Wall clock time and date at job start Fri Apr 10 2020 23:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35658 * 117.00359 * 2 1 4 4 C 1.39079 * 119.88569 * 359.72298 * 3 2 1 5 5 C 1.36585 * 120.24252 * 179.75807 * 4 3 2 6 6 C 1.40037 * 120.01088 * 0.51702 * 5 4 3 7 7 C 1.46860 * 120.11584 * 179.76068 * 6 5 4 8 8 C 1.50696 * 119.99723 * 174.55959 * 7 6 5 9 9 O 1.21297 * 119.99887 * 354.55887 * 7 6 5 10 10 C 1.40040 * 119.77039 * 359.74559 * 6 5 4 11 11 C 1.37654 * 119.75594 * 359.97438 * 10 6 5 12 12 C 1.50699 * 120.00416 * 179.97438 * 11 10 6 13 13 C 1.50705 * 109.47434 * 265.02560 * 12 11 10 14 14 O 1.21297 * 119.99369 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00567 * 179.97438 * 13 12 11 16 16 C 1.37092 * 120.00355 * 179.97438 * 15 13 12 17 17 H 1.08005 * 120.00119 * 16.31708 * 16 15 13 18 18 C 1.38949 * 120.00553 * 196.31835 * 16 15 13 19 19 N 1.31413 * 120.00004 * 20.01133 * 18 16 15 20 20 Si 1.86800 * 120.00376 * 200.01797 * 18 16 15 21 21 H 1.48510 * 109.46964 * 59.99634 * 20 18 16 22 22 H 1.48497 * 109.47375 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47082 * 299.99769 * 20 18 16 24 24 C 1.46498 * 119.99666 * 0.02562 * 15 13 12 25 25 C 1.47207 * 109.47169 * 84.50219 * 24 15 13 26 26 N 4.71125 * 122.24532 * 173.18997 * 2 1 3 27 27 H 1.08999 * 109.47354 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47039 * 300.00134 * 1 2 3 29 29 H 1.09008 * 109.47175 * 59.99541 * 1 2 3 30 30 H 1.07998 * 119.87538 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.98950 * 180.25992 * 5 4 3 32 32 H 1.08999 * 109.47331 * 5.09985 * 8 7 6 33 33 H 1.09000 * 109.46952 * 125.10004 * 8 7 6 34 34 H 1.09006 * 109.47086 * 245.09316 * 8 7 6 35 35 H 1.08001 * 120.12395 * 180.02562 * 10 6 5 36 36 H 1.08998 * 109.47243 * 25.02079 * 12 11 10 37 37 H 1.08995 * 109.47450 * 145.02259 * 12 11 10 38 38 H 0.96993 * 120.00342 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.47320 * 204.49822 * 24 15 13 40 40 H 1.08994 * 109.47490 * 324.50279 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2852 2.3736 -0.0058 5 6 1.8977 3.5944 -0.0009 6 6 3.2957 3.6766 -0.0009 7 6 3.9567 4.9880 -0.0009 8 6 5.4560 5.0760 0.1229 9 8 3.2959 6.0003 -0.1005 10 6 4.0612 2.5040 -0.0005 11 6 3.4339 1.2786 0.0003 12 6 4.2522 0.0132 0.0001 13 6 4.4205 -0.4761 -1.4153 14 8 3.9251 0.1424 -2.3336 15 7 5.1223 -1.6001 -1.6609 16 6 5.2750 -2.0455 -2.9485 17 1 5.0728 -1.3824 -3.7768 18 6 5.6898 -3.3498 -3.1881 19 7 5.5615 -4.2626 -2.2514 20 14 6.4300 -3.8058 -4.8414 21 1 7.6494 -2.9921 -5.0792 22 1 6.7890 -5.2467 -4.8426 23 1 5.4406 -3.5408 -5.9167 24 6 5.7211 -2.3468 -0.5518 25 6 4.7177 -3.2556 0.0263 26 7 3.9426 -3.9565 0.4725 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 0.2069 2.3127 -0.0099 31 1 1.3037 4.4964 -0.0012 32 1 5.8812 4.0725 0.1104 33 1 5.8564 5.6507 -0.7123 34 1 5.7149 5.5687 1.0602 35 1 5.1397 2.5607 -0.0001 36 1 5.2318 0.2138 0.4340 37 1 3.7429 -0.7490 0.5898 38 1 5.8514 -5.1730 -2.4185 39 1 6.5677 -2.9268 -0.9193 40 1 6.0631 -1.6495 0.2130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299671312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:18:26 Heat of formation + Delta-G solvation = -60.591872 kcal Electronic energy + Delta-G solvation = -26137.740371 eV Core-core repulsion = 22304.245663 eV Total energy + Delta-G solvation = -3833.494708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.64557 -40.42931 -40.10947 -38.13072 -37.46268 -36.11091 -34.09377 -33.45654 -32.60263 -29.82428 -29.44440 -28.81456 -28.20482 -26.23750 -24.28533 -23.02706 -21.22192 -20.24696 -19.69664 -19.03269 -18.17492 -17.92127 -17.53665 -17.31757 -16.77760 -16.34829 -15.99068 -15.87036 -15.65327 -15.58826 -15.49920 -14.69180 -14.60877 -14.39105 -14.17618 -13.88749 -13.64247 -13.43588 -13.38328 -13.13954 -13.07250 -12.92590 -12.88959 -12.67165 -12.60164 -12.28219 -12.13001 -12.04571 -12.03086 -11.74596 -11.05658 -10.71917 -10.45730 -9.92190 -9.86881 -9.18861 -8.34351 -5.89947 -0.25999 0.34177 1.42934 1.44597 1.50429 1.58691 1.88620 2.14352 2.29905 2.32254 2.39786 2.73911 3.06081 3.21641 3.29877 3.61890 3.68057 3.74801 4.03123 4.16173 4.18476 4.22502 4.29794 4.32835 4.46816 4.50777 4.59670 4.63377 4.69648 4.73372 4.88162 4.96575 5.01280 5.15282 5.19513 5.36126 5.41650 5.53103 5.69549 6.09008 6.34621 6.47339 6.60319 7.07302 7.19128 7.43156 8.01173 8.68385 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.004041 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.439392 B = 6926.866131 C = 7798.991641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.160 3.840 4 C -0.225 4.225 5 C -0.032 4.032 6 C -0.230 4.230 7 C 0.404 3.596 8 C -0.198 4.198 9 O -0.511 6.511 10 C -0.014 4.014 11 C -0.122 4.122 12 C -0.082 4.082 13 C 0.460 3.540 14 O -0.611 6.611 15 N -0.458 5.458 16 C -0.335 4.335 17 H 0.080 0.920 18 C 0.005 3.995 19 N -0.895 5.895 20 Si 0.983 3.017 21 H -0.260 1.260 22 H -0.280 1.280 23 H -0.287 1.287 24 C 0.220 3.780 25 C 0.258 3.742 26 N -0.513 5.513 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.172 0.828 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.273 0.727 39 H 0.127 0.873 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 11.661 9.003 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.113 3.887 4 C -0.244 4.244 5 C -0.050 4.050 6 C -0.231 4.231 7 C 0.287 3.713 8 C -0.255 4.255 9 O -0.391 6.391 10 C -0.032 4.032 11 C -0.123 4.123 12 C -0.122 4.122 13 C 0.250 3.750 14 O -0.495 6.495 15 N -0.178 5.178 16 C -0.463 4.463 17 H 0.098 0.902 18 C -0.197 4.197 19 N -0.535 5.535 20 Si 0.808 3.192 21 H -0.184 1.184 22 H -0.205 1.205 23 H -0.213 1.213 24 C 0.093 3.907 25 C -0.059 4.059 26 N -0.193 5.193 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.170 0.830 31 H 0.156 0.844 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.189 0.811 36 H 0.158 0.842 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.145 0.855 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.365 11.026 9.164 14.342 hybrid contribution -0.243 -0.638 -1.379 1.539 sum -0.607 10.389 7.785 12.996 Atomic orbital electron populations 1.23353 0.76470 1.05160 1.02640 1.86085 1.23643 1.27485 1.87243 1.19534 0.92585 0.84726 0.91856 1.21094 1.01312 0.91455 1.10506 1.21042 0.94187 0.97575 0.92193 1.20540 0.94536 0.95357 1.12678 1.22809 0.93150 0.86398 0.68935 1.22288 0.90815 1.06472 1.05882 1.90501 1.69552 1.39135 1.39929 1.21487 1.01379 0.88950 0.91370 1.18925 0.90504 0.95701 1.07156 1.20479 1.02578 0.95212 0.93882 1.20833 0.79759 0.83018 0.91394 1.90526 1.51464 1.59394 1.48154 1.43791 1.46525 1.21445 1.06075 1.19548 1.45881 0.96745 0.84099 0.90210 1.25803 0.97399 0.94272 1.02184 1.69930 1.44839 1.02815 1.35892 0.85142 0.78976 0.77117 0.77971 1.18404 1.20535 1.21295 1.19173 0.91258 0.91633 0.88628 1.29886 0.93648 0.92636 0.89736 1.80901 1.11596 1.12252 1.14584 0.87577 0.90039 0.92015 0.83029 0.84364 0.87846 0.88206 0.86854 0.81090 0.84187 0.89378 0.91688 0.85540 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.80 113.37 1.11 1.54 16 2 O -0.33 -11.27 9.61 -89.73 -0.86 -12.13 16 3 C 0.16 5.12 6.67 22.67 0.15 5.27 16 4 C -0.23 -6.08 8.96 22.09 0.20 -5.89 16 5 C -0.03 -0.85 9.54 22.32 0.21 -0.63 16 6 C -0.23 -5.95 5.87 -20.15 -0.12 -6.07 16 7 C 0.40 9.61 7.21 27.94 0.20 9.81 16 8 C -0.20 -2.86 10.19 71.23 0.73 -2.13 16 9 O -0.51 -15.46 17.10 -3.08 -0.05 -15.51 16 10 C -0.01 -0.36 9.07 22.57 0.20 -0.15 16 11 C -0.12 -3.76 4.38 -19.80 -0.09 -3.85 16 12 C -0.08 -2.57 4.15 29.10 0.12 -2.44 16 13 C 0.46 19.85 7.56 87.66 0.66 20.52 16 14 O -0.61 -31.73 15.67 -3.08 -0.05 -31.77 16 15 N -0.46 -20.41 2.60 -645.41 -1.68 -22.09 16 16 C -0.34 -17.07 9.36 84.04 0.79 -16.29 16 17 H 0.08 4.43 7.36 -2.91 -0.02 4.41 16 18 C 0.00 0.24 4.92 84.93 0.42 0.66 16 19 N -0.90 -43.88 9.33 21.66 0.20 -43.67 16 20 Si 0.98 39.66 29.60 68.60 2.03 41.69 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 24 C 0.22 7.94 4.91 84.58 0.42 8.36 16 25 C 0.26 10.90 13.04 89.44 1.17 12.07 16 26 N -0.51 -23.79 18.54 20.01 0.37 -23.42 16 27 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.08 1.45 7.66 -2.39 -0.02 1.43 16 29 H 0.06 1.37 7.64 -2.38 -0.02 1.35 16 30 H 0.15 3.25 6.27 -2.91 -0.02 3.23 16 31 H 0.14 3.38 7.65 -2.91 -0.02 3.36 16 32 H 0.10 1.11 5.62 -2.39 -0.01 1.10 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.17 2.99 5.94 -2.91 -0.02 2.97 16 36 H 0.14 2.93 7.32 -2.39 -0.02 2.91 16 37 H 0.09 2.89 7.08 -2.39 -0.02 2.88 16 38 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 39 H 0.13 4.75 6.33 -2.39 -0.02 4.73 16 40 H 0.14 3.37 6.67 -2.39 -0.02 3.35 16 Total: -1.00 -75.51 347.67 7.23 -68.28 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.10 Total: 17.88 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 6.17 Total: 20.76 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -1.11 Total: -89.19 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: -0.96 Total: -59.42 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -75.51 7.23 -68.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299671312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.684 kcal (2) G-P(sol) polarization free energy of solvation -75.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds