Wall clock time and date at job start Fri Apr 10 2020 23:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99851 * 2 1 4 4 C 1.38853 * 119.98891 * 0.02562 * 3 2 1 5 5 C 1.38229 * 120.22256 * 179.97438 * 4 3 2 6 6 C 1.38038 * 120.19086 * 359.76388 * 5 4 3 7 7 C 1.39482 * 119.97356 * 0.50671 * 6 5 4 8 8 C 1.48015 * 120.10895 * 179.73933 * 7 6 5 9 9 C 1.36661 * 126.58793 * 359.73558 * 8 7 6 10 10 C 1.41225 * 105.44808 * 180.02562 * 9 8 7 11 11 C 1.47616 * 126.34258 * 179.73470 * 10 9 8 12 12 O 1.21489 * 119.99488 * 0.02562 * 11 10 9 13 13 O 1.34726 * 120.00069 * 179.97438 * 11 10 9 14 14 C 1.45203 * 116.99662 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46605 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47045 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99668 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00304 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00152 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46950 * 59.99665 * 20 18 16 22 22 H 1.48502 * 109.47017 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.46694 * 299.99919 * 20 18 16 24 24 N 1.31892 * 107.32027 * 0.02562 * 10 9 8 25 25 N 1.28446 * 110.42020 * 359.97438 * 24 10 9 26 26 H 0.97007 * 125.00581 * 180.02562 * 25 24 10 27 27 C 1.38464 * 119.98984 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47495 * 299.99894 * 1 2 3 30 30 H 1.09003 * 109.47126 * 60.00442 * 1 2 3 31 31 H 1.08003 * 119.88882 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.90333 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.00958 * 180.28188 * 6 5 4 34 34 H 1.07998 * 127.27970 * 0.03938 * 9 8 7 35 35 H 1.09005 * 109.47275 * 300.00251 * 14 13 11 36 36 H 1.08994 * 109.46954 * 60.00218 * 14 13 11 37 37 H 1.08991 * 109.47454 * 299.99811 * 15 14 13 38 38 H 1.09002 * 109.47310 * 60.00589 * 15 14 13 39 39 H 0.96998 * 119.99920 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.09914 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 0.0005 5 6 1.9119 3.6095 0.0011 6 6 3.2898 3.6920 0.0060 7 6 4.0577 2.5275 -0.0002 8 6 5.5354 2.6125 -0.0008 9 6 6.2856 3.7548 -0.0008 10 6 7.6299 3.3220 -0.0021 11 6 8.8270 4.1857 -0.0080 12 8 8.7039 5.3943 -0.0119 13 8 10.0560 3.6336 -0.0081 14 6 11.1874 4.5437 -0.0135 15 6 12.4888 3.7393 -0.0134 16 6 13.6631 4.6838 -0.0184 17 1 13.4977 5.7510 -0.0218 18 6 14.9486 4.1855 -0.0197 19 7 15.1502 2.8858 -0.0161 20 14 16.4043 5.3563 -0.0252 21 1 16.3535 6.2149 1.1854 22 1 17.6675 4.5755 -0.0252 23 1 16.3489 6.2091 -1.2396 24 7 7.6177 2.0031 -0.0033 25 7 6.4099 1.5661 -0.0025 26 1 6.1570 0.6295 -0.0027 27 6 3.4287 1.2832 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2110 2.3164 0.0005 32 1 1.3185 4.5118 0.0019 33 1 3.7731 4.6578 0.0110 34 1 5.9264 4.7733 0.0003 35 1 11.1468 5.1685 -0.9058 36 1 11.1499 5.1751 0.8741 37 1 12.5296 3.1143 0.8786 38 1 12.5260 3.1082 -0.9013 39 1 16.0546 2.5353 -0.0166 40 1 4.0184 0.3783 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767602945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:16 Heat of formation + Delta-G solvation = -52.498785 kcal Electronic energy + Delta-G solvation = -24010.811289 eV Core-core repulsion = 20177.667524 eV Total energy + Delta-G solvation = -3833.143765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.84603 -41.23449 -40.98317 -38.44705 -37.71378 -35.44663 -33.76842 -33.27123 -32.29179 -31.58509 -29.87924 -28.14869 -27.42912 -25.69011 -24.23483 -23.58297 -22.88799 -21.93474 -21.39342 -19.85443 -19.00969 -18.30120 -17.75840 -17.69755 -17.44384 -17.15494 -16.83076 -16.72027 -16.54725 -16.48971 -15.15375 -15.03773 -14.99569 -14.67016 -14.53704 -14.36434 -14.16722 -13.76570 -13.15957 -13.06597 -13.02436 -12.63744 -12.60538 -12.58018 -12.18291 -12.16725 -12.06949 -11.83625 -11.59467 -11.49103 -11.43011 -11.02384 -10.67272 -10.59499 -9.56193 -9.12741 -8.25439 -6.39427 -0.29212 0.15855 0.41665 1.23719 1.36053 1.43850 1.46519 1.54887 1.88048 1.96453 2.29765 2.41557 2.79947 3.08610 3.15724 3.38546 3.76557 3.90082 4.06125 4.16599 4.19500 4.23103 4.28747 4.31019 4.32201 4.42469 4.47588 4.67736 4.68987 4.76528 4.89916 5.05525 5.21074 5.23083 5.38300 5.44739 5.46148 5.46720 5.67129 5.72890 5.84634 6.06500 6.39449 6.47585 6.73044 6.76253 7.30260 8.87155 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.043518 B = 0.001865 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.257725 B =15006.652135 C =15624.151073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.120 3.880 4 C -0.199 4.199 5 C -0.071 4.071 6 C -0.136 4.136 7 C 0.006 3.994 8 C 0.069 3.931 9 C -0.152 4.152 10 C -0.021 4.021 11 C 0.546 3.454 12 O -0.523 6.523 13 O -0.355 6.355 14 C 0.089 3.911 15 C 0.030 3.970 16 C -0.551 4.551 17 H 0.069 0.931 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.977 3.023 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.265 1.265 24 N -0.238 5.238 25 N -0.354 5.354 26 H 0.463 0.537 27 C -0.159 4.159 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.188 0.812 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.005 0.995 38 H 0.005 0.995 39 H 0.268 0.732 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.096 -3.715 0.052 36.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.075 3.925 4 C -0.218 4.218 5 C -0.089 4.089 6 C -0.155 4.155 7 C 0.004 3.996 8 C -0.056 4.056 9 C -0.179 4.179 10 C -0.177 4.177 11 C 0.390 3.610 12 O -0.411 6.411 13 O -0.270 6.270 14 C 0.016 3.984 15 C -0.007 4.007 16 C -0.589 4.589 17 H 0.087 0.913 18 C -0.195 4.195 19 N -0.567 5.567 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.205 1.205 23 H -0.189 1.189 24 N -0.077 5.077 25 N -0.074 5.074 26 H 0.312 0.688 27 C -0.178 4.178 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.173 0.827 32 H 0.178 0.822 33 H 0.163 0.837 34 H 0.205 0.795 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -35.092 -4.555 0.050 35.387 hybrid contribution 0.385 0.476 -0.003 0.612 sum -34.707 -4.079 0.047 34.946 Atomic orbital electron populations 1.23371 0.76183 1.05606 1.02530 1.86058 1.23664 1.26728 1.88639 1.18932 0.91907 0.85201 0.96485 1.21704 1.01596 0.91826 1.06637 1.21240 0.93812 0.98328 0.95528 1.21354 0.94343 0.97805 1.02033 1.17550 0.86492 0.94140 1.01452 1.19987 0.91322 0.86959 1.07301 1.21887 0.88572 1.00691 1.06725 1.20640 0.92643 0.89957 1.14445 1.19992 0.82919 0.85857 0.72244 1.90794 1.87499 1.15295 1.47479 1.86652 1.15087 1.42513 1.82777 1.23297 0.82092 0.91439 1.01557 1.18989 0.89483 0.95637 0.96598 1.21356 0.91247 0.93616 1.52640 0.91308 1.26017 1.02328 0.97096 0.94015 1.70110 1.22648 1.13616 1.50315 0.85325 0.77010 0.78258 0.79383 1.18939 1.20536 1.18929 1.73728 1.04412 1.12784 1.16804 1.43750 1.01559 1.10877 1.51183 0.68762 1.20396 0.92628 0.97376 1.07450 0.86677 0.91380 0.91372 0.82745 0.82200 0.83707 0.79491 0.91556 0.91544 0.97700 0.97700 0.92366 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 113.37 1.11 1.20 16 2 O -0.34 -4.42 10.49 -92.47 -0.97 -5.39 16 3 C 0.12 1.63 6.68 22.47 0.15 1.78 16 4 C -0.20 -1.92 9.03 22.41 0.20 -1.72 16 5 C -0.07 -0.66 10.03 22.22 0.22 -0.43 16 6 C -0.14 -1.74 9.57 22.52 0.22 -1.52 16 7 C 0.01 0.09 5.87 -20.10 -0.12 -0.03 16 8 C 0.07 1.40 6.98 40.66 0.28 1.68 16 9 C -0.15 -3.76 10.15 22.63 0.23 -3.53 16 10 C -0.02 -0.70 7.14 42.35 0.30 -0.39 16 11 C 0.55 21.94 7.97 70.30 0.56 22.50 16 12 O -0.52 -21.93 16.71 19.87 0.33 -21.60 16 13 O -0.35 -16.15 10.23 -56.36 -0.58 -16.73 16 14 C 0.09 4.26 5.41 71.98 0.39 4.65 16 15 C 0.03 1.70 5.35 29.85 0.16 1.86 16 16 C -0.55 -32.15 9.11 25.60 0.23 -31.91 16 17 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 18 C 0.00 0.25 5.46 84.65 0.46 0.71 16 19 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 20 Si 0.98 44.48 29.54 68.60 2.03 46.51 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 N -0.24 -7.33 12.22 -48.38 -0.59 -7.93 16 25 N -0.35 -7.53 6.80 -48.52 -0.33 -7.86 16 26 H 0.46 6.31 8.08 -220.00 -1.78 4.53 16 27 C -0.16 -2.35 9.65 22.61 0.22 -2.13 16 28 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 29 H 0.07 0.18 7.66 -2.39 -0.02 0.16 16 30 H 0.07 0.18 7.66 -2.39 -0.02 0.16 16 31 H 0.16 0.67 6.28 -2.91 -0.02 0.65 16 32 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.15 1.50 7.09 -2.91 -0.02 1.48 16 34 H 0.19 3.78 7.39 -2.91 -0.02 3.76 16 35 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 36 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.14 1.63 7.19 -2.91 -0.02 1.61 16 Total: -1.00 -76.50 354.96 4.11 -72.39 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -0.69 Total: 4.72 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 4.62 Total: -7.29 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -0.64 Total: -72.61 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.21 Total: -43.72 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -76.50 4.11 -72.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767602945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.895 kcal (2) G-P(sol) polarization free energy of solvation -76.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds