Wall clock time and date at job start Fri Apr 10 2020 23:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35808 * 117.00259 * 2 1 4 4 C 1.38934 * 119.90617 * 179.97438 * 3 2 1 5 5 C 1.37757 * 120.10658 * 179.97438 * 4 3 2 6 6 C 1.39777 * 119.89560 * 0.02562 * 5 4 3 7 7 C 1.47464 * 120.09895 * 179.97438 * 6 5 4 8 8 O 1.34780 * 126.77203 * 309.63284 * 7 6 5 9 9 C 1.34086 * 108.24312 * 180.26351 * 8 7 6 10 10 N 1.29896 * 109.80358 * 359.73166 * 9 8 7 11 11 C 1.35942 * 108.74778 * 359.97438 * 10 9 8 12 12 C 1.47021 * 126.62767 * 180.02562 * 11 10 9 13 13 O 1.21666 * 120.00456 * 174.94572 * 12 11 10 14 14 N 1.34780 * 120.00049 * 354.94434 * 12 11 10 15 15 C 1.46503 * 119.99780 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47021 * 324.99687 * 15 14 12 17 17 C 1.52991 * 109.47245 * 85.00430 * 15 14 12 18 18 C 1.50708 * 109.46769 * 205.00495 * 15 14 12 19 19 H 1.07993 * 119.99862 * 359.97438 * 18 15 14 20 20 C 1.37873 * 119.99722 * 180.02562 * 18 15 14 21 21 N 1.31515 * 119.99566 * 179.97438 * 20 18 15 22 22 Si 1.86800 * 120.00391 * 359.97438 * 20 18 15 23 23 H 1.48491 * 109.47339 * 90.00185 * 22 20 18 24 24 H 1.48504 * 109.47118 * 210.00807 * 22 20 18 25 25 H 1.48505 * 109.46767 * 330.00394 * 22 20 18 26 26 C 1.39769 * 119.80222 * 0.27682 * 6 5 4 27 27 C 1.37762 * 119.89668 * 359.43928 * 26 6 5 28 28 H 1.09002 * 109.46924 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46848 * 300.00620 * 1 2 3 30 30 H 1.09002 * 109.46470 * 60.00108 * 1 2 3 31 31 H 1.08007 * 119.94594 * 359.95278 * 4 3 2 32 32 H 1.07991 * 120.05316 * 180.02562 * 5 4 3 33 33 H 1.07999 * 125.09777 * 179.70421 * 9 8 7 34 34 H 0.96996 * 119.99908 * 0.02562 * 14 12 11 35 35 H 1.08997 * 109.47717 * 59.99683 * 17 15 14 36 36 H 1.09008 * 109.46822 * 299.99565 * 17 15 14 37 37 H 1.09006 * 109.47201 * 179.97438 * 17 15 14 38 38 H 0.97005 * 119.99444 * 179.97438 * 21 20 18 39 39 H 1.07998 * 120.05468 * 179.72919 * 26 6 5 40 40 H 1.08004 * 119.94965 * 180.27769 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 3.4332 1.2804 0.0005 5 6 4.0629 2.5056 0.0000 6 6 3.3037 3.6792 -0.0005 7 6 3.9731 4.9931 -0.0005 8 8 4.9527 5.3995 0.8312 9 6 5.2838 6.6577 0.5067 10 7 4.5606 7.0586 -0.4951 11 6 3.7219 6.0525 -0.8588 12 6 2.7345 6.0841 -1.9476 13 8 2.1070 5.0805 -2.2293 14 7 2.5243 7.2249 -2.6339 15 6 1.5399 7.2565 -3.7185 16 1 1.5400 6.2978 -4.2371 17 6 0.1496 7.5223 -3.1379 18 6 1.8970 8.3527 -4.6891 19 1 2.7696 8.9648 -4.5152 20 6 1.1091 8.5747 -5.7985 21 7 1.4205 9.5316 -6.6452 22 14 -0.4006 7.5164 -6.0990 23 1 -1.5795 8.1386 -5.4449 24 1 -0.6453 7.4065 -7.5596 25 1 -0.1768 6.1624 -5.5314 26 6 1.9080 3.6036 0.0053 27 6 1.2869 2.3740 -0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 4.0190 0.3730 0.0017 32 1 5.1415 2.5593 0.0000 33 1 6.0383 7.2492 1.0040 34 1 3.0247 8.0250 -2.4096 35 1 0.1496 8.4809 -2.6192 36 1 -0.1086 6.7293 -2.4358 37 1 -0.5827 7.5462 -3.9449 38 1 0.8663 9.6876 -7.4260 39 1 1.3174 4.5078 0.0094 40 1 0.2085 2.3146 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289916710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:54 Heat of formation + Delta-G solvation = -41.668031 kcal Electronic energy + Delta-G solvation = -25813.368803 eV Core-core repulsion = 21980.694695 eV Total energy + Delta-G solvation = -3832.674108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.31849 -41.09703 -40.49884 -38.50127 -36.87060 -35.91271 -34.38139 -32.98520 -32.19615 -31.80731 -29.72154 -28.08715 -27.25903 -25.68044 -24.10758 -23.79166 -22.90812 -21.98147 -21.30628 -19.83777 -19.21779 -18.48507 -17.88591 -17.71069 -17.40262 -17.00417 -16.69309 -16.64677 -15.93310 -15.84505 -15.48930 -15.20920 -14.96387 -14.75679 -14.66446 -14.41972 -14.13854 -13.72877 -13.66156 -13.34144 -13.26628 -12.85662 -12.79838 -12.44198 -12.20432 -12.15539 -11.94975 -11.77818 -11.63769 -11.31636 -11.07413 -10.88101 -10.29583 -10.08199 -9.89779 -9.03429 -8.39015 -6.46091 -0.42603 0.31760 0.48879 1.09580 1.27083 1.34979 1.45078 1.49887 2.25514 2.27190 2.28461 2.31631 2.65856 2.96643 3.16147 3.51495 3.73124 3.80720 3.85259 4.15615 4.28666 4.32598 4.37844 4.40173 4.43607 4.50774 4.54685 4.62422 4.66349 4.73200 4.93303 4.95391 5.11710 5.17735 5.25627 5.29380 5.38548 5.39364 5.56677 5.58658 6.08799 6.32015 6.42106 6.54739 6.81018 7.13781 7.30143 8.76691 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.004126 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.360901 B = 6784.463317 C = 8683.822220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.142 3.858 4 C -0.161 4.161 5 C -0.046 4.046 6 C -0.088 4.088 7 C 0.085 3.915 8 O -0.188 6.188 9 C 0.203 3.797 10 N -0.495 5.495 11 C -0.080 4.080 12 C 0.584 3.416 13 O -0.564 6.564 14 N -0.686 5.686 15 C 0.244 3.756 16 H 0.029 0.971 17 C -0.153 4.153 18 C -0.538 4.538 19 H 0.050 0.950 20 C 0.029 3.971 21 N -0.934 5.934 22 Si 0.943 3.057 23 H -0.256 1.256 24 H -0.290 1.290 25 H -0.259 1.259 26 C -0.018 4.018 27 C -0.215 4.215 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.312 0.688 34 H 0.407 0.593 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.271 0.729 39 H 0.115 0.885 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.034 -16.161 20.109 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.095 3.905 4 C -0.180 4.180 5 C -0.064 4.064 6 C -0.089 4.089 7 C 0.028 3.972 8 O -0.075 6.075 9 C -0.024 4.024 10 N -0.222 5.222 11 C -0.200 4.200 12 C 0.370 3.630 13 O -0.444 6.444 14 N -0.333 5.333 15 C 0.139 3.861 16 H 0.046 0.954 17 C -0.211 4.211 18 C -0.576 4.576 19 H 0.068 0.932 20 C -0.171 4.171 21 N -0.573 5.573 22 Si 0.769 3.231 23 H -0.182 1.182 24 H -0.218 1.218 25 H -0.184 1.184 26 C -0.037 4.037 27 C -0.233 4.233 28 H 0.143 0.857 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.176 0.824 32 H 0.171 0.829 33 H 0.326 0.674 34 H 0.242 0.758 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.647 -16.342 19.444 25.537 hybrid contribution -0.574 0.315 -0.390 0.761 sum 2.073 -16.027 19.054 24.985 Atomic orbital electron populations 1.23399 0.76346 1.05863 1.02277 1.86031 1.23535 1.26274 1.87930 1.19389 0.92842 0.84434 0.93785 1.20539 0.91393 0.98962 1.07077 1.21220 1.00688 0.89821 0.94719 1.17500 0.92740 0.87554 1.11068 1.21731 0.90072 0.95043 0.90347 1.84512 1.43128 1.31210 1.48624 1.29276 0.99655 0.80163 0.93330 1.70667 1.07749 1.29567 1.14253 1.21867 1.03417 0.92600 1.02105 1.17043 0.81403 0.83528 0.80976 1.90769 1.50714 1.34269 1.68694 1.45921 1.41002 1.12384 1.34040 1.18844 0.85932 0.96430 0.84848 0.95356 1.22328 0.97406 1.01337 1.00054 1.21236 1.12216 1.16669 1.07519 0.93160 1.25597 1.00551 0.95911 0.95015 1.69990 1.40746 1.32591 1.13933 0.85948 0.80241 0.80364 0.76536 1.18189 1.21767 1.18367 1.20842 0.92566 0.97862 0.92381 1.21269 1.01302 0.91310 1.09442 0.85711 0.91295 0.92406 0.82383 0.82884 0.67369 0.75837 0.91968 0.93095 0.93629 0.91944 0.86680 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -6.60 10.49 -91.40 -0.96 -7.56 16 3 C 0.14 3.28 6.69 22.61 0.15 3.43 16 4 C -0.16 -3.46 9.97 22.32 0.22 -3.24 16 5 C -0.05 -1.07 9.78 22.53 0.22 -0.85 16 6 C -0.09 -2.49 5.27 -20.10 -0.11 -2.59 16 7 C 0.09 2.50 6.84 24.80 0.17 2.67 16 8 O -0.19 -4.21 10.75 -5.13 -0.06 -4.27 16 9 C 0.20 3.85 13.16 130.53 1.72 5.56 16 10 N -0.49 -14.62 11.04 -303.73 -3.35 -17.98 16 11 C -0.08 -2.78 7.04 40.91 0.29 -2.50 16 12 C 0.58 24.48 7.71 86.55 0.67 25.15 16 13 O -0.56 -25.52 13.49 -4.24 -0.06 -25.58 16 14 N -0.69 -30.44 5.07 -449.73 -2.28 -32.72 16 15 C 0.24 12.14 2.15 44.24 0.10 12.23 16 16 H 0.03 1.54 6.63 -2.39 -0.02 1.53 16 17 C -0.15 -6.82 8.96 71.98 0.65 -6.18 16 18 C -0.54 -30.75 9.31 25.60 0.24 -30.51 16 19 H 0.05 3.11 7.98 -2.91 -0.02 3.08 16 20 C 0.03 1.68 5.45 84.65 0.46 2.14 16 21 N -0.93 -57.20 13.96 21.45 0.30 -56.90 16 22 Si 0.94 45.10 24.37 68.60 1.67 46.77 16 23 H -0.26 -11.41 6.87 99.48 0.68 -10.73 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.26 -12.22 6.53 99.48 0.65 -11.57 16 26 C -0.02 -0.52 7.72 22.53 0.17 -0.35 16 27 C -0.21 -5.28 9.02 22.33 0.20 -5.08 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 30 H 0.06 0.80 7.65 -2.39 -0.02 0.78 16 31 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.15 2.75 8.06 -2.92 -0.02 2.72 16 33 H 0.31 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.41 17.35 8.28 -92.71 -0.77 16.58 16 35 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.05 2.04 3.27 -2.38 -0.01 2.03 16 38 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 39 H 0.12 3.57 7.60 -2.91 -0.02 3.55 16 40 H 0.15 3.00 6.27 -2.91 -0.02 2.99 16 Total: -1.00 -75.61 340.79 1.77 -73.83 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.25 Total: 23.19 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.26 Total: 1.21 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -5.33 Total: -107.59 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.07 Total: -37.41 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.67 Total: 46.77 kcal Total: -75.61 1.77 -73.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289916710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.163 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds