Wall clock time and date at job start Fri Apr 10 2020 23:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99961 * 2 1 4 4 O 1.21570 * 120.00080 * 359.97438 * 3 2 1 5 5 C 1.47704 * 119.99971 * 180.02562 * 3 2 1 6 6 C 1.39800 * 120.52088 * 359.97438 * 5 3 2 7 7 C 1.39493 * 118.21289 * 179.77391 * 6 5 3 8 8 C 1.48349 * 120.44027 * 180.24080 * 7 6 5 9 9 C 1.39420 * 120.04757 * 0.02562 * 8 7 6 10 10 C 1.37851 * 119.94529 * 179.74424 * 9 8 7 11 11 C 1.38997 * 120.04959 * 0.52837 * 10 9 8 12 12 O 1.35702 * 119.94911 * 179.74266 * 11 10 9 13 13 C 1.34812 * 116.99801 * 174.42595 * 12 11 10 14 14 H 1.07999 * 120.00538 * 5.06505 * 13 12 11 15 15 C 1.38653 * 119.99937 * 185.05696 * 13 12 11 16 16 N 1.31564 * 119.99528 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00070 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47285 * 59.99765 * 17 15 13 19 19 H 1.48501 * 109.46673 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46968 * 299.99695 * 17 15 13 21 21 C 1.38996 * 120.10592 * 359.72250 * 11 10 9 22 22 C 1.37851 * 120.04691 * 0.02562 * 21 11 10 23 23 C 1.39479 * 119.12305 * 0.50530 * 7 6 5 24 24 N 1.31768 * 120.95680 * 359.48000 * 23 7 6 25 25 C 1.31967 * 121.98193 * 0.24983 * 24 23 7 26 26 F 1.35100 * 119.61698 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.46693 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46862 * 299.99749 * 1 2 3 29 29 H 1.08992 * 109.47449 * 59.99782 * 1 2 3 30 30 H 0.97001 * 120.00252 * 180.02562 * 2 1 3 31 31 H 1.08004 * 120.89169 * 0.02562 * 6 5 3 32 32 H 1.07994 * 120.03342 * 359.97113 * 9 8 7 33 33 H 1.07995 * 119.97912 * 180.22759 * 10 9 8 34 34 H 0.97002 * 119.99199 * 179.97438 * 16 15 13 35 35 H 1.08000 * 119.98123 * 180.02562 * 21 11 10 36 36 H 1.08000 * 120.02549 * 179.97438 * 22 21 11 37 37 H 1.08000 * 119.51686 * 179.75018 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2200 -0.0005 5 6 3.6159 1.1672 -0.0006 6 6 4.3259 -0.0371 -0.0006 7 6 5.7197 0.0190 -0.0060 8 6 6.5222 -1.2287 -0.0116 9 6 5.8848 -2.4686 -0.0121 10 6 6.6325 -3.6267 -0.0227 11 6 8.0208 -3.5588 -0.0217 12 8 8.7549 -4.7002 -0.0269 13 6 10.0915 -4.5676 -0.1424 14 1 10.5387 -3.5846 -0.1431 15 6 10.8922 -5.6935 -0.2600 16 7 10.3474 -6.8910 -0.2594 17 14 12.7443 -5.5099 -0.4193 18 1 13.2777 -4.8140 0.7791 19 1 13.3671 -6.8534 -0.5304 20 1 13.0604 -4.7164 -1.6341 21 6 8.6585 -2.3238 -0.0160 22 6 7.9148 -1.1631 -0.0107 23 6 6.3489 1.2638 -0.0004 24 7 5.6462 2.3785 -0.0004 25 6 4.3266 2.3729 -0.0008 26 9 3.6539 3.5445 -0.0013 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.9501 -0.8400 -0.0004 31 1 3.8091 -0.9855 -0.0006 32 1 4.8062 -2.5219 -0.0079 33 1 6.1393 -4.5875 -0.0267 34 1 10.9076 -7.6786 -0.3421 35 1 9.7373 -2.2734 -0.0157 36 1 8.4107 -0.2036 -0.0058 37 1 7.4277 1.3147 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:34 Heat of formation + Delta-G solvation = -60.452253 kcal Electronic energy + Delta-G solvation = -24447.210357 eV Core-core repulsion = 20490.261398 eV Total energy + Delta-G solvation = -3956.948959 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.101 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -50.11435 -41.75644 -40.75631 -40.14434 -38.22038 -35.85715 -34.52958 -34.05858 -33.09094 -31.85245 -29.32751 -28.10567 -27.37007 -25.84089 -24.67417 -23.31976 -22.63480 -21.64075 -19.93876 -19.61814 -18.89422 -18.73469 -18.35297 -17.35912 -16.91663 -16.71651 -16.18505 -16.16524 -16.08360 -15.81992 -15.56194 -15.19883 -14.92312 -14.55112 -14.50087 -14.34839 -14.16398 -13.89971 -13.81800 -13.52001 -13.11408 -13.07178 -12.77988 -12.61412 -12.37918 -12.14457 -11.51952 -11.31628 -11.22610 -10.87636 -10.75437 -10.40076 -10.15914 -9.83046 -8.66354 -8.48486 -6.14527 -0.76549 -0.33543 0.61178 0.80852 1.38384 1.47092 1.53293 1.66653 1.97340 2.17845 2.40571 2.46571 2.90191 3.16182 3.21846 3.40271 3.45290 3.55104 3.65510 3.96481 4.11146 4.21517 4.36279 4.47917 4.50469 4.58251 4.63597 4.64464 4.86866 4.96663 4.99918 5.14570 5.24210 5.27540 5.32094 5.55646 5.67285 5.69439 6.01502 6.11560 6.32265 6.43092 6.96666 7.02586 7.74595 8.73425 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.025419 B = 0.002583 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.269175 B =10835.670559 C =11914.598944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.711 5.711 3 C 0.560 3.440 4 O -0.566 6.566 5 C -0.205 4.205 6 C -0.010 4.010 7 C -0.067 4.067 8 C -0.136 4.136 9 C -0.043 4.043 10 C -0.200 4.200 11 C 0.124 3.876 12 O -0.223 6.223 13 C -0.413 4.413 14 H 0.107 0.893 15 C -0.019 4.019 16 N -0.916 5.916 17 Si 1.015 2.985 18 H -0.257 1.257 19 H -0.275 1.275 20 H -0.257 1.257 21 C -0.243 4.243 22 C -0.047 4.047 23 C 0.155 3.845 24 N -0.526 5.526 25 C 0.320 3.680 26 F -0.109 7.109 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.419 0.581 31 H 0.185 0.815 32 H 0.164 0.836 33 H 0.123 0.877 34 H 0.273 0.727 35 H 0.124 0.876 36 H 0.150 0.850 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.947 10.583 0.313 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.364 5.364 3 C 0.346 3.654 4 O -0.446 6.446 5 C -0.212 4.212 6 C -0.035 4.035 7 C -0.070 4.070 8 C -0.138 4.138 9 C -0.061 4.061 10 C -0.219 4.219 11 C 0.073 3.927 12 O -0.129 6.129 13 C -0.489 4.489 14 H 0.124 0.876 15 C -0.218 4.218 16 N -0.553 5.553 17 Si 0.834 3.166 18 H -0.181 1.181 19 H -0.200 1.200 20 H -0.181 1.181 21 C -0.262 4.262 22 C -0.065 4.065 23 C -0.002 4.002 24 N -0.239 5.239 25 C 0.166 3.834 26 F -0.088 7.088 27 H 0.135 0.865 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.257 0.743 31 H 0.202 0.798 32 H 0.182 0.818 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.168 0.832 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -13.050 11.695 0.318 17.527 hybrid contribution 0.703 -1.013 -0.051 1.234 sum -12.348 10.682 0.266 16.329 Atomic orbital electron populations 1.21784 0.77496 1.04852 1.01898 1.45592 1.08944 1.07859 1.73956 1.17954 0.86277 0.84619 0.76516 1.90832 1.70141 1.32565 1.51083 1.20589 0.94740 0.93565 1.12328 1.21994 0.92873 0.97557 0.91099 1.19616 0.93301 0.93755 1.00291 1.18123 0.92398 0.91071 1.12186 1.21085 1.00510 0.89489 0.94989 1.20428 0.90163 1.00105 1.11222 1.20153 0.92715 0.86873 0.93002 1.83929 1.20308 1.28599 1.80014 1.21824 0.78943 0.95710 1.52402 0.87594 1.26542 1.05792 0.93667 0.95754 1.70165 1.38487 0.98701 1.47971 0.84691 0.73701 0.78255 0.79941 1.18111 1.19955 1.18148 1.21213 1.00942 0.92157 1.11863 1.21147 0.92865 0.97810 0.94666 1.23289 1.01329 0.84862 0.90706 1.67092 1.05950 1.34129 1.16749 1.18411 0.87192 0.81039 0.96750 1.91652 1.78297 1.46211 1.92667 0.86466 0.92699 0.92704 0.74345 0.79759 0.81824 0.85919 0.91755 0.85818 0.83223 0.78710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.70 127.77 1.37 2.23 16 2 N -0.71 -9.38 5.67 -487.62 -2.76 -12.14 16 3 C 0.56 12.57 7.78 86.75 0.67 13.24 16 4 O -0.57 -17.57 15.35 -3.94 -0.06 -17.63 16 5 C -0.21 -4.48 5.89 -19.98 -0.12 -4.60 16 6 C -0.01 -0.17 9.00 22.95 0.21 0.04 16 7 C -0.07 -1.34 5.89 -19.98 -0.12 -1.46 16 8 C -0.14 -3.27 5.88 -20.01 -0.12 -3.39 16 9 C -0.04 -1.05 9.43 22.46 0.21 -0.84 16 10 C -0.20 -6.88 9.98 22.36 0.22 -6.66 16 11 C 0.12 5.34 6.65 22.63 0.15 5.49 16 12 O -0.22 -12.17 9.75 -22.03 -0.21 -12.38 16 13 C -0.41 -22.09 9.48 67.92 0.64 -21.45 16 14 H 0.11 5.11 5.19 -2.91 -0.02 5.09 16 15 C -0.02 -1.01 5.49 84.83 0.47 -0.55 16 16 N -0.92 -53.04 13.67 21.61 0.30 -52.75 16 17 Si 1.01 39.97 29.55 68.60 2.03 42.00 16 18 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 19 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 20 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 21 C -0.24 -8.91 9.15 22.36 0.20 -8.70 16 22 C -0.05 -1.28 9.43 22.46 0.21 -1.07 16 23 C 0.16 3.24 10.59 85.00 0.90 4.14 16 24 N -0.53 -13.59 10.34 -194.85 -2.02 -15.61 16 25 C 0.32 8.69 8.41 85.09 0.72 9.40 16 26 F -0.11 -3.44 15.57 44.97 0.70 -2.74 16 27 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.42 2.62 6.93 -92.71 -0.64 1.97 16 31 H 0.19 1.50 4.76 -2.91 -0.01 1.49 16 32 H 0.16 2.30 6.26 -2.91 -0.02 2.28 16 33 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.12 4.68 5.62 -2.91 -0.02 4.66 16 36 H 0.15 2.95 6.21 -2.91 -0.02 2.94 16 37 H 0.20 3.06 6.20 -2.91 -0.02 3.04 16 Total: -1.00 -75.91 326.94 4.12 -71.79 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.53 Total: 13.60 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 5.62 Total: -14.16 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -4.48 Total: -80.49 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.28 Total: -30.01 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.70 Total: -2.74 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -75.91 4.12 -71.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.341 kcal (2) G-P(sol) polarization free energy of solvation -75.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds