Wall clock time and date at job start Fri Apr 10 2020 23:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47086 * 2 1 4 4 C 1.50703 * 109.47283 * 120.00042 * 2 1 3 5 5 H 1.07993 * 120.00169 * 119.99917 * 4 2 1 6 6 C 1.37874 * 119.99746 * 300.00206 * 4 2 1 7 7 N 1.31516 * 120.00478 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00027 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47214 * 89.99996 * 8 6 4 10 10 H 1.48497 * 109.47297 * 210.00248 * 8 6 4 11 11 H 1.48502 * 109.46808 * 330.00081 * 8 6 4 12 12 N 1.46496 * 109.47334 * 240.00254 * 2 1 3 13 13 C 1.46501 * 119.99904 * 299.99871 * 12 2 1 14 14 C 1.34779 * 120.00234 * 119.99876 * 12 2 1 15 15 O 1.21696 * 119.99894 * 6.00200 * 14 12 2 16 16 C 1.46591 * 119.99995 * 186.00084 * 14 12 2 17 17 C 1.36881 * 126.12149 * 186.72022 * 16 14 12 18 18 N 1.30624 * 114.04032 * 179.97438 * 17 16 14 19 19 C 1.30346 * 117.29979 * 0.02562 * 18 17 16 20 20 C 1.47803 * 124.74928 * 180.02562 * 19 18 17 21 21 C 1.39585 * 120.14200 * 179.70133 * 20 19 18 22 22 C 1.37956 * 119.84816 * 179.72001 * 21 20 19 23 23 C 1.38359 * 120.14726 * 0.55105 * 22 21 20 24 24 C 1.38360 * 120.29501 * 359.72509 * 23 22 21 25 25 C 1.37955 * 120.14703 * 359.97438 * 24 23 22 26 26 S 1.70922 * 110.49687 * 359.74585 * 19 18 17 27 27 H 1.08999 * 109.47095 * 299.99826 * 1 2 3 28 28 H 1.08995 * 109.47010 * 59.99972 * 1 2 3 29 29 H 1.09004 * 109.46803 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00330 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47438 * 95.90847 * 13 12 2 32 32 H 1.09003 * 109.47144 * 215.90940 * 13 12 2 33 33 H 1.08999 * 109.47417 * 335.90733 * 13 12 2 34 34 H 1.07999 * 122.97791 * 0.02562 * 17 16 14 35 35 H 1.08008 * 120.07909 * 359.97271 * 21 20 19 36 36 H 1.08006 * 119.93010 * 180.29356 * 22 21 20 37 37 H 1.07999 * 119.85175 * 179.69711 * 23 22 21 38 38 H 1.07997 * 119.93049 * 180.02562 * 24 23 22 39 39 H 1.07999 * 120.08008 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.6297 -0.5459 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4859 -2.5662 3.7119 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0931 -1.4280 14 6 2.7933 -0.0355 -2.0833 15 8 3.1775 1.0930 -1.8389 16 6 3.1732 -0.6825 -3.3427 17 6 4.0528 -0.1909 -4.2691 18 7 4.2184 -0.9645 -5.3085 19 6 3.5444 -2.0798 -5.3372 20 6 3.6066 -3.0739 -6.4292 21 6 2.8460 -4.2421 -6.3577 22 6 2.9043 -5.1632 -7.3831 23 6 3.7230 -4.9365 -8.4751 24 6 4.4840 -3.7833 -8.5494 25 6 4.4303 -2.8511 -7.5339 26 16 2.5845 -2.2352 -3.9316 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7089 1.1613 3.4844 31 1 0.7976 -2.1451 -2.0867 32 1 2.5054 -2.6079 -1.8929 33 1 1.4273 -2.5700 -0.4770 34 1 4.5650 0.7525 -4.1508 35 1 2.2100 -4.4226 -5.5035 36 1 2.3126 -6.0653 -7.3313 37 1 3.7687 -5.6631 -9.2728 38 1 5.1208 -3.6121 -9.4047 39 1 5.0244 -1.9512 -7.5933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441958.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:36 Heat of formation + Delta-G solvation = 22.850526 kcal Electronic energy + Delta-G solvation = -22891.780930 eV Core-core repulsion = 19504.657427 eV Total energy + Delta-G solvation = -3387.123503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24898 -40.53886 -39.53218 -37.25352 -34.96007 -33.42968 -31.94084 -31.80331 -30.07398 -28.03462 -27.33717 -26.87878 -24.37058 -23.40172 -23.14863 -21.41303 -20.15402 -19.33449 -18.53103 -17.96393 -17.42720 -17.22428 -16.66788 -16.52632 -16.05326 -15.80127 -15.47490 -15.25263 -14.68634 -14.54951 -14.41956 -14.33737 -14.18069 -13.67617 -13.59984 -13.41900 -13.01955 -12.83565 -12.79162 -12.55949 -12.27087 -12.23618 -12.12078 -12.02418 -11.27489 -11.07921 -10.88595 -10.70485 -10.55005 -10.35706 -9.91616 -9.60561 -9.17179 -8.16988 -6.33824 -1.12680 0.07371 0.36934 0.45914 0.51327 1.41579 1.43433 1.50627 1.53331 2.08390 2.17417 2.43194 2.88496 2.89436 3.11737 3.57652 3.79876 4.00498 4.08429 4.08678 4.16812 4.29852 4.44349 4.51864 4.58162 4.70159 4.84143 4.85990 4.88333 4.98064 5.00049 5.12294 5.41887 5.46145 5.48485 5.50655 5.56727 5.61591 5.96855 5.99362 6.11093 6.48822 6.60585 6.72279 7.11769 7.38200 8.87799 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.002988 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.803919 B = 9367.764558 C = 9811.916081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.264 3.736 3 H 0.012 0.988 4 C -0.542 4.542 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.259 1.259 12 N -0.591 5.591 13 C 0.065 3.935 14 C 0.574 3.426 15 O -0.587 6.587 16 C -0.326 4.326 17 C 0.120 3.880 18 N -0.497 5.497 19 C 0.050 3.950 20 C -0.058 4.058 21 C -0.103 4.103 22 C -0.118 4.118 23 C -0.097 4.097 24 C -0.126 4.126 25 C -0.086 4.086 26 S 0.290 5.710 27 H 0.072 0.928 28 H 0.021 0.979 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.185 0.815 35 H 0.138 0.862 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.150 0.850 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 -16.758 -21.290 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.162 3.838 3 H 0.030 0.970 4 C -0.580 4.580 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.790 3.210 9 H -0.211 1.211 10 H -0.204 1.204 11 H -0.183 1.183 12 N -0.320 5.320 13 C -0.079 4.079 14 C 0.362 3.638 15 O -0.471 6.471 16 C -0.451 4.451 17 C -0.040 4.040 18 N -0.211 5.211 19 C -0.218 4.218 20 C -0.062 4.062 21 C -0.124 4.124 22 C -0.136 4.136 23 C -0.116 4.116 24 C -0.144 4.144 25 C -0.108 4.108 26 S 0.553 5.447 27 H 0.090 0.910 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.202 0.798 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.175 0.825 38 H 0.167 0.833 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.364 -16.746 -21.034 26.920 hybrid contribution 0.926 1.457 1.308 2.166 sum 2.290 -15.289 -19.726 25.062 Atomic orbital electron populations 1.21900 0.96402 1.00610 1.00239 1.18666 0.91976 0.92239 0.80890 0.96987 1.21545 1.32199 1.13318 0.90956 0.91903 1.25717 0.94928 0.95607 1.01968 1.70011 1.37061 1.23767 1.24587 0.85451 0.77708 0.79321 0.78520 1.21076 1.20423 1.18319 1.48108 1.48383 1.12967 1.22548 1.22053 1.00900 0.80992 1.03974 1.17238 0.78759 0.85178 0.82600 1.90751 1.56951 1.20871 1.78510 1.26079 1.11915 1.03808 1.03249 1.22388 0.94780 0.99889 0.86992 1.66455 1.25267 1.04266 1.25128 1.26358 0.98990 0.95785 1.00714 1.18099 1.01719 0.93361 0.92983 1.21443 0.98084 0.92516 1.00348 1.21443 0.99325 0.99751 0.93048 1.21781 0.94286 0.97109 0.98441 1.21465 1.00122 0.93994 0.98786 1.21428 0.96792 0.99862 0.92738 1.83661 1.39998 1.12950 1.08107 0.90981 0.96002 0.92883 0.92502 0.90046 0.90494 0.88113 0.79838 0.84465 0.82324 0.82483 0.83264 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.97 71.98 0.65 -5.66 16 2 C 0.26 13.75 2.62 44.25 0.12 13.87 16 3 H 0.01 0.76 6.91 -2.39 -0.02 0.74 16 4 C -0.54 -29.22 7.95 25.60 0.20 -29.02 16 5 H 0.06 3.28 7.43 -2.91 -0.02 3.26 16 6 C 0.02 0.97 5.30 84.65 0.45 1.41 16 7 N -0.92 -52.29 11.32 21.45 0.24 -52.04 16 8 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 N -0.59 -25.77 2.75 -831.61 -2.29 -28.06 16 13 C 0.06 2.06 7.79 127.77 0.99 3.05 16 14 C 0.57 25.81 7.63 86.42 0.66 26.47 16 15 O -0.59 -31.62 16.22 -4.34 -0.07 -31.69 16 16 C -0.33 -11.50 6.25 24.13 0.15 -11.35 16 17 C 0.12 4.05 11.16 84.55 0.94 4.99 16 18 N -0.50 -15.26 10.04 -191.90 -1.93 -17.18 16 19 C 0.05 1.31 7.13 87.45 0.62 1.93 16 20 C -0.06 -1.23 5.87 -20.10 -0.12 -1.35 16 21 C -0.10 -1.60 9.57 22.53 0.22 -1.39 16 22 C -0.12 -1.27 10.03 22.23 0.22 -1.05 16 23 C -0.10 -0.96 10.04 22.33 0.22 -0.74 16 24 C -0.13 -1.64 10.03 22.23 0.22 -1.42 16 25 C -0.09 -1.67 9.67 22.53 0.22 -1.45 16 26 S 0.29 7.18 16.91 -56.49 -0.96 6.23 16 27 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 2.23 7.67 -2.39 -0.02 2.21 16 30 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.08 2.12 7.54 -2.39 -0.02 2.10 16 32 H 0.08 2.11 5.13 -17.52 -0.09 2.02 16 33 H 0.10 3.27 7.12 -2.39 -0.02 3.26 16 34 H 0.18 6.06 8.06 -2.91 -0.02 6.03 16 35 H 0.14 1.71 7.22 -2.91 -0.02 1.69 16 36 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 37 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 38 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.12 2.60 7.79 -2.91 -0.02 2.57 16 Total: -1.00 -72.27 339.68 3.80 -68.47 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.00 Total: 11.39 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 5.77 Total: -1.69 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -3.97 Total: -97.29 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.07 Total: -31.69 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 7.18 SS G_CDS: -0.96 Total: 6.23 kcal Total: -72.27 3.80 -68.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441958.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.319 kcal (2) G-P(sol) polarization free energy of solvation -72.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds