Wall clock time and date at job start Fri Apr 10 2020 23:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99961 * 2 1 4 4 O 1.21570 * 120.00080 * 359.97438 * 3 2 1 5 5 C 1.47704 * 119.99971 * 180.02562 * 3 2 1 6 6 C 1.39800 * 120.52088 * 359.97438 * 5 3 2 7 7 C 1.39493 * 118.21289 * 179.77391 * 6 5 3 8 8 C 1.48349 * 120.44027 * 180.24080 * 7 6 5 9 9 C 1.39420 * 120.04757 * 0.02562 * 8 7 6 10 10 C 1.37851 * 119.94529 * 179.74424 * 9 8 7 11 11 C 1.38997 * 120.04959 * 0.52837 * 10 9 8 12 12 O 1.35702 * 119.94911 * 179.74266 * 11 10 9 13 13 C 1.34812 * 116.99801 * 174.42595 * 12 11 10 14 14 H 1.07999 * 120.00538 * 5.06505 * 13 12 11 15 15 C 1.38653 * 119.99937 * 185.05696 * 13 12 11 16 16 N 1.31564 * 119.99528 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00070 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47285 * 59.99765 * 17 15 13 19 19 H 1.48501 * 109.46673 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46968 * 299.99695 * 17 15 13 21 21 C 1.38996 * 120.10592 * 359.72250 * 11 10 9 22 22 C 1.37851 * 120.04691 * 0.02562 * 21 11 10 23 23 C 1.39479 * 119.12305 * 0.50530 * 7 6 5 24 24 N 1.31768 * 120.95680 * 359.48000 * 23 7 6 25 25 C 1.31967 * 121.98193 * 0.24983 * 24 23 7 26 26 F 1.35100 * 119.61698 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.46693 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46862 * 299.99749 * 1 2 3 29 29 H 1.08992 * 109.47449 * 59.99782 * 1 2 3 30 30 H 0.97001 * 120.00252 * 180.02562 * 2 1 3 31 31 H 1.08004 * 120.89169 * 0.02562 * 6 5 3 32 32 H 1.07994 * 120.03342 * 359.97113 * 9 8 7 33 33 H 1.07995 * 119.97912 * 180.22759 * 10 9 8 34 34 H 0.97002 * 119.99199 * 179.97438 * 16 15 13 35 35 H 1.08000 * 119.98123 * 180.02562 * 21 11 10 36 36 H 1.08000 * 120.02549 * 179.97438 * 22 21 11 37 37 H 1.08000 * 119.51686 * 179.75018 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2200 -0.0005 5 6 3.6159 1.1672 -0.0006 6 6 4.3259 -0.0371 -0.0006 7 6 5.7197 0.0190 -0.0060 8 6 6.5222 -1.2287 -0.0116 9 6 5.8848 -2.4686 -0.0121 10 6 6.6325 -3.6267 -0.0227 11 6 8.0208 -3.5588 -0.0217 12 8 8.7549 -4.7002 -0.0269 13 6 10.0915 -4.5676 -0.1424 14 1 10.5387 -3.5846 -0.1431 15 6 10.8922 -5.6935 -0.2600 16 7 10.3474 -6.8910 -0.2594 17 14 12.7443 -5.5099 -0.4193 18 1 13.2777 -4.8140 0.7791 19 1 13.3671 -6.8534 -0.5304 20 1 13.0604 -4.7164 -1.6341 21 6 8.6585 -2.3238 -0.0160 22 6 7.9148 -1.1631 -0.0107 23 6 6.3489 1.2638 -0.0004 24 7 5.6462 2.3785 -0.0004 25 6 4.3266 2.3729 -0.0008 26 9 3.6539 3.5445 -0.0013 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.9501 -0.8400 -0.0004 31 1 3.8091 -0.9855 -0.0006 32 1 4.8062 -2.5219 -0.0079 33 1 6.1393 -4.5875 -0.0267 34 1 10.9076 -7.6786 -0.3421 35 1 9.7373 -2.2734 -0.0157 36 1 8.4107 -0.2036 -0.0058 37 1 7.4277 1.3147 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:35 Heat of formation + Delta-G solvation = -38.681783 kcal Electronic energy + Delta-G solvation = -24446.266318 eV Core-core repulsion = 20490.261398 eV Total energy + Delta-G solvation = -3956.004920 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.101 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -48.93431 -40.69635 -39.49161 -38.93769 -36.78367 -34.97581 -33.22506 -32.64734 -31.83710 -30.52401 -28.01103 -27.35533 -25.68685 -24.81958 -23.49947 -22.03937 -21.40874 -20.57533 -18.65297 -18.32753 -17.71906 -17.46757 -17.08597 -16.24560 -15.86642 -15.50863 -15.25574 -14.93953 -14.58289 -14.53863 -14.08682 -13.95005 -13.80320 -13.43385 -13.38889 -13.07969 -13.06257 -12.89118 -12.57883 -12.52618 -11.88914 -11.72777 -11.46403 -11.14306 -10.95083 -10.62646 -10.44448 -10.22268 -9.80529 -9.56015 -9.52703 -9.35272 -8.88294 -8.51667 -7.24649 -6.71117 -4.26707 0.28718 0.70134 1.96598 2.09017 2.67458 2.79284 2.99820 3.00999 3.04025 3.44735 3.55634 3.76718 4.17040 4.33224 4.37362 4.55953 4.59214 4.85135 4.88280 4.98203 5.06499 5.19453 5.28277 5.38895 5.47257 5.52477 5.62589 5.67920 5.92200 6.01132 6.16099 6.33612 6.36498 6.59804 6.77309 6.93608 7.03821 7.07682 7.15708 7.43901 7.51030 7.73154 7.86364 8.73388 9.38589 10.45221 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.025419 B = 0.002583 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.269175 B =10835.670559 C =11914.598944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.730 5.730 3 C 0.565 3.435 4 O -0.523 6.523 5 C -0.204 4.204 6 C -0.038 4.038 7 C -0.057 4.057 8 C -0.168 4.168 9 C -0.053 4.053 10 C -0.191 4.191 11 C 0.162 3.838 12 O -0.162 6.162 13 C -0.393 4.393 14 H 0.097 0.903 15 C 0.042 3.958 16 N -0.852 5.852 17 Si 0.944 3.056 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.267 1.267 21 C -0.233 4.233 22 C -0.046 4.046 23 C 0.147 3.853 24 N -0.507 5.507 25 C 0.333 3.667 26 F -0.095 7.095 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.403 0.597 31 H 0.147 0.853 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.275 0.725 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 8.824 0.321 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.383 5.383 3 C 0.351 3.649 4 O -0.399 6.399 5 C -0.210 4.210 6 C -0.063 4.063 7 C -0.059 4.059 8 C -0.170 4.170 9 C -0.071 4.071 10 C -0.210 4.210 11 C 0.105 3.895 12 O -0.063 6.063 13 C -0.469 4.469 14 H 0.114 0.886 15 C -0.164 4.164 16 N -0.484 5.484 17 Si 0.768 3.232 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.192 1.192 21 C -0.253 4.253 22 C -0.064 4.064 23 C -0.011 4.011 24 N -0.219 5.219 25 C 0.179 3.821 26 F -0.073 7.073 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.238 0.762 31 H 0.164 0.836 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.150 0.850 36 H 0.132 0.868 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.384 9.905 0.322 15.094 hybrid contribution 0.667 -0.929 -0.072 1.146 sum -10.718 8.976 0.250 13.982 Atomic orbital electron populations 1.21577 0.78794 1.02546 1.02589 1.45649 1.08079 1.08420 1.76139 1.17876 0.86320 0.84118 0.76597 1.90843 1.69510 1.30825 1.48726 1.20550 0.94454 0.93793 1.12245 1.21653 0.93563 0.96716 0.94382 1.19749 0.92798 0.94762 0.98574 1.17869 0.92559 0.90264 1.16268 1.20603 0.98180 0.91032 0.97330 1.20138 0.91147 0.98439 1.11283 1.19510 0.91361 0.86765 0.91826 1.83949 1.20113 1.26453 1.75815 1.21410 0.78233 0.95086 1.52141 0.88573 1.25389 1.00947 0.94143 0.95954 1.70025 1.36865 0.97852 1.43686 0.85717 0.79735 0.78256 0.79467 1.19221 1.20064 1.19219 1.21107 1.00861 0.91731 1.11553 1.20784 0.92273 0.97517 0.95869 1.22886 1.00292 0.85325 0.92621 1.67055 1.05920 1.33243 1.15731 1.18033 0.86698 0.80755 0.96623 1.91687 1.77938 1.45187 1.92524 0.90286 0.91965 0.91957 0.76233 0.83601 0.86815 0.85992 0.91499 0.84975 0.86783 0.80947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.70 59.85 0.64 1.26 16 2 N -0.73 -6.36 5.67 -68.09 -0.39 -6.74 16 3 C 0.56 7.17 7.78 -12.40 -0.10 7.08 16 4 O -0.52 -8.46 15.35 5.30 0.08 -8.38 16 5 C -0.20 -2.59 5.89 -104.80 -0.62 -3.21 16 6 C -0.04 -0.41 9.00 -38.53 -0.35 -0.76 16 7 C -0.06 -0.71 5.89 -104.81 -0.62 -1.33 16 8 C -0.17 -2.41 5.88 -104.85 -0.62 -3.03 16 9 C -0.05 -0.77 9.43 -39.28 -0.37 -1.14 16 10 C -0.19 -3.41 9.98 -39.44 -0.39 -3.80 16 11 C 0.16 3.41 6.65 -39.02 -0.26 3.15 16 12 O -0.16 -4.17 9.75 0.25 0.00 -4.16 16 13 C -0.39 -9.96 9.48 30.89 0.29 -9.67 16 14 H 0.10 2.21 5.19 -52.49 -0.27 1.94 16 15 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 16 N -0.85 -23.09 13.67 55.48 0.76 -22.33 16 17 Si 0.94 18.79 29.55 -169.99 -5.02 13.76 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 C -0.23 -4.35 9.15 -39.44 -0.36 -4.71 16 22 C -0.05 -0.71 9.43 -39.28 -0.37 -1.08 16 23 C 0.15 1.85 10.59 -17.12 -0.18 1.66 16 24 N -0.51 -7.30 10.34 -12.94 -0.13 -7.43 16 25 C 0.33 4.92 8.41 -16.85 -0.14 4.78 16 26 F -0.09 -1.53 15.57 2.25 0.04 -1.49 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.40 2.43 6.93 -40.82 -0.28 2.15 16 31 H 0.15 1.14 4.76 -52.48 -0.25 0.89 16 32 H 0.11 1.21 6.26 -52.49 -0.33 0.88 16 33 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 34 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.13 2.46 5.62 -52.49 -0.30 2.16 16 36 H 0.11 1.38 6.21 -52.49 -0.33 1.06 16 37 H 0.17 1.77 6.20 -52.49 -0.33 1.45 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -31.34 326.94 -6.18 -37.52 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -2.91 Total: 4.16 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -3.53 Total: -9.83 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.24 Total: -36.50 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.34 -6.18 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.160 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds