Wall clock time and date at job start Fri Apr 10 2020 23:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 120.00088 * 2 1 4 4 O 1.21279 * 119.99476 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00305 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47238 * 180.02562 * 5 3 2 7 7 C 1.36935 * 119.99979 * 270.56551 * 6 5 3 8 8 H 1.08000 * 119.99909 * 188.14738 * 7 6 5 9 9 C 1.38818 * 120.00176 * 8.14223 * 7 6 5 10 10 N 1.31620 * 119.99414 * 24.61438 * 9 7 6 11 11 Si 1.86794 * 120.00245 * 204.61454 * 9 7 6 12 12 H 1.48502 * 109.47283 * 59.99691 * 11 9 7 13 13 H 1.48504 * 109.47137 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46824 * 299.99964 * 11 9 7 15 15 C 1.46497 * 119.99963 * 90.55873 * 6 5 3 16 16 C 1.50690 * 109.47470 * 270.00350 * 15 6 5 17 17 C 1.38265 * 119.99825 * 270.21238 * 16 15 6 18 18 C 1.38214 * 119.99677 * 180.25575 * 17 16 15 19 19 C 1.38261 * 120.00359 * 359.50884 * 18 17 16 20 20 C 1.38210 * 119.99432 * 0.27992 * 19 18 17 21 21 C 1.50703 * 119.99739 * 179.97438 * 20 19 18 22 22 F 1.39905 * 109.47302 * 359.97438 * 21 20 19 23 23 F 1.39894 * 109.47399 * 120.00079 * 21 20 19 24 24 F 1.39896 * 109.47163 * 240.00321 * 21 20 19 25 25 C 1.38215 * 120.00615 * 90.00244 * 16 15 6 26 26 H 1.09002 * 109.47090 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47814 * 300.00237 * 1 2 3 28 28 H 1.09004 * 109.47162 * 60.00314 * 1 2 3 29 29 H 0.96995 * 120.00252 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46790 * 59.99835 * 5 3 2 31 31 H 1.08998 * 109.47159 * 300.00347 * 5 3 2 32 32 H 0.97006 * 119.99403 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.46891 * 149.99987 * 15 6 5 34 34 H 1.09005 * 109.47257 * 30.00593 * 15 6 5 35 35 H 1.07989 * 120.00137 * 0.04160 * 17 16 15 36 36 H 1.08003 * 120.00105 * 179.79198 * 18 17 16 37 37 H 1.08001 * 119.99953 * 180.26160 * 19 18 17 38 38 H 1.08004 * 119.99136 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1673 0.0006 6 7 4.1342 2.5485 0.0011 7 6 4.3518 3.1982 -1.1845 8 1 4.8340 4.1646 -1.1901 9 6 3.9528 2.6147 -2.3792 10 7 2.9780 1.7303 -2.3862 11 14 4.7991 3.0847 -3.9768 12 1 6.2454 2.7606 -3.8847 13 1 4.1919 2.3267 -5.1002 14 1 4.6323 4.5409 -4.2154 15 6 4.3895 3.2347 1.2700 16 6 3.1376 3.9435 1.7186 17 6 2.9015 5.2470 1.3225 18 6 1.7559 5.8988 1.7383 19 6 0.8410 5.2441 2.5420 20 6 1.0750 3.9396 2.9344 21 6 0.0781 3.2261 3.8109 22 9 -0.9916 4.0825 4.0932 23 9 -0.3964 2.0894 3.1478 24 9 0.6971 2.8445 5.0060 25 6 2.2233 3.2892 2.5225 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 4.0095 0.6533 -0.8891 31 1 4.0089 0.6536 0.8908 32 1 2.6994 1.3222 -3.2210 33 1 5.1903 3.9619 1.1351 34 1 4.6844 2.5054 2.0246 35 1 3.6139 5.7569 0.6911 36 1 1.5730 6.9181 1.4317 37 1 -0.0562 5.7521 2.8635 38 1 2.4059 2.2697 2.8288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265324628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:33 Heat of formation + Delta-G solvation = -142.725839 kcal Electronic energy + Delta-G solvation = -28113.483460 eV Core-core repulsion = 23734.570416 eV Total energy + Delta-G solvation = -4378.913044 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.17181 -48.69317 -48.62764 -40.44360 -39.61439 -37.07064 -34.79484 -33.93395 -32.68816 -31.84413 -29.51534 -27.35835 -26.99154 -26.55241 -23.80156 -23.13552 -21.89992 -20.95510 -19.49446 -19.36656 -19.02102 -18.74984 -17.53693 -17.13805 -16.97180 -16.25533 -16.07180 -15.74400 -15.54773 -15.38481 -15.32981 -15.13921 -15.09100 -14.86873 -14.80662 -14.74408 -14.33125 -13.78176 -13.61611 -13.45549 -13.44478 -13.29177 -12.90687 -12.69504 -12.55964 -12.30522 -12.17428 -11.90812 -11.87145 -11.75093 -10.62456 -10.08038 -9.95152 -9.65839 -9.45787 -8.82347 -7.82680 -5.07735 0.19648 0.53163 1.50824 1.53517 1.58855 1.68700 2.51595 2.64376 2.72553 2.79166 2.99478 3.07146 3.35755 3.47206 3.83341 3.98697 4.04582 4.21305 4.45369 4.48327 4.56542 4.63673 4.67877 4.78764 4.89205 4.99160 5.02238 5.14394 5.18432 5.33964 5.34946 5.49996 5.72053 5.78879 6.05278 6.09069 6.28948 7.08519 7.27971 7.86746 8.21258 8.30359 9.23308 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.005581 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.548408 B = 5016.042453 C = 5916.654026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.749 5.749 3 C 0.522 3.478 4 O -0.557 6.557 5 C 0.159 3.841 6 N -0.574 5.574 7 C -0.247 4.247 8 H 0.078 0.922 9 C -0.047 4.047 10 N -0.911 5.911 11 Si 0.959 3.041 12 H -0.277 1.277 13 H -0.304 1.304 14 H -0.289 1.289 15 C 0.174 3.826 16 C -0.083 4.083 17 C -0.085 4.085 18 C -0.125 4.125 19 C -0.096 4.096 20 C -0.196 4.196 21 C 0.514 3.486 22 F -0.178 7.178 23 F -0.185 7.185 24 F -0.179 7.179 25 C -0.051 4.051 26 H 0.098 0.902 27 H 0.034 0.966 28 H 0.018 0.982 29 H 0.401 0.599 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.242 0.758 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 -0.329 11.292 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.404 5.404 3 C 0.308 3.692 4 O -0.433 6.433 5 C 0.029 3.971 6 N -0.291 5.291 7 C -0.376 4.376 8 H 0.096 0.904 9 C -0.242 4.242 10 N -0.557 5.557 11 Si 0.789 3.211 12 H -0.203 1.203 13 H -0.231 1.231 14 H -0.216 1.216 15 C 0.049 3.951 16 C -0.087 4.087 17 C -0.104 4.104 18 C -0.143 4.143 19 C -0.114 4.114 20 C -0.198 4.198 21 C 0.460 3.540 22 F -0.159 7.159 23 F -0.166 7.166 24 F -0.160 7.160 25 C -0.070 4.070 26 H 0.116 0.884 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.235 0.765 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.143 0.857 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.179 0.349 11.159 11.375 hybrid contribution -0.277 -0.406 -1.312 1.401 sum -2.456 -0.057 9.847 10.149 Atomic orbital electron populations 1.21192 0.81508 1.02023 0.99144 1.45871 1.06698 1.09132 1.78745 1.21938 0.91966 0.82829 0.72457 1.90523 1.70664 1.32715 1.49436 1.20778 0.89208 0.86681 1.00468 1.44360 1.73668 1.09773 1.01344 1.19419 1.30800 1.03418 0.84011 0.90421 1.25294 0.98002 1.00898 0.99998 1.70081 1.26569 1.33722 1.25361 0.85471 0.78757 0.76811 0.80066 1.20318 1.23103 1.21576 1.20221 0.92062 0.95529 0.87305 1.20976 0.99679 0.94152 0.93860 1.21339 0.97684 0.94615 0.96748 1.21304 0.93860 1.01198 0.97960 1.21005 1.00049 0.92727 0.97615 1.19914 0.97088 0.97424 1.05357 1.18310 0.80223 0.76870 0.78636 1.93126 1.58506 1.70248 1.94048 1.93196 1.89424 1.53199 1.80802 1.93177 1.82605 1.91764 1.48495 1.20447 0.92467 0.98143 0.95984 0.88392 0.94743 0.96273 0.76533 0.89877 0.91442 0.94833 0.90840 0.90800 0.85685 0.83203 0.83703 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.60 10.70 127.77 1.37 4.97 16 2 N -0.75 -27.45 5.71 -484.53 -2.77 -30.22 16 3 C 0.52 23.34 5.66 87.66 0.50 23.83 16 4 O -0.56 -29.37 13.49 -3.03 -0.04 -29.41 16 5 C 0.16 6.77 5.48 85.63 0.47 7.24 16 6 N -0.57 -25.75 2.06 -710.70 -1.47 -27.22 16 7 C -0.25 -12.45 9.71 84.04 0.82 -11.64 16 8 H 0.08 3.83 7.93 -2.91 -0.02 3.81 16 9 C -0.05 -2.44 4.91 84.86 0.42 -2.02 16 10 N -0.91 -49.89 8.90 21.65 0.19 -49.70 16 11 Si 0.96 43.55 29.62 68.60 2.03 45.58 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 14 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 15 C 0.17 6.42 5.83 85.63 0.50 6.92 16 16 C -0.08 -3.13 4.50 -19.87 -0.09 -3.22 16 17 C -0.08 -3.03 9.70 22.27 0.22 -2.81 16 18 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 19 C -0.10 -3.04 9.43 22.27 0.21 -2.83 16 20 C -0.20 -6.82 5.37 -19.87 -0.11 -6.93 16 21 C 0.51 16.52 3.32 71.24 0.24 16.75 16 22 F -0.18 -5.30 15.97 44.97 0.72 -4.58 16 23 F -0.18 -6.51 17.24 44.97 0.78 -5.73 16 24 F -0.18 -5.41 17.24 44.97 0.78 -4.63 16 25 C -0.05 -1.88 7.48 22.27 0.17 -1.72 16 26 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.40 11.89 8.83 -92.71 -0.82 11.07 16 30 H 0.08 3.90 6.30 -2.39 -0.02 3.89 16 31 H 0.07 2.38 7.89 -2.39 -0.02 2.36 16 32 H 0.24 13.40 8.31 -92.70 -0.77 12.63 16 33 H 0.07 2.51 7.97 -2.38 -0.02 2.49 16 34 H 0.07 2.34 7.83 -2.38 -0.02 2.32 16 35 H 0.13 4.26 8.06 -2.92 -0.02 4.24 16 36 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 37 H 0.15 3.87 7.16 -2.91 -0.02 3.85 16 38 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -65.26 334.52 5.43 -59.84 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.29 Total: 21.26 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 4.92 Total: 24.82 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -4.04 Total: -107.14 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.04 Total: -29.41 kcal Atomic # 9 Polarization: -17.21 SS G_CDS: 2.27 Total: -14.95 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.26 5.43 -59.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265324628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.888 kcal (2) G-P(sol) polarization free energy of solvation -65.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds