Wall clock time and date at job start Fri Apr 10 2020 23:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47381 * 2 1 4 4 C 1.46507 * 120.00026 * 274.96519 * 3 2 1 5 5 C 1.50701 * 109.47195 * 270.00007 * 4 3 2 6 6 H 1.08002 * 119.99838 * 0.02562 * 5 4 3 7 7 C 1.37866 * 120.00114 * 180.02562 * 5 4 3 8 8 N 1.31522 * 120.00221 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00378 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47136 * 89.99605 * 9 7 5 11 11 H 1.48495 * 109.47369 * 210.00039 * 9 7 5 12 12 H 1.48502 * 109.46973 * 330.00491 * 9 7 5 13 13 C 1.34772 * 120.00034 * 94.96785 * 3 2 1 14 14 O 1.21632 * 119.99937 * 185.55020 * 13 3 2 15 15 C 1.47260 * 119.99870 * 5.54565 * 13 3 2 16 16 C 1.40285 * 120.46764 * 55.01447 * 15 13 3 17 17 C 1.36853 * 118.59298 * 180.02562 * 16 15 13 18 18 C 1.39858 * 119.48101 * 0.02562 * 17 16 15 19 19 C 1.47401 * 119.53949 * 180.02562 * 18 17 16 20 20 C 1.36203 * 125.95277 * 179.71748 * 19 18 17 21 21 C 1.40692 * 106.72558 * 180.25912 * 20 19 18 22 22 C 1.34902 * 107.06888 * 359.97438 * 21 20 19 23 23 O 1.34163 * 108.70456 * 0.02562 * 22 21 20 24 24 N 1.33030 * 120.91713 * 0.26985 * 18 17 16 25 25 C 1.32042 * 121.52113 * 359.43930 * 24 18 17 26 26 O 1.35425 * 119.79104 * 180.25868 * 25 24 18 27 27 H 1.08995 * 109.47472 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46785 * 300.00500 * 1 2 3 29 29 H 1.08998 * 109.46582 * 59.99994 * 1 2 3 30 30 H 1.09008 * 109.47157 * 240.00117 * 2 1 3 31 31 H 1.09001 * 109.47038 * 120.00214 * 2 1 3 32 32 H 1.09000 * 109.47072 * 30.00266 * 4 3 2 33 33 H 1.08993 * 109.47061 * 149.99979 * 4 3 2 34 34 H 0.96991 * 120.00229 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.70323 * 0.02562 * 16 15 13 36 36 H 1.07998 * 120.26093 * 180.02562 * 17 16 15 37 37 H 1.07999 * 126.63471 * 0.22194 * 20 19 18 38 38 H 1.08008 * 126.46486 * 180.02562 * 21 20 19 39 39 H 1.07992 * 125.64894 * 179.97438 * 22 21 20 40 40 H 0.96706 * 114.00497 * 270.29647 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1591 2.1084 -1.2640 5 6 3.5418 1.8859 -1.8204 6 1 4.2453 1.2645 -1.2861 7 6 3.9088 2.4755 -3.0114 8 7 3.0523 3.2326 -3.6618 9 14 5.6230 2.2003 -3.7008 10 1 5.6163 1.0044 -4.5813 11 1 6.0379 3.3906 -4.4856 12 1 6.5775 1.9867 -2.5833 13 6 2.3383 1.9828 1.1628 14 8 2.6469 3.1593 1.1740 15 6 2.3142 1.2158 2.4196 16 6 3.0558 0.0316 2.5446 17 6 3.0051 -0.6510 3.7297 18 6 2.2216 -0.1550 4.7767 19 6 2.1665 -0.8888 6.0538 20 6 1.4542 -0.5236 7.1558 21 6 1.6961 -1.5026 8.1370 22 6 2.5345 -2.4091 7.5937 23 8 2.8163 -2.0351 6.3364 24 7 1.5216 0.9672 4.6342 25 6 1.5472 1.6588 3.5097 26 8 0.8249 2.7996 3.4047 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.4180 1.7456 -1.9763 33 1 2.0046 3.1732 -1.0897 34 1 3.3103 3.6470 -4.4998 35 1 3.6541 -0.3337 1.7230 36 1 3.5657 -1.5654 3.8555 37 1 0.8259 0.3489 7.2571 38 1 1.2870 -1.5246 9.1363 39 1 2.9163 -3.2895 8.0890 40 1 -0.0753 2.6665 3.0775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267369298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:51 Heat of formation + Delta-G solvation = -11.164233 kcal Electronic energy + Delta-G solvation = -25859.490581 eV Core-core repulsion = 22028.139216 eV Total energy + Delta-G solvation = -3831.351365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.82106 -40.78225 -38.62682 -37.21552 -35.34807 -33.62007 -33.03715 -32.48799 -31.50830 -30.16846 -29.02981 -27.10424 -24.79917 -23.82545 -23.00825 -22.59236 -21.65756 -21.08342 -19.30602 -18.81575 -17.82858 -16.96484 -16.67520 -16.40209 -16.37388 -16.04139 -15.56149 -14.88194 -14.59049 -14.30581 -13.91278 -13.58423 -13.37756 -13.19264 -13.14420 -12.98571 -12.85451 -12.60715 -12.20465 -12.07745 -11.77568 -11.74723 -11.27324 -10.97622 -10.85936 -10.64632 -10.27118 -10.18997 -9.98070 -9.87531 -9.69205 -9.58440 -9.03468 -8.47960 -8.23458 -7.74831 -6.08863 -4.14343 0.22602 1.00226 1.64371 2.33610 2.37325 3.21411 3.27232 3.34676 3.38459 3.45236 3.74259 3.78524 4.17169 4.40174 4.58225 4.70183 4.75396 4.78758 4.92373 5.11480 5.25883 5.26817 5.31983 5.43115 5.55678 5.59929 5.68849 5.72563 5.83471 5.91008 5.98185 6.16344 6.19281 6.22622 6.40500 6.75660 6.98391 7.37871 7.41146 7.46454 7.64992 7.86963 8.16943 8.28345 8.80800 8.96494 9.51028 10.99204 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.021603 B = 0.003148 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.791542 B = 8893.530677 C = 9293.869185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.589 5.589 4 C 0.246 3.754 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.553 3.447 14 O -0.516 6.516 15 C -0.170 4.170 16 C -0.029 4.029 17 C -0.166 4.166 18 C 0.230 3.770 19 C 0.015 3.985 20 C -0.148 4.148 21 C -0.220 4.220 22 C -0.024 4.024 23 O -0.167 6.167 24 N -0.490 5.490 25 C 0.359 3.641 26 O -0.461 6.461 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.208 0.792 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.335 -14.047 18.662 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.027 4.027 3 N -0.320 5.320 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.337 3.663 14 O -0.391 6.391 15 C -0.177 4.177 16 C -0.055 4.055 17 C -0.186 4.186 18 C 0.093 3.907 19 C -0.035 4.035 20 C -0.169 4.169 21 C -0.239 4.239 22 C -0.093 4.093 23 O -0.062 6.062 24 N -0.210 5.210 25 C 0.179 3.821 26 O -0.267 6.267 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.171 0.829 39 H 0.225 0.775 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.037 -12.788 19.079 23.514 hybrid contribution 0.882 -0.591 -1.053 1.496 sum -4.155 -13.379 18.026 22.830 Atomic orbital electron populations 1.22164 0.96604 1.01459 1.02187 1.21635 0.93918 0.84278 1.02865 1.48221 1.62630 1.13460 1.07718 1.19332 0.96939 0.93222 0.77767 1.21413 0.98520 1.30824 1.06135 0.92432 1.24929 0.97550 0.94808 0.96714 1.69927 1.35055 1.31827 1.16352 0.86493 0.84268 0.77683 0.78967 1.20611 1.21038 1.19861 1.17653 0.79272 0.86727 0.82652 1.90829 1.47183 1.15128 1.86003 1.21497 1.02456 0.96920 0.96816 1.21403 0.94977 0.91352 0.97726 1.21734 1.01102 1.02506 0.93256 1.17909 0.93269 0.89761 0.89756 1.19681 1.00391 0.88426 0.94984 1.21973 1.01774 1.01288 0.91842 1.21866 1.03633 0.96680 1.01714 1.24247 1.01110 1.01494 0.82419 1.84013 1.57205 1.34690 1.30253 1.66899 1.22600 1.06056 1.25465 1.18754 0.92059 0.85050 0.86247 1.84828 1.29555 1.24592 1.87728 0.92105 0.93523 0.91757 0.89760 0.91331 0.94722 0.93554 0.92628 0.82968 0.83499 0.82423 0.82944 0.77522 0.74058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.10 1.50 5.97 -4.04 -0.02 1.48 16 3 N -0.59 -12.06 2.46 -176.38 -0.43 -12.50 16 4 C 0.25 6.26 5.23 -5.19 -0.03 6.23 16 5 C -0.53 -14.64 9.39 -34.44 -0.32 -14.97 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.55 11.65 6.79 -12.60 -0.09 11.56 16 14 O -0.52 -13.36 16.36 3.20 0.05 -13.31 16 15 C -0.17 -2.86 4.92 -104.63 -0.51 -3.37 16 16 C -0.03 -0.40 7.55 -39.31 -0.30 -0.70 16 17 C -0.17 -2.00 9.68 -39.48 -0.38 -2.38 16 18 C 0.23 3.08 6.74 -83.01 -0.56 2.52 16 19 C 0.02 0.18 7.03 -36.58 -0.26 -0.07 16 20 C -0.15 -1.60 10.58 -39.39 -0.42 -2.02 16 21 C -0.22 -1.81 10.88 -39.84 -0.43 -2.24 16 22 C -0.02 -0.18 12.08 29.55 0.36 0.18 16 23 O -0.17 -1.72 10.36 4.81 0.05 -1.67 16 24 N -0.49 -7.32 10.05 -9.61 -0.10 -7.41 16 25 C 0.36 5.78 7.76 -16.63 -0.13 5.65 16 26 O -0.46 -7.26 12.79 -20.02 -0.26 -7.51 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.33 8.11 -51.92 -0.42 0.91 16 31 H 0.07 0.91 4.42 -51.93 -0.23 0.68 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.15 1.90 7.61 -52.48 -0.40 1.50 16 36 H 0.15 1.38 7.87 -52.49 -0.41 0.97 16 37 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.40 4.26 9.06 45.56 0.41 4.67 16 LS Contribution 353.64 15.07 5.33 5.33 Total: -1.00 -35.44 353.64 -6.38 -41.82 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -3.93 Total: 2.48 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.81 Total: 1.70 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.21 Total: -45.32 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.15 Total: -22.50 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.44 -6.38 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267369298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.657 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds