Wall clock time and date at job start Fri Apr 10 2020 23:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47384 * 2 1 4 4 C 1.37099 * 119.99679 * 262.97376 * 3 2 1 5 5 H 1.08003 * 119.99789 * 142.21016 * 4 3 2 6 6 C 1.38944 * 120.00259 * 322.21381 * 4 3 2 7 7 N 1.31418 * 120.00396 * 157.13841 * 6 4 3 8 8 Si 1.86796 * 120.00159 * 337.13510 * 6 4 3 9 9 H 1.48502 * 109.47047 * 95.20511 * 8 6 4 10 10 H 1.48497 * 109.47423 * 215.20270 * 8 6 4 11 11 H 1.48501 * 109.47417 * 335.20827 * 8 6 4 12 12 C 1.34773 * 119.99949 * 82.97598 * 3 2 1 13 13 O 1.21293 * 119.99663 * 180.02562 * 12 3 2 14 14 C 1.50695 * 120.00248 * 359.97438 * 12 3 2 15 15 C 1.50700 * 109.47287 * 180.02562 * 14 12 3 16 16 C 1.33717 * 122.07963 * 124.99856 * 15 14 12 17 17 S 1.76253 * 108.22007 * 179.97438 * 16 15 14 18 18 C 1.76181 * 89.83668 * 359.97438 * 17 16 15 19 19 C 1.47863 * 125.47133 * 180.26394 * 18 17 16 20 20 C 1.39543 * 120.14039 * 179.42043 * 19 18 17 21 21 C 1.37977 * 119.85306 * 179.74673 * 20 19 18 22 22 C 1.38342 * 120.14327 * 0.52733 * 21 20 19 23 23 C 1.38359 * 120.28668 * 359.74604 * 22 21 20 24 24 C 1.37960 * 120.14325 * 359.97438 * 23 22 21 25 25 N 1.30229 * 109.05238 * 0.02562 * 18 17 16 26 26 H 1.08998 * 109.47335 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46924 * 300.00326 * 1 2 3 28 28 H 1.09004 * 109.46656 * 60.00085 * 1 2 3 29 29 H 1.08999 * 109.46924 * 239.99674 * 2 1 3 30 30 H 1.09002 * 109.47173 * 119.99928 * 2 1 3 31 31 H 0.96991 * 120.00435 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47309 * 60.00093 * 14 12 3 33 33 H 1.09000 * 109.47400 * 300.00319 * 14 12 3 34 34 H 1.08003 * 125.89092 * 359.95514 * 16 15 14 35 35 H 1.07995 * 120.07534 * 0.02562 * 20 19 18 36 36 H 1.08007 * 119.92761 * 180.27354 * 21 20 19 37 37 H 1.08004 * 119.86026 * 179.72169 * 22 21 20 38 38 H 1.08004 * 119.92275 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.07573 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3838 1.9790 -1.1784 5 1 2.1623 3.0227 -1.3459 6 6 3.0392 1.2421 -2.1573 7 7 2.9967 1.6316 -3.4117 8 14 3.9807 -0.3021 -1.6903 9 1 3.1112 -1.4901 -1.8857 10 1 5.1866 -0.4251 -2.5480 11 1 4.3925 -0.2192 -0.2660 12 6 2.1085 2.0641 1.1584 13 8 2.5124 3.2078 1.1583 14 6 1.7063 1.4071 2.4536 15 6 1.9002 2.3773 3.5904 16 6 0.9097 2.6931 4.4313 17 16 1.5333 3.8468 5.6088 18 6 3.1109 3.7844 4.8270 19 6 4.3098 4.5380 5.2526 20 6 5.5108 4.3951 4.5565 21 6 6.6245 5.1051 4.9556 22 6 6.5553 5.9488 6.0497 23 6 5.3690 6.0906 6.7476 24 6 4.2467 5.3907 6.3554 25 7 3.0527 2.9642 3.8172 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.4545 1.1175 -4.0950 32 1 2.3231 0.5240 2.6200 33 1 0.6579 1.1135 2.4019 34 1 -0.0987 2.3080 4.3950 35 1 5.5672 3.7338 3.7046 36 1 7.5535 4.9989 4.4150 37 1 7.4311 6.4990 6.3608 38 1 5.3217 6.7505 7.6012 39 1 3.3212 5.5025 6.9007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:17 Heat of formation + Delta-G solvation = 50.867511 kcal Electronic energy + Delta-G solvation = -23183.566763 eV Core-core repulsion = 19797.658167 eV Total energy + Delta-G solvation = -3385.908595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97283 -39.03777 -38.21155 -35.08907 -32.90044 -32.21710 -31.08394 -30.36438 -29.68472 -28.02362 -25.21534 -24.37174 -22.90858 -22.73055 -21.61285 -19.49324 -18.82417 -17.68048 -16.88612 -16.72374 -16.14102 -15.72040 -15.56799 -14.90883 -14.52775 -14.30330 -14.21450 -13.67656 -13.53301 -13.31593 -13.04943 -12.94192 -12.82540 -12.54235 -12.31618 -12.29444 -11.61323 -11.46388 -11.30574 -11.23185 -11.09919 -11.01561 -10.64290 -10.09485 -9.83492 -9.78152 -9.45545 -9.09106 -9.03551 -9.02272 -8.46901 -8.03745 -7.68893 -6.35191 -3.90607 0.32869 1.30723 1.40747 1.56890 1.78511 3.04884 3.06154 3.25024 3.31354 3.78389 3.81562 4.02405 4.19213 4.49707 4.78284 4.83163 4.93538 5.00544 5.05923 5.23385 5.33128 5.42040 5.45557 5.47933 5.61870 5.71505 5.77860 5.83106 5.91966 5.97079 6.05621 6.17165 6.26742 6.34333 6.41997 6.43025 6.47588 6.74501 6.82949 7.60405 7.98200 8.34083 8.57988 9.03773 9.37752 9.85161 10.77288 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.003836 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.542208 B = 7297.174848 C = 8525.478095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.086 3.914 3 N -0.470 5.470 4 C -0.311 4.311 5 H 0.103 0.897 6 C 0.061 3.939 7 N -0.866 5.866 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.263 1.263 12 C 0.473 3.527 13 O -0.545 6.545 14 C -0.073 4.073 15 C 0.107 3.893 16 C -0.249 4.249 17 S 0.057 5.943 18 C 0.115 3.885 19 C -0.019 4.019 20 C -0.068 4.068 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.101 4.101 25 N -0.422 5.422 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.273 0.727 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.178 0.822 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 0.924 20.280 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.038 4.038 3 N -0.193 5.193 4 C -0.438 4.438 5 H 0.120 0.880 6 C -0.145 4.145 7 N -0.502 5.502 8 Si 0.699 3.301 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.187 1.187 12 C 0.260 3.740 13 O -0.425 6.425 14 C -0.116 4.116 15 C -0.026 4.026 16 C -0.387 4.387 17 S 0.313 5.687 18 C -0.161 4.161 19 C -0.023 4.023 20 C -0.089 4.089 21 C -0.139 4.139 22 C -0.128 4.128 23 C -0.140 4.140 24 C -0.121 4.121 25 N -0.134 5.134 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.195 0.805 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.134 1.908 20.604 20.692 hybrid contribution 0.190 -1.543 -0.739 1.722 sum 0.324 0.365 19.865 19.871 Atomic orbital electron populations 1.22155 0.96421 1.00972 1.02583 1.21794 0.94556 0.85922 1.01550 1.43742 1.57901 1.11441 1.06214 1.18991 1.36808 0.98472 0.89524 0.87956 1.25337 0.96295 0.98097 0.94729 1.69770 1.40408 1.40325 0.99727 0.87036 0.80401 0.82883 0.79793 1.20279 1.21390 1.18749 1.19888 0.82325 0.88005 0.83782 1.90594 1.47988 1.17969 1.85939 1.20482 1.03233 0.96832 0.91085 1.19636 0.87334 0.98590 0.97023 1.26677 1.04698 1.06008 1.01353 1.84552 1.08334 1.42926 1.32859 1.25789 0.95542 0.99891 0.94910 1.17860 0.90498 0.97329 0.96624 1.21429 0.90956 0.97844 0.98666 1.21183 0.98665 0.96880 0.97189 1.21292 0.97881 0.98180 0.95495 1.20979 0.92673 0.99992 1.00391 1.21128 0.98994 0.96228 0.95788 1.66253 1.25955 1.07619 1.13606 0.92654 0.93084 0.91443 0.90630 0.92346 0.91710 0.88352 0.88352 0.80490 0.84290 0.85357 0.85796 0.85562 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 10.11 37.16 0.38 -2.28 16 2 C 0.09 1.69 4.46 -4.04 -0.02 1.67 16 3 N -0.47 -11.46 2.18 -114.82 -0.25 -11.71 16 4 C -0.31 -8.94 9.35 -14.93 -0.14 -9.08 16 5 H 0.10 3.33 7.92 -52.48 -0.42 2.91 16 6 C 0.06 1.70 5.24 -17.47 -0.09 1.61 16 7 N -0.87 -25.35 13.96 55.50 0.77 -24.57 16 8 Si 0.87 20.80 25.11 -169.99 -4.27 16.53 16 9 H -0.28 -6.07 6.67 56.52 0.38 -5.69 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.47 11.26 7.53 -10.99 -0.08 11.17 16 13 O -0.55 -15.31 15.30 5.55 0.08 -15.22 16 14 C -0.07 -1.30 4.78 -29.04 -0.14 -1.44 16 15 C 0.11 1.91 5.61 -84.40 -0.47 1.44 16 16 C -0.25 -3.59 11.02 29.15 0.32 -3.27 16 17 S 0.06 0.76 22.40 -107.50 -2.41 -1.65 16 18 C 0.11 1.88 7.35 -14.29 -0.11 1.78 16 19 C -0.02 -0.28 5.87 -104.98 -0.62 -0.90 16 20 C -0.07 -0.98 9.68 -39.19 -0.38 -1.36 16 21 C -0.12 -1.39 10.03 -39.64 -0.40 -1.78 16 22 C -0.11 -1.06 10.04 -39.50 -0.40 -1.46 16 23 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 24 C -0.10 -1.17 9.61 -39.19 -0.38 -1.54 16 25 N -0.42 -8.17 9.22 -7.55 -0.07 -8.24 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.74 6.38 -51.93 -0.33 0.41 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.60 3.72 -51.93 -0.19 1.41 16 30 H 0.06 0.98 6.74 -51.93 -0.35 0.63 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.10 1.59 7.42 -51.93 -0.39 1.20 16 33 H 0.10 1.42 6.21 -51.93 -0.32 1.09 16 34 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16 35 H 0.14 2.25 7.82 -52.49 -0.41 1.84 16 36 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.12 1.21 7.30 -52.49 -0.38 0.83 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -34.73 340.10 -8.42 -43.14 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.49 Total: 3.61 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.92 Total: -7.02 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.45 Total: -44.52 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.08 Total: -15.22 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.27 Total: 16.53 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.41 Total: -1.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.73 -8.42 -43.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.012 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds