * 120.00382 * 141.52740 * 17 16 15 19 19 C 1.40274 * 119.99715 * 321.52134 * 17 16 15 20 20 N 1.30630 * 119.99899 * 174.40605 * 19 17 16 21 21 Si 1.86795 * 120.00215 * 354.40833 * 19 17 16 22 22 H 1.48496 * 109.47401 * 89.36837 * 21 19 17 23 23 H 1.48504 * 109.47139 * 209.36680 * 21 19 17 24 24 H 1.48496 * 109.47249 * 329.36361 * 21 19 17 25 25 S 1.70976 * 124.91488 * 180.31132 * 2 1 3 26 26 H 1.08999 * 109.46947 * 89.97575 * 1 2 3 27 27 H 1.08994 * 109.46979 * 209.97695 * 1 2 3 28 28 H 1.09006 * 109.46969 * 329.97661 * 1 2 3 29 29 H 1.07993 * 122.75155 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47036 * 329.99774 * 6 5 4 31 31 H 1.09006 * 109.46983 * 210.00000 * 6 5 4 32 32 H 1.08995 * 109.47193 * 60.00360 * 7 6 5 33 33 H 1.08997 * 109.47002 * 299.99690 * 7 6 5 34 34 H 0.96994 * 120.00520 * 359.97438 * 8 7 6 35 35 H 1.07997 * 119.95639 * 359.95648 * 12 11 9 36 36 H 1.07996 * 119.65826 * 180.02562 * 13 12 11 37 37 H 1.08004 * 119.71693 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.06029 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00117 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 3.9355 -0.4006 0.0004 6 6 5.3575 -0.8994 0.0015 7 6 5.8375 -1.0686 1.4444 8 7 7.2198 -1.5541 1.4453 9 6 7.8548 -1.7772 2.6130 10 8 7.2803 -1.5759 3.6658 11 6 9.2460 -2.2652 2.6140 12 6 9.8744 -2.5972 1.4169 13 6 11.1791 -3.0539 1.4223 14 6 11.8775 -3.1878 2.6145 15 6 11.2833 -2.8676 3.8136 16 6 9.9582 -2.3950 3.8351 17 6 9.3423 -2.0593 5.0570 18 1 8.6885 -1.2016 5.1145 19 6 9.5783 -2.8391 6.1988 20 7 9.0966 -2.4673 7.3547 21 14 10.5813 -4.4094 6.0665 22 1 12.0187 -4.0973 6.2703 23 1 10.1321 -5.3726 7.1037 24 1 10.3904 -5.0067 4.7205 25 16 2.4857 -1.4020 -0.0076 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8901 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 4.2532 1.7001 0.0010 30 1 5.9953 -0.1797 -0.5116 31 1 5.4062 -1.8593 -0.5126 32 1 5.1997 -1.7884 1.9574 33 1 5.7888 -0.1087 1.9584 34 1 7.6779 -1.7150 0.6057 35 1 9.3417 -2.4981 0.4827 36 1 11.6598 -3.3090 0.4895 37 1 12.8962 -3.5464 2.6009 38 1 11.8342 -2.9753 4.7363 39 1 9.2601 -3.0063 8.1444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866824999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:14 Heat of formation + Delta-G solvation = -0.038653 kcal Electronic energy + Delta-G solvation = -22509.828298 eV Core-core repulsion = 19121.712246 eV Total energy + Delta-G solvation = -3388.116052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91489 -40.63294 -38.83483 -36.64768 -35.50443 -34.06601 -32.31187 -32.20813 -31.13655 -28.14224 -27.07986 -25.20989 -24.19077 -23.55581 -22.60204 -21.30267 -20.25156 -19.45948 -19.05481 -18.33760 -17.22005 -16.93937 -16.44293 -16.03375 -15.95478 -15.79220 -15.66460 -15.30959 -14.86606 -14.65073 -14.50218 -14.19356 -13.97217 -13.79402 -13.60993 -13.29269 -13.01176 -12.96097 -12.86782 -12.67892 -12.53369 -12.18995 -12.01680 -11.96207 -11.60182 -11.08699 -10.64562 -10.42762 -10.23891 -10.03696 -9.72971 -9.51353 -9.40060 -8.79978 -6.47409 -0.32548 0.33940 0.34550 0.73870 0.83902 1.23474 1.36695 1.45956 1.78554 2.10450 2.25587 2.39243 2.72327 3.26028 3.52109 3.86031 3.92624 3.99450 4.14100 4.25031 4.27236 4.41419 4.45290 4.55977 4.63612 4.65682 4.72643 4.82664 4.95357 4.97323 5.01313 5.03808 5.24244 5.31313 5.46083 5.57806 5.68391 5.86461 5.95344 6.26587 6.45893 6.66283 6.73090 6.78513 6.90058 7.62417 8.26042 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.002832 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.393790 B = 9884.295137 C =10741.617917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.035 3.965 3 N -0.507 5.507 4 C 0.028 3.972 5 C -0.227 4.227 6 C -0.037 4.037 7 C 0.132 3.868 8 N -0.723 5.723 9 C 0.552 3.448 10 O -0.578 6.578 11 C -0.261 4.261 12 C -0.040 4.040 13 C -0.225 4.225 14 C -0.063 4.063 15 C -0.245 4.245 16 C 0.098 3.902 17 C -0.444 4.444 18 H 0.059 0.941 19 C 0.031 3.969 20 N -0.858 5.858 21 Si 0.970 3.030 22 H -0.247 1.247 23 H -0.283 1.283 24 H -0.247 1.247 25 S 0.139 5.861 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.185 0.815 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.412 0.588 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.960 -1.214 -19.819 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.242 4.242 3 N -0.222 5.222 4 C -0.122 4.122 5 C -0.348 4.348 6 C -0.077 4.077 7 C 0.008 3.992 8 N -0.379 5.379 9 C 0.344 3.656 10 O -0.458 6.458 11 C -0.266 4.266 12 C -0.058 4.058 13 C -0.244 4.244 14 C -0.081 4.081 15 C -0.264 4.264 16 C 0.094 3.906 17 C -0.473 4.473 18 H 0.077 0.923 19 C -0.181 4.181 20 N -0.485 5.485 21 Si 0.793 3.207 22 H -0.172 1.172 23 H -0.210 1.210 24 H -0.171 1.171 25 S 0.394 5.606 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.202 0.798 30 H 0.133 0.867 31 H 0.121 0.879 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.250 0.750 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.120 0.880 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.973 -1.596 -18.806 21.347 hybrid contribution 0.836 0.611 0.705 1.253 sum -9.137 -0.986 -18.102 20.301 Atomic orbital electron populations 1.20626 0.82961 1.05139 1.05195 1.27674 1.03315 0.90897 1.02303 1.66331 1.05499 1.32761 1.17653 1.21994 0.91290 0.96640 1.02290 1.25850 1.00169 0.96303 1.12507 1.20133 0.88562 1.04122 0.94849 1.21160 0.82228 0.98541 0.97309 1.45666 1.14309 1.69599 1.08319 1.18591 0.86900 0.76862 0.83227 1.90783 1.68850 1.53252 1.32932 1.19837 0.93739 1.17726 0.95295 1.21276 0.95059 0.93894 0.95597 1.20995 0.95457 1.09863 0.98087 1.21278 0.99664 0.95010 0.92145 1.21283 0.94926 1.11821 0.98418 1.17844 0.91569 0.88571 0.92606 1.19680 1.23372 1.11779 0.92476 0.92324 1.27083 0.94926 1.02599 0.93501 1.69618 1.38817 1.39271 1.00832 0.85463 0.79030 0.76973 0.79249 1.17157 1.21006 1.17095 1.83946 0.97166 1.11740 1.67775 0.87828 0.88365 0.89252 0.79769 0.86653 0.87888 0.93762 0.93536 0.75008 0.83672 0.83500 0.84492 0.88019 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.46 71.24 0.75 -0.20 16 2 C 0.04 0.69 7.39 88.52 0.65 1.35 16 3 N -0.51 -12.36 10.54 -191.44 -2.02 -14.38 16 4 C 0.03 0.64 11.25 83.66 0.94 1.58 16 5 C -0.23 -4.70 5.85 24.64 0.14 -4.55 16 6 C -0.04 -0.67 5.86 29.85 0.18 -0.49 16 7 C 0.13 3.79 5.66 86.38 0.49 4.28 16 8 N -0.72 -22.88 5.51 -466.35 -2.57 -25.45 16 9 C 0.55 25.25 7.72 86.66 0.67 25.92 16 10 O -0.58 -33.19 13.68 -4.06 -0.06 -33.25 16 11 C -0.26 -11.84 5.92 -19.70 -0.12 -11.96 16 12 C -0.04 -1.34 9.52 22.50 0.21 -1.13 16 13 C -0.23 -7.11 10.03 22.41 0.22 -6.89 16 14 C -0.06 -2.25 10.01 22.26 0.22 -2.03 16 15 C -0.25 -11.12 6.94 22.72 0.16 -10.96 16 16 C 0.10 5.12 5.04 -21.11 -0.11 5.01 16 17 C -0.44 -26.96 8.08 23.42 0.19 -26.77 16 18 H 0.06 4.09 6.37 -2.91 -0.02 4.07 16 19 C 0.03 1.80 5.51 85.37 0.47 2.27 16 20 N -0.86 -51.32 13.92 21.88 0.30 -51.02 16 21 Si 0.97 44.33 24.48 68.60 1.68 46.01 16 22 H -0.25 -10.23 6.71 99.48 0.67 -9.57 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.25 -11.24 6.67 99.48 0.66 -10.58 16 25 S 0.14 2.60 23.18 -56.49 -1.31 1.29 16 26 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.19 3.54 8.06 -2.91 -0.02 3.51 16 30 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.41 9.41 6.53 -92.71 -0.61 8.81 16 35 H 0.15 3.42 6.43 -2.91 -0.02 3.40 16 36 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.10 4.61 4.87 -2.91 -0.01 4.60 16 39 H 0.29 15.60 8.29 -92.71 -0.77 14.83 16 Total: -1.00 -79.55 340.68 1.51 -78.04 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.41 Total: 23.31 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 5.07 Total: -24.57 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -4.28 Total: -90.84 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.06 Total: -33.25 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.68 Total: 46.01 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.31 Total: 1.29 kcal Total: -79.55 1.51 -78.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866824999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.003 kcal (2) G-P(sol) polarization free energy of solvation -79.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds