Wall clock time and date at job start Fri Apr 10 2020 23:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34950 * 126.03274 * 2 1 4 4 C 1.35321 * 107.74063 * 179.74871 * 3 2 1 5 5 C 1.39860 * 107.92168 * 0.38775 * 4 3 2 6 6 C 1.50706 * 125.89946 * 179.86485 * 5 4 3 7 7 C 1.50702 * 109.47006 * 124.71602 * 6 5 4 8 8 O 1.20819 * 120.00288 * 0.02562 * 7 6 5 9 9 O 1.34233 * 119.99413 * 180.02562 * 7 6 5 10 10 C 1.45201 * 116.99421 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47203 * 179.97438 * 10 9 7 12 12 C 1.38300 * 119.93634 * 269.73207 * 11 10 9 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31556 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47223 * 90.00094 * 20 18 16 22 22 H 1.48499 * 109.47046 * 209.99924 * 20 18 16 23 23 H 1.48492 * 109.47326 * 329.99691 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 N 1.30838 * 108.20655 * 359.60690 * 5 4 3 27 27 H 1.08998 * 109.47379 * 269.97805 * 1 2 3 28 28 H 1.08999 * 109.47171 * 29.98334 * 1 2 3 29 29 H 1.09004 * 109.46679 * 149.98357 * 1 2 3 30 30 H 1.07995 * 126.13082 * 359.97438 * 3 2 1 31 31 H 1.08002 * 126.03784 * 180.26995 * 4 3 2 32 32 H 1.08998 * 109.46627 * 4.71506 * 6 5 4 33 33 H 1.09000 * 109.47236 * 244.71565 * 6 5 4 34 34 H 1.08999 * 109.47236 * 60.00282 * 10 9 7 35 35 H 1.09004 * 109.47450 * 300.00284 * 10 9 7 36 36 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 37 37 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 38 38 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 40 40 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 0.0057 5 6 3.5347 -0.7320 0.0002 6 6 4.7497 -1.6235 0.0008 7 6 4.6722 -2.5776 1.1648 8 8 3.7271 -2.5380 1.9164 9 8 5.6532 -3.4713 1.3664 10 6 5.5125 -4.3582 2.5074 11 6 6.6989 -5.2850 2.5726 12 6 6.6594 -6.5037 1.9199 13 6 7.7473 -7.3527 1.9729 14 6 8.8774 -6.9868 2.6925 15 8 9.9458 -7.8220 2.7520 16 6 11.0511 -7.3590 3.3700 17 1 11.0324 -6.3972 3.8610 18 6 12.2118 -8.1175 3.3752 19 7 12.2347 -9.2888 2.7767 20 14 13.7428 -7.4762 4.2319 21 1 13.7408 -7.9220 5.6484 22 1 14.9506 -8.0047 3.5484 23 1 13.7542 -5.9922 4.1801 24 6 8.9119 -5.7648 3.3516 25 6 7.8229 -4.9178 3.2901 26 7 2.2892 -1.1327 0.0001 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8899 -0.5141 30 1 1.9281 2.1194 -0.0004 31 1 4.4210 1.2964 0.0113 32 1 5.6482 -1.0130 0.0906 33 1 4.7861 -2.1887 -0.9305 34 1 4.5995 -4.9443 2.4016 35 1 5.4613 -3.7680 3.4224 36 1 5.7783 -6.7900 1.3647 37 1 7.7175 -8.3023 1.4594 38 1 13.0466 -9.8197 2.7806 39 1 9.7891 -5.4776 3.9123 40 1 7.8492 -3.9672 3.8020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782382790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:25 Heat of formation + Delta-G solvation = -5.036702 kcal Electronic energy + Delta-G solvation = -24143.608739 eV Core-core repulsion = 20312.523084 eV Total energy + Delta-G solvation = -3831.085655 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48961 -40.17974 -39.03457 -36.97715 -35.95386 -34.16973 -32.42415 -31.16165 -30.44056 -30.21746 -29.85163 -26.49473 -25.79732 -24.73397 -22.03243 -21.76290 -21.40912 -20.54436 -19.71031 -18.05752 -17.57139 -17.26700 -17.06873 -16.36542 -16.23000 -15.59511 -14.78122 -14.62764 -14.41475 -14.31288 -14.07499 -13.71320 -13.55993 -13.49455 -13.07683 -12.88979 -12.75880 -12.70154 -12.56994 -12.30396 -12.06910 -11.70291 -11.36888 -11.00789 -10.84324 -10.78884 -10.67553 -10.47726 -10.36792 -10.31364 -9.51614 -9.38803 -8.89048 -8.82931 -8.23837 -7.30391 -6.50500 -4.09109 1.61758 1.97067 2.18300 2.23518 2.33142 2.45460 3.07995 3.11405 3.16236 3.20553 3.92803 4.11180 4.44576 4.50747 4.57894 4.79655 4.92037 4.98511 5.04876 5.07938 5.19382 5.19945 5.27149 5.29984 5.40461 5.51532 5.65154 5.68776 5.76221 5.80732 6.15861 6.32948 6.36380 6.61779 6.64149 6.73017 6.83926 6.99678 7.18122 7.30161 7.37998 7.47082 7.74574 7.91269 7.94401 8.94799 9.63124 10.67011 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.034983 B = 0.001947 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.195825 B =14379.868850 C =14794.935385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.050 3.950 4 C -0.262 4.262 5 C 0.076 3.924 6 C -0.032 4.032 7 C 0.459 3.541 8 O -0.501 6.501 9 O -0.351 6.351 10 C 0.131 3.869 11 C -0.203 4.203 12 C -0.049 4.049 13 C -0.196 4.196 14 C 0.163 3.837 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.943 3.057 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.238 4.238 25 C -0.045 4.045 26 N -0.264 5.264 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.174 0.826 31 H 0.150 0.850 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.130 0.870 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.852 19.706 -5.867 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.158 5.158 3 C -0.096 4.096 4 C -0.292 4.292 5 C -0.091 4.091 6 C -0.071 4.071 7 C 0.301 3.699 8 O -0.388 6.388 9 O -0.268 6.268 10 C 0.058 3.942 11 C -0.204 4.204 12 C -0.067 4.067 13 C -0.215 4.215 14 C 0.108 3.892 15 O -0.075 6.075 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.257 4.257 25 C -0.063 4.063 26 N -0.086 5.086 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.191 0.809 31 H 0.168 0.832 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.870 18.257 -5.732 26.875 hybrid contribution 1.147 1.117 0.615 1.715 sum -17.723 19.374 -5.116 26.752 Atomic orbital electron populations 1.21856 0.74203 1.04395 1.03495 1.48543 1.06703 1.03829 1.56769 1.22511 0.91083 0.93487 1.02497 1.21352 0.97295 0.93847 1.16658 1.21546 0.92629 0.93549 1.01393 1.19630 0.95455 0.94881 0.97178 1.23306 0.80426 0.80258 0.85946 1.90682 1.32983 1.69129 1.46031 1.86637 1.46406 1.44587 1.49207 1.21674 0.97100 0.89417 0.85965 1.18880 0.96692 0.96309 1.08505 1.20518 0.96857 0.92992 0.96338 1.20198 0.93236 1.02065 1.06009 1.19439 0.88728 0.89124 0.91908 1.83975 1.18946 1.37437 1.67151 1.21368 0.87080 1.05217 1.33245 0.88879 1.25324 0.98491 0.95517 0.97158 1.70039 1.28837 1.10540 1.39935 0.85687 0.79591 0.79074 0.78952 1.19828 1.20193 1.19104 1.21142 1.00464 0.96483 1.07618 1.20624 0.91912 0.97601 0.96210 1.77433 1.01179 1.07393 1.22634 0.90691 0.89483 0.89256 0.80872 0.83211 0.85677 0.86051 0.91263 0.91331 0.86872 0.86214 0.91894 0.85275 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 11.47 59.85 0.69 1.24 16 2 N -0.38 -3.72 4.01 -68.16 -0.27 -3.99 16 3 C 0.05 0.40 11.49 -17.22 -0.20 0.20 16 4 C -0.26 -2.44 10.72 -40.01 -0.43 -2.87 16 5 C 0.08 0.89 6.02 -82.41 -0.50 0.39 16 6 C -0.03 -0.33 6.39 -29.03 -0.19 -0.51 16 7 C 0.46 6.50 7.95 36.01 0.29 6.78 16 8 O -0.50 -8.59 15.31 -18.74 -0.29 -8.88 16 9 O -0.35 -5.35 10.20 -39.26 -0.40 -5.75 16 10 C 0.13 2.04 5.59 36.00 0.20 2.24 16 11 C -0.20 -3.60 5.52 -104.58 -0.58 -4.18 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 13 C -0.20 -4.12 9.99 -39.39 -0.39 -4.51 16 14 C 0.16 3.90 6.65 -39.10 -0.26 3.64 16 15 O -0.17 -4.87 9.76 0.07 0.00 -4.87 16 16 C -0.39 -10.83 9.49 30.89 0.29 -10.53 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 20 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.24 -5.12 9.17 -39.39 -0.36 -5.49 16 25 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 26 N -0.26 -3.54 11.92 33.67 0.40 -3.14 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 31 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.13 0.92 8.12 -51.93 -0.42 0.49 16 33 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 35 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 40 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -35.62 357.35 -6.51 -42.13 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.77 Total: 3.13 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -2.30 Total: -15.10 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.89 Total: -31.23 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.69 Total: -19.49 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.62 -6.51 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782382790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.092 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds