Wall clock time and date at job start Fri Apr 10 2020 23:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99851 * 2 1 4 4 C 1.38853 * 119.98891 * 0.02562 * 3 2 1 5 5 C 1.38229 * 120.22256 * 179.97438 * 4 3 2 6 6 C 1.38038 * 120.19086 * 359.76388 * 5 4 3 7 7 C 1.39482 * 119.97356 * 0.50671 * 6 5 4 8 8 C 1.48015 * 120.10895 * 179.73933 * 7 6 5 9 9 C 1.36661 * 126.58793 * 359.73558 * 8 7 6 10 10 C 1.41225 * 105.44808 * 180.02562 * 9 8 7 11 11 C 1.47616 * 126.34258 * 179.73470 * 10 9 8 12 12 O 1.21489 * 119.99488 * 0.02562 * 11 10 9 13 13 O 1.34726 * 120.00069 * 179.97438 * 11 10 9 14 14 C 1.45203 * 116.99662 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46605 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47045 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99668 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00304 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00152 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46950 * 59.99665 * 20 18 16 22 22 H 1.48502 * 109.47017 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.46694 * 299.99919 * 20 18 16 24 24 N 1.31892 * 107.32027 * 0.02562 * 10 9 8 25 25 N 1.28446 * 110.42020 * 359.97438 * 24 10 9 26 26 H 0.97007 * 125.00581 * 180.02562 * 25 24 10 27 27 C 1.38464 * 119.98984 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47495 * 299.99894 * 1 2 3 30 30 H 1.09003 * 109.47126 * 60.00442 * 1 2 3 31 31 H 1.08003 * 119.88882 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.90333 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.00958 * 180.28188 * 6 5 4 34 34 H 1.07998 * 127.27970 * 0.03938 * 9 8 7 35 35 H 1.09005 * 109.47275 * 300.00251 * 14 13 11 36 36 H 1.08994 * 109.46954 * 60.00218 * 14 13 11 37 37 H 1.08991 * 109.47454 * 299.99811 * 15 14 13 38 38 H 1.09002 * 109.47310 * 60.00589 * 15 14 13 39 39 H 0.96998 * 119.99920 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.09914 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 0.0005 5 6 1.9119 3.6095 0.0011 6 6 3.2898 3.6920 0.0060 7 6 4.0577 2.5275 -0.0002 8 6 5.5354 2.6125 -0.0008 9 6 6.2856 3.7548 -0.0008 10 6 7.6299 3.3220 -0.0021 11 6 8.8270 4.1857 -0.0080 12 8 8.7039 5.3943 -0.0119 13 8 10.0560 3.6336 -0.0081 14 6 11.1874 4.5437 -0.0135 15 6 12.4888 3.7393 -0.0134 16 6 13.6631 4.6838 -0.0184 17 1 13.4977 5.7510 -0.0218 18 6 14.9486 4.1855 -0.0197 19 7 15.1502 2.8858 -0.0161 20 14 16.4043 5.3563 -0.0252 21 1 16.3535 6.2149 1.1854 22 1 17.6675 4.5755 -0.0252 23 1 16.3489 6.2091 -1.2396 24 7 7.6177 2.0031 -0.0033 25 7 6.4099 1.5661 -0.0025 26 1 6.1570 0.6295 -0.0027 27 6 3.4287 1.2832 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2110 2.3164 0.0005 32 1 1.3185 4.5118 0.0019 33 1 3.7731 4.6578 0.0110 34 1 5.9264 4.7733 0.0003 35 1 11.1468 5.1685 -0.9058 36 1 11.1499 5.1751 0.8741 37 1 12.5296 3.1143 0.8786 38 1 12.5260 3.1082 -0.9013 39 1 16.0546 2.5353 -0.0166 40 1 4.0184 0.3783 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767602945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:17 Heat of formation + Delta-G solvation = -30.682328 kcal Electronic energy + Delta-G solvation = -24009.865257 eV Core-core repulsion = 20177.667524 eV Total energy + Delta-G solvation = -3832.197733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.82316 -40.52421 -39.57336 -37.92867 -36.01576 -33.31494 -32.94801 -32.24810 -31.08686 -30.17547 -29.11199 -27.79564 -25.60850 -24.16488 -23.45608 -22.91860 -21.16223 -20.87466 -19.99345 -19.16831 -17.63676 -17.00044 -16.70370 -16.33476 -16.29692 -16.17050 -16.16374 -15.73688 -15.34330 -14.53960 -14.40478 -14.34683 -14.03301 -13.59177 -13.32788 -13.11010 -12.76644 -12.60994 -12.30988 -12.09735 -11.74695 -11.50483 -11.18782 -11.03319 -11.00722 -10.70870 -10.69171 -10.38155 -10.28283 -9.66469 -9.59488 -9.53027 -9.25902 -8.93126 -8.48568 -8.38602 -6.04735 -4.09165 0.37008 0.93880 1.45904 2.04617 2.47149 2.69091 3.16996 3.30830 3.34098 3.37838 3.39833 3.41600 4.08628 4.22706 4.35468 4.45151 4.54055 4.56409 4.62225 4.73582 4.82071 4.91160 4.97251 5.13265 5.31499 5.36469 5.41641 5.50214 5.73164 5.91831 6.00620 6.05221 6.14876 6.15833 6.17515 6.66801 6.70663 6.84025 6.96144 7.57542 7.64851 7.69999 7.92874 8.24076 8.31668 8.96262 9.54752 11.06691 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.043518 B = 0.001865 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.257725 B =15006.652135 C =15624.151073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.134 3.866 4 C -0.206 4.206 5 C -0.071 4.071 6 C -0.132 4.132 7 C 0.025 3.975 8 C 0.043 3.957 9 C -0.145 4.145 10 C 0.008 3.992 11 C 0.546 3.454 12 O -0.507 6.507 13 O -0.340 6.340 14 C 0.074 3.926 15 C 0.024 3.976 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 N -0.210 5.210 25 N -0.373 5.373 26 H 0.448 0.552 27 C -0.150 4.150 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.171 0.829 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.782 -4.632 0.053 34.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.089 3.911 4 C -0.225 4.225 5 C -0.089 4.089 6 C -0.151 4.151 7 C 0.023 3.977 8 C -0.080 4.080 9 C -0.172 4.172 10 C -0.150 4.150 11 C 0.388 3.612 12 O -0.394 6.394 13 O -0.255 6.255 14 C 0.002 3.998 15 C -0.013 4.013 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 N -0.047 5.047 25 N -0.091 5.091 26 H 0.294 0.706 27 C -0.170 4.170 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.188 0.812 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -32.747 -5.461 0.051 33.199 hybrid contribution -0.060 0.896 -0.004 0.898 sum -32.807 -4.564 0.047 33.123 Atomic orbital electron populations 1.23096 0.78017 1.04205 1.01499 1.86083 1.21677 1.26681 1.88623 1.18762 0.91822 0.84436 0.96080 1.21351 1.00287 0.92318 1.08521 1.20901 0.94201 0.97243 0.96580 1.21097 0.93548 0.97808 1.02669 1.17582 0.87893 0.93169 0.99052 1.19763 0.90435 0.87936 1.09880 1.21692 0.90136 0.99186 1.06233 1.20904 0.92932 0.89569 1.11602 1.19526 0.83110 0.85425 0.73138 1.90825 1.87425 1.14588 1.46586 1.86672 1.14250 1.42488 1.82058 1.23726 0.82800 0.92152 1.01119 1.19171 0.87171 0.95908 0.99030 1.20950 0.90336 0.92937 1.52242 0.92250 1.24984 0.99019 0.95238 0.94921 1.69974 1.21649 1.11452 1.49728 0.86528 0.81319 0.80652 0.78754 1.20084 1.21171 1.20081 1.73821 1.02411 1.12970 1.15500 1.43712 1.02542 1.09806 1.52994 0.70620 1.20242 0.91895 0.97283 1.07584 0.88052 0.92467 0.92459 0.85161 0.84950 0.84693 0.81186 0.92076 0.92068 0.95248 0.95247 0.92701 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.09 16 2 O -0.32 -2.36 10.49 -19.44 -0.20 -2.56 16 3 C 0.13 1.05 6.68 -39.27 -0.26 0.78 16 4 C -0.21 -1.30 9.03 -39.36 -0.36 -1.66 16 5 C -0.07 -0.44 10.03 -39.66 -0.40 -0.84 16 6 C -0.13 -0.99 9.57 -39.19 -0.38 -1.37 16 7 C 0.02 0.22 5.87 -104.98 -0.62 -0.40 16 8 C 0.04 0.46 6.98 -82.41 -0.58 -0.11 16 9 C -0.15 -1.84 10.15 -39.02 -0.40 -2.24 16 10 C 0.01 0.12 7.14 -82.88 -0.59 -0.47 16 11 C 0.55 10.67 7.97 34.56 0.28 10.95 16 12 O -0.51 -10.48 16.71 -19.26 -0.32 -10.81 16 13 O -0.34 -7.44 10.23 -40.56 -0.41 -7.86 16 14 C 0.07 1.73 5.41 37.16 0.20 1.93 16 15 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 16 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 20 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 N -0.21 -3.18 12.22 33.36 0.41 -2.77 16 25 N -0.37 -4.06 6.80 33.31 0.23 -3.83 16 26 H 0.45 3.20 8.08 -190.45 -1.54 1.66 16 27 C -0.15 -1.22 9.65 -39.06 -0.38 -1.60 16 28 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.15 7.66 -51.93 -0.40 -0.24 16 30 H 0.06 0.15 7.66 -51.93 -0.40 -0.24 16 31 H 0.13 0.53 6.28 -52.48 -0.33 0.20 16 32 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.14 0.85 7.09 -52.49 -0.37 0.48 16 34 H 0.17 1.81 7.39 -52.49 -0.39 1.42 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.13 0.84 7.19 -52.48 -0.38 0.46 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -34.87 354.96 -8.16 -43.03 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.88 Total: -3.95 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -3.04 Total: -7.19 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 1.37 Total: -32.72 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.94 Total: -21.23 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.87 -8.16 -43.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767602945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.345 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds