Wall clock time and date at job start Fri Apr 10 2020 23:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47392 * 2 1 4 4 C 1.50706 * 109.47321 * 119.99871 * 2 1 3 5 5 H 1.07997 * 119.99969 * 120.00013 * 4 2 1 6 6 C 1.37877 * 119.99881 * 300.00507 * 4 2 1 7 7 N 1.31515 * 120.00198 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99651 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47044 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46908 * 299.99009 * 8 6 4 11 11 H 1.48492 * 109.47241 * 59.99468 * 8 6 4 12 12 N 1.46503 * 109.47287 * 239.99822 * 2 1 3 13 13 C 1.34781 * 119.99638 * 84.99720 * 12 2 1 14 14 O 1.21554 * 120.00068 * 0.02562 * 13 12 2 15 15 C 1.47859 * 119.99740 * 179.97438 * 13 12 2 16 16 C 1.39616 * 120.11343 * 359.73541 * 15 13 12 17 17 C 1.37973 * 119.98303 * 179.69115 * 16 15 13 18 18 C 1.38269 * 120.21858 * 0.57708 * 17 16 15 19 19 C 1.38903 * 120.22518 * 359.71969 * 18 17 16 20 20 N 1.40224 * 119.99492 * 179.97438 * 19 18 17 21 21 C 1.33881 * 122.75818 * 112.41571 * 20 19 18 22 22 O 1.21221 * 125.39935 * 359.97438 * 21 20 19 23 23 C 1.51323 * 109.20277 * 179.84669 * 21 20 19 24 24 C 1.54226 * 103.55372 * 0.38460 * 23 21 20 25 25 C 1.33873 * 122.76612 * 292.70682 * 20 19 18 26 26 O 1.21225 * 125.39524 * 0.02562 * 25 20 19 27 27 C 1.38595 * 120.01246 * 359.97438 * 19 18 17 28 28 H 1.08998 * 109.46933 * 299.99970 * 1 2 3 29 29 H 1.08996 * 109.47369 * 59.99839 * 1 2 3 30 30 H 1.09000 * 109.46712 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99735 * 180.02562 * 7 6 4 32 32 H 0.96992 * 120.00289 * 264.99956 * 12 2 1 33 33 H 1.08006 * 120.00567 * 359.97438 * 16 15 13 34 34 H 1.07998 * 119.89227 * 180.27025 * 17 16 15 35 35 H 1.07994 * 119.88570 * 179.69137 * 18 17 16 36 36 H 1.08999 * 110.79228 * 241.77549 * 23 21 20 37 37 H 1.09000 * 110.54642 * 118.87651 * 23 21 20 38 38 H 1.09003 * 110.60633 * 241.26072 * 24 23 21 39 39 H 1.09005 * 110.73537 * 118.36379 * 24 23 21 40 40 H 1.07999 * 120.10850 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8301 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 1.8279 -0.4193 5.2205 10 1 1.8281 -2.5198 4.0082 11 1 3.8075 -1.1189 4.0077 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1612 -2.4116 15 6 2.6405 -0.7151 -3.5643 16 6 2.9790 -2.0682 -3.5027 17 6 3.4331 -2.7174 -4.6323 18 6 3.5659 -2.0295 -5.8243 19 6 3.2375 -0.6816 -5.8941 20 7 3.3745 0.0115 -7.1054 21 6 2.3264 0.4767 -7.7963 22 8 1.1642 0.3605 -7.4722 23 6 2.8228 1.1734 -9.0446 24 6 4.3550 1.0198 -8.9591 25 6 4.5637 0.2575 -7.6689 26 8 5.6375 -0.0779 -7.2172 27 6 2.7744 -0.0217 -4.7668 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.7094 1.1617 3.4845 32 1 2.2491 -1.6317 -1.1526 33 1 2.8811 -2.6077 -2.5722 34 1 3.6905 -3.7652 -4.5841 35 1 3.9266 -2.5418 -6.7040 36 1 2.5418 2.2265 -9.0376 37 1 2.4370 0.6805 -9.9369 38 1 4.8364 1.9965 -8.9097 39 1 4.7336 0.4493 -9.8074 40 1 2.5182 1.0262 -4.8194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338081299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:18:38 Heat of formation + Delta-G solvation = -92.259651 kcal Electronic energy + Delta-G solvation = -25504.828133 eV Core-core repulsion = 21669.960208 eV Total energy + Delta-G solvation = -3834.867926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.26743 -41.15729 -39.75238 -39.36335 -37.04577 -36.83032 -34.79402 -34.22052 -32.50770 -31.19666 -30.14562 -27.39004 -27.18733 -25.45683 -24.42316 -23.40219 -22.74284 -21.79664 -20.75560 -19.54837 -18.48658 -18.14471 -17.69663 -17.46467 -17.32654 -17.09214 -16.38116 -16.03000 -15.97841 -15.75457 -15.37570 -15.00085 -14.97389 -14.87341 -14.51950 -14.47309 -13.92715 -13.72998 -13.64446 -13.09896 -13.03332 -12.90721 -12.77553 -12.73264 -12.30698 -12.17510 -12.11377 -11.78402 -11.49559 -11.22506 -11.17511 -10.95309 -10.62729 -10.25716 -10.01834 -9.81702 -8.20166 -6.38756 -0.36284 0.00401 0.41394 1.34785 1.44336 1.47060 1.54794 1.58031 1.78097 2.26615 2.49002 2.64061 3.10352 3.18970 3.27957 3.59775 3.61059 3.69637 3.83745 3.95509 4.03972 4.16106 4.26214 4.56597 4.70169 4.75239 4.79728 4.85885 4.89474 4.93303 5.01074 5.03832 5.11853 5.14629 5.36170 5.51892 5.59206 5.64659 5.68449 5.83917 6.03208 6.23754 6.66736 6.67207 6.80532 7.24608 7.40098 8.86475 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025498 B = 0.002799 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.843416 B =10000.782697 C =10417.377627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H -0.002 1.002 4 C -0.550 4.550 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.977 3.023 9 H -0.286 1.286 10 H -0.261 1.261 11 H -0.270 1.270 12 N -0.692 5.692 13 C 0.539 3.461 14 O -0.599 6.599 15 C -0.134 4.134 16 C -0.073 4.073 17 C -0.099 4.099 18 C -0.078 4.078 19 C 0.083 3.917 20 N -0.538 5.538 21 C 0.513 3.487 22 O -0.519 6.519 23 C -0.135 4.135 24 C -0.134 4.134 25 C 0.518 3.482 26 O -0.513 6.513 27 C -0.068 4.068 28 H 0.070 0.930 29 H 0.008 0.992 30 H 0.044 0.956 31 H 0.267 0.733 32 H 0.407 0.593 33 H 0.157 0.843 34 H 0.183 0.817 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -6.808 -26.740 28.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.016 0.984 4 C -0.588 4.588 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.801 3.199 9 H -0.212 1.212 10 H -0.186 1.186 11 H -0.195 1.195 12 N -0.341 5.341 13 C 0.327 3.673 14 O -0.482 6.482 15 C -0.137 4.137 16 C -0.091 4.091 17 C -0.117 4.117 18 C -0.098 4.098 19 C -0.006 4.006 20 N -0.278 5.278 21 C 0.305 3.695 22 O -0.392 6.392 23 C -0.174 4.174 24 C -0.173 4.173 25 C 0.310 3.690 26 O -0.386 6.386 27 C -0.088 4.088 28 H 0.089 0.911 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.243 0.757 33 H 0.175 0.825 34 H 0.201 0.799 35 H 0.174 0.826 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.166 0.834 39 H 0.177 0.823 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.325 -6.097 -26.190 27.870 hybrid contribution -0.093 -0.112 1.539 1.546 sum 7.231 -6.209 -24.650 26.429 Atomic orbital electron populations 1.21916 0.98124 0.99721 0.99588 1.18431 0.91267 0.91994 0.81614 0.98362 1.21498 1.32943 1.13816 0.90533 0.90460 1.25851 0.94749 0.95563 1.02453 1.70054 1.36862 1.23904 1.24819 0.85332 0.78632 0.78753 0.77232 1.21168 1.18563 1.19527 1.46185 1.64324 1.14276 1.09281 1.18793 0.77874 0.86350 0.84303 1.90692 1.53592 1.17987 1.85920 1.19852 1.05089 0.96011 0.92776 1.21787 0.94626 0.91701 1.01016 1.21460 0.97771 1.02177 0.90253 1.21619 0.96592 0.91181 1.00372 1.17702 1.04913 0.92703 0.85274 1.44815 1.11559 1.51258 1.20201 1.22198 0.83721 0.76760 0.86797 1.90807 1.19129 1.56221 1.73034 1.22636 0.94919 1.05078 0.94760 1.22638 0.96619 1.04220 0.93786 1.22077 0.81317 0.77826 0.87738 1.90784 1.27541 1.51922 1.68334 1.21046 0.96830 0.99654 0.91275 0.91104 0.97283 0.93716 0.92431 0.75656 0.82541 0.79928 0.82639 0.83584 0.82519 0.83443 0.82260 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.14 9.26 71.98 0.67 -6.47 16 2 C 0.27 14.62 2.56 44.25 0.11 14.73 16 3 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 4 C -0.55 -29.59 8.73 25.60 0.22 -29.37 16 5 H 0.08 3.82 7.74 -2.91 -0.02 3.79 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -53.57 11.32 21.45 0.24 -53.33 16 8 Si 0.98 42.20 29.54 68.60 2.03 44.23 16 9 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 N -0.69 -30.77 5.02 -448.94 -2.25 -33.02 16 13 C 0.54 24.54 7.74 86.79 0.67 25.22 16 14 O -0.60 -32.86 16.01 -3.89 -0.06 -32.93 16 15 C -0.13 -4.76 5.87 -20.10 -0.12 -4.88 16 16 C -0.07 -1.87 9.54 22.54 0.21 -1.66 16 17 C -0.10 -1.93 10.02 22.21 0.22 -1.70 16 18 C -0.08 -1.72 9.79 22.44 0.22 -1.50 16 19 C 0.08 2.32 4.94 38.04 0.19 2.51 16 20 N -0.54 -11.89 2.61 -579.82 -1.51 -13.41 16 21 C 0.51 10.21 7.96 87.99 0.70 10.91 16 22 O -0.52 -15.58 17.60 -2.85 -0.05 -15.63 16 23 C -0.14 -0.66 7.03 30.46 0.21 -0.44 16 24 C -0.13 -0.51 7.03 30.46 0.21 -0.30 16 25 C 0.52 9.19 7.95 87.99 0.70 9.89 16 26 O -0.51 -13.16 17.60 -2.86 -0.05 -13.21 16 27 C -0.07 -2.38 9.35 22.65 0.21 -2.16 16 28 H 0.07 4.05 6.07 -2.39 -0.01 4.04 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 30 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.41 14.77 6.57 -92.71 -0.61 14.16 16 33 H 0.16 3.30 6.40 -2.91 -0.02 3.29 16 34 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.16 -0.18 8.14 -2.39 -0.02 -0.19 16 38 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.16 -0.40 8.14 -2.38 -0.02 -0.42 16 40 H 0.11 4.33 7.65 -2.91 -0.02 4.31 16 Total: -1.00 -87.29 349.36 3.71 -83.58 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.48 Total: 17.74 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 4.89 Total: 15.98 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -3.52 Total: -99.75 kcal Atomic # 8 Polarization: -61.60 SS G_CDS: -0.16 Total: -61.77 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -87.29 3.71 -83.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338081299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.683 kcal (2) G-P(sol) polarization free energy of solvation -87.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds