Wall clock time and date at job start Fri Apr 10 2020 23:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47384 * 2 1 4 4 C 1.37099 * 119.99679 * 262.97376 * 3 2 1 5 5 H 1.08003 * 119.99789 * 142.21016 * 4 3 2 6 6 C 1.38944 * 120.00259 * 322.21381 * 4 3 2 7 7 N 1.31418 * 120.00396 * 157.13841 * 6 4 3 8 8 Si 1.86796 * 120.00159 * 337.13510 * 6 4 3 9 9 H 1.48502 * 109.47047 * 95.20511 * 8 6 4 10 10 H 1.48497 * 109.47423 * 215.20270 * 8 6 4 11 11 H 1.48501 * 109.47417 * 335.20827 * 8 6 4 12 12 C 1.34773 * 119.99949 * 82.97598 * 3 2 1 13 13 O 1.21293 * 119.99663 * 180.02562 * 12 3 2 14 14 C 1.50695 * 120.00248 * 359.97438 * 12 3 2 15 15 C 1.50700 * 109.47287 * 180.02562 * 14 12 3 16 16 C 1.33717 * 122.07963 * 124.99856 * 15 14 12 17 17 S 1.76253 * 108.22007 * 179.97438 * 16 15 14 18 18 C 1.76181 * 89.83668 * 359.97438 * 17 16 15 19 19 C 1.47863 * 125.47133 * 180.26394 * 18 17 16 20 20 C 1.39543 * 120.14039 * 179.42043 * 19 18 17 21 21 C 1.37977 * 119.85306 * 179.74673 * 20 19 18 22 22 C 1.38342 * 120.14327 * 0.52733 * 21 20 19 23 23 C 1.38359 * 120.28668 * 359.74604 * 22 21 20 24 24 C 1.37960 * 120.14325 * 359.97438 * 23 22 21 25 25 N 1.30229 * 109.05238 * 0.02562 * 18 17 16 26 26 H 1.08998 * 109.47335 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46924 * 300.00326 * 1 2 3 28 28 H 1.09004 * 109.46656 * 60.00085 * 1 2 3 29 29 H 1.08999 * 109.46924 * 239.99674 * 2 1 3 30 30 H 1.09002 * 109.47173 * 119.99928 * 2 1 3 31 31 H 0.96991 * 120.00435 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47309 * 60.00093 * 14 12 3 33 33 H 1.09000 * 109.47400 * 300.00319 * 14 12 3 34 34 H 1.08003 * 125.89092 * 359.95514 * 16 15 14 35 35 H 1.07995 * 120.07534 * 0.02562 * 20 19 18 36 36 H 1.08007 * 119.92761 * 180.27354 * 21 20 19 37 37 H 1.08004 * 119.86026 * 179.72169 * 22 21 20 38 38 H 1.08004 * 119.92275 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.07573 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3838 1.9790 -1.1784 5 1 2.1623 3.0227 -1.3459 6 6 3.0392 1.2421 -2.1573 7 7 2.9967 1.6316 -3.4117 8 14 3.9807 -0.3021 -1.6903 9 1 3.1112 -1.4901 -1.8857 10 1 5.1866 -0.4251 -2.5480 11 1 4.3925 -0.2192 -0.2660 12 6 2.1085 2.0641 1.1584 13 8 2.5124 3.2078 1.1583 14 6 1.7063 1.4071 2.4536 15 6 1.9002 2.3773 3.5904 16 6 0.9097 2.6931 4.4313 17 16 1.5333 3.8468 5.6088 18 6 3.1109 3.7844 4.8270 19 6 4.3098 4.5380 5.2526 20 6 5.5108 4.3951 4.5565 21 6 6.6245 5.1051 4.9556 22 6 6.5553 5.9488 6.0497 23 6 5.3690 6.0906 6.7476 24 6 4.2467 5.3907 6.3554 25 7 3.0527 2.9642 3.8172 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.4545 1.1175 -4.0950 32 1 2.3231 0.5240 2.6200 33 1 0.6579 1.1135 2.4019 34 1 -0.0987 2.3080 4.3950 35 1 5.5672 3.7338 3.7046 36 1 7.5535 4.9989 4.4150 37 1 7.4311 6.4990 6.3608 38 1 5.3217 6.7505 7.6012 39 1 3.3212 5.5025 6.9007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:16 Heat of formation + Delta-G solvation = 27.871556 kcal Electronic energy + Delta-G solvation = -23184.563942 eV Core-core repulsion = 19797.658167 eV Total energy + Delta-G solvation = -3386.905775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28505 -40.29542 -39.55764 -36.97030 -34.46529 -33.83773 -31.98466 -31.60118 -31.25328 -29.34770 -26.79357 -25.83523 -24.42292 -23.64089 -22.70892 -21.07065 -20.07518 -18.93159 -18.78023 -17.96883 -17.69223 -17.43520 -16.66048 -15.99099 -15.90043 -15.79577 -15.45277 -15.14546 -14.91285 -14.51189 -14.41752 -14.25124 -14.12029 -13.99824 -13.92285 -13.61677 -13.08976 -12.91622 -12.67855 -12.56153 -12.44763 -12.24121 -12.03587 -11.94533 -11.58441 -11.05967 -10.83995 -10.62200 -10.34121 -10.14555 -9.94677 -9.68989 -9.10515 -8.52320 -6.12436 -0.72289 0.31675 0.41737 0.56465 0.65656 1.16195 1.30119 1.42492 1.86426 1.99155 2.16618 2.76088 2.87788 2.94555 3.00269 3.72492 3.96151 3.99427 4.03949 4.08385 4.15637 4.23333 4.30321 4.43692 4.46309 4.49345 4.52500 4.56773 4.74084 4.87671 4.96399 5.02920 5.06340 5.11218 5.41573 5.46219 5.50433 5.53906 5.56035 5.97774 6.03380 6.59221 6.85403 6.97359 7.32581 7.92612 8.65749 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.003836 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.542208 B = 7297.174848 C = 8525.478095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.075 3.925 3 N -0.481 5.481 4 C -0.329 4.329 5 H 0.037 0.963 6 C 0.014 3.986 7 N -0.912 5.912 8 Si 0.945 3.055 9 H -0.234 1.234 10 H -0.289 1.289 11 H -0.264 1.264 12 C 0.464 3.536 13 O -0.603 6.603 14 C -0.058 4.058 15 C 0.066 3.934 16 C -0.240 4.240 17 S 0.125 5.875 18 C 0.087 3.913 19 C -0.048 4.048 20 C -0.099 4.099 21 C -0.127 4.127 22 C -0.101 4.101 23 C -0.114 4.114 24 C -0.103 4.103 25 N -0.475 5.475 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.279 0.721 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.215 0.785 35 H 0.102 0.898 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 -0.629 24.048 24.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.047 4.047 3 N -0.204 5.204 4 C -0.457 4.457 5 H 0.055 0.945 6 C -0.188 4.188 7 N -0.550 5.550 8 Si 0.768 3.232 9 H -0.158 1.158 10 H -0.216 1.216 11 H -0.188 1.188 12 C 0.253 3.747 13 O -0.486 6.486 14 C -0.100 4.100 15 C -0.067 4.067 16 C -0.379 4.379 17 S 0.382 5.618 18 C -0.188 4.188 19 C -0.052 4.052 20 C -0.121 4.121 21 C -0.145 4.145 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.123 4.123 25 N -0.188 5.188 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.232 0.768 35 H 0.121 0.879 36 H 0.160 0.840 37 H 0.178 0.822 38 H 0.183 0.817 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.564 0.320 24.382 24.390 hybrid contribution 0.381 -0.867 -1.838 2.068 sum -0.183 -0.546 22.543 22.551 Atomic orbital electron populations 1.22105 0.93696 1.03515 1.02067 1.22107 0.96942 0.82965 1.02667 1.43908 1.58202 1.13300 1.04974 1.18571 1.38589 0.96438 0.92135 0.94478 1.26106 0.96382 1.02266 0.94056 1.69883 1.41450 1.42686 1.01015 0.85888 0.78788 0.79551 0.78958 1.15831 1.21619 1.18829 1.21004 0.80750 0.87370 0.85565 1.90556 1.50169 1.20788 1.87105 1.20422 1.05655 0.96783 0.87166 1.19770 0.88169 1.00287 0.98439 1.27164 1.05450 1.04933 1.00337 1.84168 1.05356 1.41344 1.30960 1.26205 0.97763 0.99808 0.95043 1.18108 0.90066 0.98803 0.98204 1.21317 0.92809 0.99211 0.98743 1.21407 0.98164 0.96813 0.98123 1.21723 0.99309 0.96911 0.94001 1.21468 0.91655 0.99176 1.00840 1.21380 1.00590 0.95559 0.94771 1.66216 1.27718 1.09406 1.15489 0.88449 0.91159 0.94491 0.92062 0.88386 0.91124 0.86556 0.84377 0.76847 0.87940 0.84047 0.82193 0.81702 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 10.11 71.98 0.73 -3.92 16 2 C 0.08 2.81 4.46 86.38 0.39 3.20 16 3 N -0.48 -23.99 2.18 -635.55 -1.39 -25.38 16 4 C -0.33 -20.17 9.35 84.04 0.79 -19.38 16 5 H 0.04 2.68 7.92 -2.91 -0.02 2.66 16 6 C 0.01 0.80 5.24 84.92 0.45 1.24 16 7 N -0.91 -55.99 13.96 21.66 0.30 -55.69 16 8 Si 0.95 43.40 25.11 68.60 1.72 45.12 16 9 H -0.23 -9.17 6.67 99.48 0.66 -8.51 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.46 22.73 7.53 87.66 0.66 23.39 16 13 O -0.60 -36.22 15.30 -3.07 -0.05 -36.27 16 14 C -0.06 -1.98 4.78 29.10 0.14 -1.84 16 15 C 0.07 2.32 5.61 41.61 0.23 2.56 16 16 C -0.24 -6.39 11.02 66.79 0.74 -5.66 16 17 S 0.12 3.08 22.40 -56.49 -1.27 1.82 16 18 C 0.09 2.92 7.35 87.48 0.64 3.56 16 19 C -0.05 -1.44 5.87 -20.10 -0.12 -1.55 16 20 C -0.10 -3.09 9.68 22.52 0.22 -2.87 16 21 C -0.13 -2.93 10.03 22.23 0.22 -2.70 16 22 C -0.10 -1.70 10.04 22.32 0.22 -1.48 16 23 C -0.11 -1.85 10.03 22.23 0.22 -1.63 16 24 C -0.10 -2.22 9.61 22.52 0.22 -2.00 16 25 N -0.47 -19.12 9.22 -177.80 -1.64 -20.76 16 26 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.07 1.81 6.38 -2.39 -0.02 1.79 16 28 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.06 2.45 3.72 -2.39 -0.01 2.45 16 30 H 0.10 2.88 6.74 -2.39 -0.02 2.87 16 31 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.12 3.49 7.42 -2.39 -0.02 3.47 16 33 H 0.14 3.48 6.21 -2.39 -0.01 3.46 16 34 H 0.21 3.82 8.06 -2.91 -0.02 3.79 16 35 H 0.10 3.82 7.82 -2.91 -0.02 3.80 16 36 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.14 2.41 7.30 -2.91 -0.02 2.39 16 Total: -1.00 -86.61 340.10 4.46 -82.14 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 1.03 Total: 18.11 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 5.74 Total: -9.10 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -2.72 Total: -101.83 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.05 Total: -36.27 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.72 Total: 45.12 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.27 Total: 1.82 kcal Total: -86.61 4.46 -82.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.016 kcal (2) G-P(sol) polarization free energy of solvation -86.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds